Wall clock time and date at job start Fri Apr 10 2020 22:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47473 * 2 1 4 4 C 1.52996 * 109.47068 * 120.00380 * 2 1 3 5 5 C 1.53003 * 109.47532 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47017 * 299.99933 * 5 4 2 7 7 C 1.53000 * 109.47030 * 299.99712 * 6 5 4 8 8 C 1.52996 * 109.47301 * 179.97438 * 6 5 4 9 9 N 1.46498 * 109.47059 * 179.97438 * 8 6 5 10 10 C 1.34777 * 119.99828 * 179.72339 * 9 8 6 11 11 O 1.21593 * 119.99949 * 0.28071 * 10 9 8 12 12 N 1.34777 * 120.00128 * 180.27942 * 10 9 8 13 13 C 1.46499 * 120.00065 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47198 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.47321 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47554 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00505 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99687 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00201 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46991 * 59.99818 * 20 18 16 22 22 H 1.48498 * 109.47276 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47355 * 300.00458 * 20 18 16 24 24 C 1.53010 * 109.46927 * 59.99585 * 6 5 4 25 25 C 1.52996 * 109.47146 * 300.00115 * 24 6 5 26 26 H 1.08994 * 109.47089 * 299.99846 * 1 2 3 27 27 H 1.09004 * 109.47066 * 59.99770 * 1 2 3 28 28 H 1.09000 * 109.47234 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47675 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47162 * 300.00171 * 3 2 1 31 31 H 1.09003 * 109.46711 * 59.99763 * 3 2 1 32 32 H 1.09003 * 109.47532 * 60.00149 * 4 2 1 33 33 H 1.09003 * 109.46851 * 300.00074 * 4 2 1 34 34 H 1.08990 * 109.47421 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.47073 * 59.99223 * 5 4 2 36 36 H 1.08990 * 109.47258 * 299.99903 * 7 6 5 37 37 H 1.09001 * 109.46739 * 60.00141 * 7 6 5 38 38 H 1.08999 * 109.47407 * 179.97438 * 7 6 5 39 39 H 1.09004 * 109.47066 * 60.00027 * 8 6 5 40 40 H 1.08994 * 109.46974 * 300.00175 * 8 6 5 41 41 H 0.97001 * 120.00384 * 0.02562 * 9 8 6 42 42 H 0.97000 * 119.99549 * 359.97438 * 12 10 9 43 43 H 1.09000 * 109.47602 * 299.99940 * 13 12 10 44 44 H 1.09006 * 109.46868 * 59.99976 * 13 12 10 45 45 H 1.09000 * 109.47211 * 300.00689 * 14 13 12 46 46 H 1.09007 * 109.46376 * 60.00147 * 14 13 12 47 47 H 1.09000 * 109.47686 * 300.00577 * 15 14 13 48 48 H 1.08998 * 109.47284 * 60.00513 * 15 14 13 49 49 H 0.97010 * 119.99934 * 180.02562 * 19 18 16 50 50 H 1.09000 * 109.46753 * 60.00569 * 24 6 5 51 51 H 1.09003 * 109.46863 * 179.97438 * 24 6 5 52 52 H 1.08994 * 109.46974 * 299.99940 * 25 24 6 53 53 H 1.09004 * 109.47066 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2496 6 6 4.0805 -1.4417 0.0003 7 6 3.5710 -2.8843 -0.0001 8 6 5.6105 -1.4406 0.0004 9 7 6.0993 -2.1314 -1.1955 10 6 7.4245 -2.2488 -1.4115 11 8 8.2143 -1.7860 -0.6112 12 7 7.8742 -2.8794 -2.5145 13 6 9.3146 -3.0075 -2.7490 14 6 9.5530 -3.7591 -4.0602 15 6 11.0573 -3.8924 -4.3055 16 6 11.2921 -4.6321 -5.5972 17 1 10.4524 -4.9727 -6.1848 18 6 12.5790 -4.8741 -6.0290 19 7 13.6015 -4.4598 -5.3133 20 14 12.8700 -5.7904 -7.6306 21 1 12.2511 -5.0375 -8.7512 22 1 14.3301 -5.9210 -7.8680 23 1 12.2600 -7.1416 -7.5458 24 6 3.5705 -0.7203 -1.2490 25 6 2.0405 -0.7208 -1.2493 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7490 1.2491 33 1 1.6766 -0.2075 2.1392 34 1 3.9332 -1.2343 2.1397 35 1 3.9330 0.3070 1.2498 36 1 3.9343 -3.3982 0.8898 37 1 2.4810 -2.8846 -0.0003 38 1 3.9344 -3.3978 -0.8902 39 1 5.9742 -1.9543 0.8904 40 1 5.9731 -0.4128 0.0005 41 1 5.4693 -2.5004 -1.8341 42 1 7.2441 -3.2490 -3.1527 43 1 9.7622 -2.0157 -2.8118 44 1 9.7689 -3.5598 -1.9263 45 1 9.1054 -4.7510 -3.9971 46 1 9.0986 -3.2072 -4.8831 47 1 11.5045 -2.9004 -4.3688 48 1 11.5121 -4.4441 -3.4827 49 1 14.5069 -4.6297 -5.6173 50 1 3.9336 0.3074 -1.2487 51 1 3.9346 -1.2336 -2.1390 52 1 1.6776 -1.7486 -1.2496 53 1 1.6772 -0.2073 -2.1395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413253708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:30 Heat of formation + Delta-G solvation = -99.723480 kcal Electronic energy + Delta-G solvation = -26110.052159 eV Core-core repulsion = 22592.818471 eV Total energy + Delta-G solvation = -3517.233688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.54998 -40.60364 -37.30911 -36.60176 -35.17975 -34.21490 -32.79669 -31.72741 -29.39480 -28.78178 -28.11638 -27.42932 -25.25752 -24.38578 -23.68768 -22.29403 -21.75614 -20.69242 -19.34570 -18.53915 -18.38303 -17.27482 -16.92218 -16.50900 -16.33239 -15.91345 -15.77980 -15.50471 -15.37231 -15.07924 -14.87345 -14.51258 -14.30610 -14.21170 -13.73010 -13.60173 -13.25471 -13.14654 -12.92597 -12.81552 -12.70337 -12.66569 -12.63976 -12.54095 -12.39204 -12.15339 -12.01759 -11.69798 -11.65632 -11.62959 -11.57577 -11.30916 -11.15710 -10.93996 -10.83593 -10.73176 -10.53758 -10.36840 -9.73363 -8.18183 -6.29826 1.42226 1.45510 1.53309 1.74032 2.16271 2.42928 3.15285 3.35425 3.59731 3.68304 3.79572 4.04542 4.14962 4.17164 4.21217 4.24335 4.38380 4.49222 4.52105 4.57242 4.63929 4.67924 4.75320 4.80455 4.85919 4.91601 4.92195 4.96979 5.00372 5.02334 5.11946 5.16338 5.17668 5.18118 5.19227 5.20162 5.25480 5.30374 5.34186 5.47461 5.51234 5.54580 5.56284 5.57255 5.63055 5.72188 5.73817 5.85237 6.02563 6.23655 6.87190 7.12630 7.39522 7.59962 8.93666 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.031867 B = 0.001909 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.438357 B =14660.957276 C =15037.644833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.103 4.103 5 C -0.108 4.108 6 C -0.058 4.058 7 C -0.144 4.144 8 C 0.150 3.850 9 N -0.726 5.726 10 C 0.695 3.305 11 O -0.643 6.643 12 N -0.731 5.731 13 C 0.150 3.850 14 C -0.100 4.100 15 C 0.023 3.977 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.110 4.110 25 C -0.105 4.105 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.409 0.591 42 H 0.411 0.589 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.068 0.932 47 H -0.008 1.008 48 H -0.008 1.008 49 H 0.263 0.737 50 H 0.060 0.940 51 H 0.063 0.937 52 H 0.072 0.928 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.915 7.703 11.195 34.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.141 4.141 5 C -0.146 4.146 6 C -0.058 4.058 7 C -0.201 4.201 8 C 0.025 3.975 9 N -0.384 5.384 10 C 0.395 3.605 11 O -0.525 6.525 12 N -0.386 5.386 13 C 0.025 3.975 14 C -0.138 4.138 15 C -0.015 4.015 16 C -0.579 4.579 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.147 4.147 25 C -0.143 4.143 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.247 0.753 42 H 0.248 0.752 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.010 0.990 48 H 0.010 0.990 49 H 0.072 0.928 50 H 0.079 0.921 51 H 0.082 0.918 52 H 0.090 0.910 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -31.028 8.126 11.928 34.221 hybrid contribution 0.499 -0.542 -1.093 1.318 sum -30.530 7.583 10.835 33.271 Atomic orbital electron populations 1.21846 0.94247 1.01909 1.01735 1.20532 0.95388 0.95272 0.95247 1.21975 1.01197 0.95601 1.01483 1.21584 0.94265 1.00924 0.97283 1.21554 0.96424 1.00395 0.96225 1.20685 0.91134 0.97070 0.96918 1.21974 1.02186 0.94059 1.01882 1.21270 0.94120 0.95919 0.86160 1.44980 1.03935 1.62165 1.27285 1.16213 0.83311 0.79109 0.81863 1.90889 1.56588 1.56238 1.48791 1.45017 1.08296 1.61152 1.24168 1.21061 0.79416 0.99445 0.97555 1.21583 0.97717 0.99710 0.94747 1.18946 0.91797 0.95231 0.95517 1.21649 0.92566 1.36352 1.07355 0.91471 1.26045 0.96085 0.96899 1.01210 1.70114 0.98992 1.47931 1.40453 0.85452 0.76899 0.79225 0.79159 1.19007 1.21208 1.19019 1.21630 0.96286 1.00323 0.96490 1.21609 0.94456 1.00969 0.97238 0.92629 0.92759 0.92372 0.92566 0.92980 0.92774 0.91107 0.91700 0.91736 0.91729 0.92946 0.90505 0.92513 0.93010 0.93179 0.75304 0.75239 0.93650 0.93652 0.91317 0.91335 0.98977 0.98966 0.92844 0.92148 0.91815 0.90992 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.48 71.98 0.61 -0.53 16 2 C -0.06 -0.59 0.77 -52.18 -0.04 -0.63 16 3 C -0.15 -1.52 7.78 71.98 0.56 -0.96 16 4 C -0.10 -0.95 4.46 30.59 0.14 -0.81 16 5 C -0.11 -1.24 4.46 30.60 0.14 -1.10 16 6 C -0.06 -0.71 0.53 -52.18 -0.03 -0.74 16 7 C -0.14 -1.56 7.61 71.98 0.55 -1.01 16 8 C 0.15 2.92 4.56 86.38 0.39 3.31 16 9 N -0.73 -15.19 4.96 -478.54 -2.37 -17.56 16 10 C 0.70 21.52 8.57 179.05 1.53 23.05 16 11 O -0.64 -26.54 16.34 -4.01 -0.07 -26.61 16 12 N -0.73 -20.97 5.56 -478.52 -2.66 -23.63 16 13 C 0.15 5.51 5.67 86.38 0.49 6.00 16 14 C -0.10 -3.88 5.27 30.59 0.16 -3.72 16 15 C 0.02 1.20 4.97 29.84 0.15 1.35 16 16 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 17 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 19 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 20 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 24 C -0.11 -1.27 4.28 30.60 0.13 -1.14 16 25 C -0.11 -0.99 4.46 30.59 0.14 -0.86 16 26 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.67 4.80 -2.39 -0.01 0.65 16 30 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.60 6.43 -2.39 -0.02 0.59 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.81 6.43 -2.39 -0.02 0.79 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.66 4.81 -2.39 -0.01 0.65 16 38 H 0.06 0.60 6.86 -2.39 -0.02 0.58 16 39 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.41 5.99 6.18 -92.71 -0.57 5.42 16 42 H 0.41 8.75 8.49 -92.71 -0.79 7.96 16 43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 46 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 47 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 48 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 49 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 50 H 0.06 0.82 6.43 -2.39 -0.02 0.80 16 51 H 0.06 0.71 6.86 -2.39 -0.02 0.70 16 52 H 0.07 0.61 6.43 -2.39 -0.02 0.59 16 53 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -71.47 395.61 2.34 -69.12 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.48 Total: 17.67 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 5.61 Total: -7.72 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -4.75 Total: -98.41 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.07 Total: -26.61 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -71.47 2.34 -69.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413253708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.602 kcal (2) G-P(sol) polarization free energy of solvation -71.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds