Wall clock time and date at job start Fri Apr 10 2020 22:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47415 * 2 1 4 4 C 1.53004 * 109.47036 * 240.00270 * 2 1 3 5 5 C 1.52999 * 109.47665 * 120.00172 * 2 1 3 6 6 C 1.53002 * 109.46699 * 53.40620 * 5 2 1 7 7 H 1.09001 * 110.64254 * 305.18004 * 6 5 2 8 8 C 1.55157 * 110.72141 * 68.32769 * 6 5 2 9 9 C 1.54910 * 101.58488 * 153.86302 * 8 6 5 10 10 N 1.47427 * 104.83056 * 322.99002 * 9 8 6 11 11 C 1.34770 * 125.64809 * 204.09386 * 10 9 8 12 12 O 1.21582 * 120.00407 * 180.02562 * 11 10 9 13 13 N 1.34784 * 119.99822 * 0.02562 * 11 10 9 14 14 C 1.46505 * 119.99825 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46981 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.46853 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00140 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99608 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00188 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99746 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47051 * 90.00016 * 20 18 16 22 22 H 1.48500 * 109.46838 * 209.99797 * 20 18 16 23 23 H 1.48497 * 109.47165 * 330.00176 * 20 18 16 24 24 C 1.47022 * 108.70224 * 24.12849 * 10 9 8 25 25 C 1.53002 * 109.87855 * 239.52440 * 24 10 9 26 26 C 1.52998 * 110.00995 * 118.43192 * 24 10 9 27 27 H 1.08997 * 109.46527 * 299.99733 * 1 2 3 28 28 H 1.08999 * 109.46969 * 59.99870 * 1 2 3 29 29 H 1.09004 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47598 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47045 * 300.00524 * 3 2 1 32 32 H 1.09002 * 109.46906 * 60.00145 * 3 2 1 33 33 H 1.09001 * 109.46819 * 321.26054 * 4 2 1 34 34 H 1.08999 * 109.47468 * 81.25650 * 4 2 1 35 35 H 1.08997 * 109.47067 * 201.26328 * 4 2 1 36 36 H 1.09000 * 109.46855 * 293.41412 * 5 2 1 37 37 H 1.08993 * 109.47476 * 173.40956 * 5 2 1 38 38 H 1.08997 * 111.00523 * 35.78255 * 8 6 5 39 39 H 1.09008 * 111.00025 * 271.93677 * 8 6 5 40 40 H 1.09003 * 110.36413 * 81.82747 * 9 8 6 41 41 H 1.08997 * 110.36906 * 204.14982 * 9 8 6 42 42 H 0.97000 * 120.00002 * 359.97438 * 13 11 10 43 43 H 1.08996 * 109.47310 * 300.00385 * 14 13 11 44 44 H 1.09004 * 109.46852 * 60.00264 * 14 13 11 45 45 H 1.08998 * 109.46942 * 299.99904 * 15 14 13 46 46 H 1.08997 * 109.46953 * 60.00085 * 15 14 13 47 47 H 0.96996 * 120.00339 * 179.97438 * 19 18 16 48 48 H 1.08997 * 109.46923 * 177.80940 * 25 24 10 49 49 H 1.09000 * 109.47468 * 297.80413 * 25 24 10 50 50 H 1.08999 * 109.47515 * 57.81383 * 25 24 10 51 51 H 1.08997 * 109.47436 * 302.11181 * 26 24 10 52 52 H 1.09005 * 109.47321 * 62.11428 * 26 24 10 53 53 H 1.09000 * 109.47224 * 182.11242 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.3994 -2.1080 1.3347 7 1 0.3126 -2.0319 1.3006 8 6 1.9215 -3.0251 0.1972 9 6 1.7413 -4.4305 0.8232 10 7 2.0710 -4.2535 2.2492 11 6 2.4955 -5.2232 3.0834 12 8 2.7385 -4.9618 4.2457 13 7 2.6506 -6.4826 2.6293 14 6 3.1126 -7.5366 3.5360 15 6 3.2019 -8.8610 2.7751 16 6 3.6765 -9.9452 3.7080 17 1 3.8923 -9.7130 4.7404 18 6 3.8350 -11.2336 3.2434 19 7 3.5717 -11.5165 1.9863 20 14 4.4240 -12.5775 4.3995 21 1 3.2532 -13.2204 5.0484 22 1 5.1838 -13.5949 3.6296 23 1 5.3031 -11.9855 5.4396 24 6 1.8593 -2.8442 2.6106 25 6 3.1675 -2.2355 3.1197 26 6 0.7808 -2.7371 3.6905 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.4053 -1.5830 -1.4558 34 1 2.0138 -0.0389 -2.0989 35 1 3.0640 -1.0556 -1.0832 36 1 1.7763 -0.1439 2.1352 37 1 3.1237 -0.8245 1.1921 38 1 2.9713 -2.8239 -0.0161 39 1 1.3142 -2.9169 -0.7016 40 1 0.7104 -4.7664 0.7111 41 1 2.4254 -5.1422 0.3611 42 1 2.4564 -6.6912 1.7021 43 1 4.0958 -7.2746 3.9267 44 1 2.4088 -7.6393 4.3621 45 1 2.2184 -9.1228 2.3848 46 1 3.9053 -8.7585 1.9488 47 1 3.6836 -12.4228 1.6594 48 1 3.0126 -1.1812 3.3488 49 1 3.4860 -2.7601 4.0205 50 1 3.9357 -2.3315 2.3524 51 1 -0.1426 -3.1885 3.3280 52 1 1.1123 -3.2589 4.5883 53 1 0.6043 -1.6873 3.9249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413446007.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:33 Heat of formation + Delta-G solvation = -52.945329 kcal Electronic energy + Delta-G solvation = -27314.243731 eV Core-core repulsion = 23799.038496 eV Total energy + Delta-G solvation = -3515.205235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82840 -38.81028 -36.84767 -34.76793 -33.26859 -32.38264 -31.65073 -29.40996 -27.99210 -27.80692 -27.45201 -26.86114 -24.70665 -24.20913 -22.45423 -21.07211 -20.26299 -19.05501 -18.48345 -17.31011 -16.38772 -16.27285 -15.35391 -15.27554 -14.93848 -14.62987 -14.45446 -14.30355 -13.93221 -13.72936 -13.69235 -13.36845 -13.19708 -12.85581 -12.65302 -12.45631 -12.27786 -12.20032 -12.05555 -11.89381 -11.87572 -11.63886 -11.39927 -11.27667 -11.15423 -11.04580 -11.00320 -10.74780 -10.61211 -10.60441 -10.49510 -10.26903 -10.21363 -9.72560 -9.47124 -9.20810 -8.61321 -8.42328 -8.10100 -6.06942 -4.09338 2.94902 3.31179 3.37136 3.41915 3.66350 4.16619 4.37190 4.40609 4.42985 4.52958 4.59688 4.71012 4.91043 5.05724 5.12800 5.16160 5.20005 5.29518 5.30111 5.30836 5.39532 5.43010 5.48370 5.55930 5.57203 5.60837 5.66633 5.68187 5.70528 5.74134 5.77535 5.90975 5.94363 5.99206 5.99685 6.08243 6.13967 6.17261 6.24906 6.40424 6.43763 6.45707 6.69519 6.81503 7.09158 7.42688 7.61051 7.66717 7.92587 8.29532 8.48819 8.96015 9.10517 9.55196 11.04790 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.030045 B = 0.002517 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.706970 B =11122.457721 C =11608.728957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.152 4.152 5 C -0.098 4.098 6 C -0.092 4.092 7 H 0.088 0.912 8 C -0.130 4.130 9 C 0.095 3.905 10 N -0.634 5.634 11 C 0.718 3.282 12 O -0.593 6.593 13 N -0.739 5.739 14 C 0.141 3.859 15 C 0.014 3.986 16 C -0.519 4.519 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.186 3.814 25 C -0.157 4.157 26 C -0.156 4.156 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.391 0.609 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.262 0.738 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.053 0.947 51 H 0.052 0.948 52 H 0.072 0.928 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.269 25.618 -8.021 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.209 4.209 5 C -0.135 4.135 6 C -0.111 4.111 7 H 0.106 0.894 8 C -0.167 4.167 9 C -0.028 4.028 10 N -0.373 5.373 11 C 0.420 3.580 12 O -0.471 6.471 13 N -0.392 5.392 14 C 0.018 3.982 15 C -0.024 4.024 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C 0.101 3.899 25 C -0.215 4.215 26 C -0.214 4.214 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.072 0.928 51 H 0.071 0.929 52 H 0.091 0.909 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.037 25.548 -7.197 27.220 hybrid contribution 0.186 -1.020 0.006 1.037 sum -5.850 24.528 -7.191 26.221 Atomic orbital electron populations 1.21983 0.94740 1.01974 1.01486 1.20549 0.95621 0.95233 0.95532 1.21885 1.00991 0.95416 1.01529 1.22294 1.01431 1.00506 0.96645 1.21772 1.00437 0.94231 0.97097 1.22388 1.00781 0.94300 0.93611 0.89350 1.23205 1.02236 0.93452 0.97833 1.22298 1.00442 0.98225 0.81855 1.47725 1.71490 1.08180 1.09893 1.15577 0.78136 0.80238 0.84055 1.90847 1.58514 1.81701 1.16069 1.45579 1.71654 1.07350 1.14667 1.21565 0.98029 0.86391 0.92171 1.19316 0.97691 0.89394 0.95997 1.21057 1.45057 0.93107 0.96580 0.92231 1.24998 0.95379 0.98763 0.95201 1.69957 1.48937 1.20207 1.14295 0.86512 0.78874 0.81423 0.80745 1.20573 1.21194 1.19724 1.20683 0.95216 0.79916 0.94107 1.22236 0.96565 1.00329 1.02390 1.22154 0.97886 1.01441 0.99926 0.92770 0.92985 0.92118 0.92726 0.92839 0.92794 0.91471 0.93252 0.92417 0.91622 0.91164 0.90394 0.89365 0.91823 0.90946 0.77521 0.92888 0.92884 0.96051 0.96050 0.92892 0.92001 0.90933 0.92825 0.92897 0.90850 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 7.86 37.16 0.29 -0.57 16 2 C -0.07 -0.43 0.80 -154.50 -0.12 -0.55 16 3 C -0.14 -0.83 8.37 37.16 0.31 -0.52 16 4 C -0.15 -0.92 7.28 37.16 0.27 -0.65 16 5 C -0.10 -0.70 2.61 -26.73 -0.07 -0.77 16 6 C -0.09 -0.77 1.99 -88.78 -0.18 -0.95 16 7 H 0.09 0.71 5.83 -51.93 -0.30 0.41 16 8 C -0.13 -1.05 4.66 -24.58 -0.11 -1.17 16 9 C 0.10 1.02 6.57 -2.53 -0.02 1.01 16 10 N -0.63 -8.95 2.82 -161.44 -0.46 -9.41 16 11 C 0.72 13.33 8.07 -86.92 -0.70 12.63 16 12 O -0.59 -12.93 13.97 5.29 0.07 -12.86 16 13 N -0.74 -13.94 5.52 -65.22 -0.36 -14.30 16 14 C 0.14 3.15 5.61 -4.04 -0.02 3.12 16 15 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 16 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 20 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.19 2.20 0.77 -130.84 -0.10 2.10 16 25 C -0.16 -1.91 7.25 37.16 0.27 -1.65 16 26 C -0.16 -1.91 8.41 37.16 0.31 -1.60 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.37 6.21 -51.93 -0.32 0.05 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.30 8.13 -51.93 -0.42 -0.12 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.39 5.09 -51.93 -0.26 0.12 16 34 H 0.05 0.29 7.95 -51.93 -0.41 -0.12 16 35 H 0.06 0.37 6.94 -51.93 -0.36 0.01 16 36 H 0.07 0.48 7.48 -51.93 -0.39 0.09 16 37 H 0.07 0.55 6.56 -51.93 -0.34 0.21 16 38 H 0.08 0.65 7.07 -51.93 -0.37 0.28 16 39 H 0.09 0.56 5.72 -51.92 -0.30 0.27 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.77 7.30 -51.93 -0.38 0.39 16 42 H 0.39 6.56 6.95 -40.82 -0.28 6.28 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.06 0.61 6.61 -51.93 -0.34 0.27 16 49 H 0.07 1.12 6.77 -51.93 -0.35 0.77 16 50 H 0.05 0.64 7.59 -51.93 -0.39 0.25 16 51 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 52 H 0.07 1.13 6.90 -51.93 -0.36 0.77 16 53 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -31.75 391.08 -9.34 -41.09 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -9.78 Total: 1.41 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.42 Total: -2.77 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.08 Total: -49.38 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.86 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.75 -9.34 -41.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413446007.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.859 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds