Wall clock time and date at job start Fri Apr 10 2020 22:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47415 * 2 1 4 4 C 1.53004 * 109.47036 * 240.00270 * 2 1 3 5 5 C 1.52999 * 109.47665 * 120.00172 * 2 1 3 6 6 C 1.53002 * 109.46699 * 53.40620 * 5 2 1 7 7 H 1.09001 * 110.64254 * 305.18004 * 6 5 2 8 8 C 1.55157 * 110.72141 * 68.32769 * 6 5 2 9 9 C 1.54910 * 101.58488 * 153.86302 * 8 6 5 10 10 N 1.47427 * 104.83056 * 322.99002 * 9 8 6 11 11 C 1.34770 * 125.64809 * 204.09386 * 10 9 8 12 12 O 1.21582 * 120.00407 * 180.02562 * 11 10 9 13 13 N 1.34784 * 119.99822 * 0.02562 * 11 10 9 14 14 C 1.46505 * 119.99825 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46981 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.46853 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00140 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99608 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00188 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99746 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47051 * 90.00016 * 20 18 16 22 22 H 1.48500 * 109.46838 * 209.99797 * 20 18 16 23 23 H 1.48497 * 109.47165 * 330.00176 * 20 18 16 24 24 C 1.47022 * 108.70224 * 24.12849 * 10 9 8 25 25 C 1.53002 * 109.87855 * 239.52440 * 24 10 9 26 26 C 1.52998 * 110.00995 * 118.43192 * 24 10 9 27 27 H 1.08997 * 109.46527 * 299.99733 * 1 2 3 28 28 H 1.08999 * 109.46969 * 59.99870 * 1 2 3 29 29 H 1.09004 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47598 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47045 * 300.00524 * 3 2 1 32 32 H 1.09002 * 109.46906 * 60.00145 * 3 2 1 33 33 H 1.09001 * 109.46819 * 321.26054 * 4 2 1 34 34 H 1.08999 * 109.47468 * 81.25650 * 4 2 1 35 35 H 1.08997 * 109.47067 * 201.26328 * 4 2 1 36 36 H 1.09000 * 109.46855 * 293.41412 * 5 2 1 37 37 H 1.08993 * 109.47476 * 173.40956 * 5 2 1 38 38 H 1.08997 * 111.00523 * 35.78255 * 8 6 5 39 39 H 1.09008 * 111.00025 * 271.93677 * 8 6 5 40 40 H 1.09003 * 110.36413 * 81.82747 * 9 8 6 41 41 H 1.08997 * 110.36906 * 204.14982 * 9 8 6 42 42 H 0.97000 * 120.00002 * 359.97438 * 13 11 10 43 43 H 1.08996 * 109.47310 * 300.00385 * 14 13 11 44 44 H 1.09004 * 109.46852 * 60.00264 * 14 13 11 45 45 H 1.08998 * 109.46942 * 299.99904 * 15 14 13 46 46 H 1.08997 * 109.46953 * 60.00085 * 15 14 13 47 47 H 0.96996 * 120.00339 * 179.97438 * 19 18 16 48 48 H 1.08997 * 109.46923 * 177.80940 * 25 24 10 49 49 H 1.09000 * 109.47468 * 297.80413 * 25 24 10 50 50 H 1.08999 * 109.47515 * 57.81383 * 25 24 10 51 51 H 1.08997 * 109.47436 * 302.11181 * 26 24 10 52 52 H 1.09005 * 109.47321 * 62.11428 * 26 24 10 53 53 H 1.09000 * 109.47224 * 182.11242 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.3994 -2.1080 1.3347 7 1 0.3126 -2.0319 1.3006 8 6 1.9215 -3.0251 0.1972 9 6 1.7413 -4.4305 0.8232 10 7 2.0710 -4.2535 2.2492 11 6 2.4955 -5.2232 3.0834 12 8 2.7385 -4.9618 4.2457 13 7 2.6506 -6.4826 2.6293 14 6 3.1126 -7.5366 3.5360 15 6 3.2019 -8.8610 2.7751 16 6 3.6765 -9.9452 3.7080 17 1 3.8923 -9.7130 4.7404 18 6 3.8350 -11.2336 3.2434 19 7 3.5717 -11.5165 1.9863 20 14 4.4240 -12.5775 4.3995 21 1 3.2532 -13.2204 5.0484 22 1 5.1838 -13.5949 3.6296 23 1 5.3031 -11.9855 5.4396 24 6 1.8593 -2.8442 2.6106 25 6 3.1675 -2.2355 3.1197 26 6 0.7808 -2.7371 3.6905 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.4053 -1.5830 -1.4558 34 1 2.0138 -0.0389 -2.0989 35 1 3.0640 -1.0556 -1.0832 36 1 1.7763 -0.1439 2.1352 37 1 3.1237 -0.8245 1.1921 38 1 2.9713 -2.8239 -0.0161 39 1 1.3142 -2.9169 -0.7016 40 1 0.7104 -4.7664 0.7111 41 1 2.4254 -5.1422 0.3611 42 1 2.4564 -6.6912 1.7021 43 1 4.0958 -7.2746 3.9267 44 1 2.4088 -7.6393 4.3621 45 1 2.2184 -9.1228 2.3848 46 1 3.9053 -8.7585 1.9488 47 1 3.6836 -12.4228 1.6594 48 1 3.0126 -1.1812 3.3488 49 1 3.4860 -2.7601 4.0205 50 1 3.9357 -2.3315 2.3524 51 1 -0.1426 -3.1885 3.3280 52 1 1.1123 -3.2589 4.5883 53 1 0.6043 -1.6873 3.9249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413446007.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:32 Heat of formation + Delta-G solvation = -70.715767 kcal Electronic energy + Delta-G solvation = -27315.014315 eV Core-core repulsion = 23799.038496 eV Total energy + Delta-G solvation = -3515.975819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.85769 -39.94189 -37.72344 -36.51790 -34.97243 -33.78934 -32.58479 -31.19269 -28.86018 -28.38151 -28.03162 -27.68834 -26.60981 -25.04194 -23.67066 -22.79390 -21.38757 -20.13111 -19.21385 -18.62103 -18.32450 -17.30755 -16.71036 -16.53168 -16.38110 -15.61436 -15.58294 -15.29727 -15.01057 -14.85839 -14.60526 -14.41372 -14.31913 -14.23307 -13.93302 -13.36613 -13.23048 -13.10514 -13.02800 -12.89468 -12.81609 -12.60591 -12.53828 -12.51380 -12.46549 -12.28946 -12.20633 -12.00540 -11.65966 -11.62182 -11.46548 -11.31815 -11.20026 -11.16788 -11.00608 -10.83567 -10.61178 -10.11917 -9.43403 -8.24859 -6.35349 1.40894 1.41826 1.53117 1.67691 2.19741 2.40236 3.09652 3.10099 3.50897 3.64175 3.77607 4.04275 4.09549 4.15455 4.23846 4.34298 4.38666 4.46188 4.49657 4.55719 4.63736 4.70710 4.73308 4.74177 4.79956 4.83923 4.87066 4.90218 4.94056 4.97505 5.01274 5.06749 5.07805 5.15950 5.22314 5.26409 5.28840 5.30008 5.35185 5.41238 5.49619 5.52978 5.56467 5.57120 5.59964 5.68212 5.71383 5.79166 6.13370 6.18561 6.77398 7.06556 7.33881 7.63774 8.87202 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.030045 B = 0.002517 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.706970 B =11122.457721 C =11608.728957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.153 4.153 5 C -0.094 4.094 6 C -0.078 4.078 7 H 0.101 0.899 8 C -0.120 4.120 9 C 0.085 3.915 10 N -0.630 5.630 11 C 0.712 3.288 12 O -0.631 6.631 13 N -0.736 5.736 14 C 0.163 3.837 15 C 0.026 3.974 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.267 1.267 24 C 0.176 3.824 25 C -0.151 4.151 26 C -0.152 4.152 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.402 0.598 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.007 0.993 46 H 0.007 0.993 47 H 0.266 0.734 48 H 0.086 0.914 49 H 0.032 0.968 50 H 0.053 0.947 51 H 0.055 0.945 52 H 0.034 0.966 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.913 26.840 -9.148 29.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 C -0.198 4.198 4 C -0.209 4.209 5 C -0.132 4.132 6 C -0.097 4.097 7 H 0.119 0.881 8 C -0.157 4.157 9 C -0.038 4.038 10 N -0.367 5.367 11 C 0.414 3.586 12 O -0.513 6.513 13 N -0.391 5.391 14 C 0.039 3.961 15 C -0.011 4.011 16 C -0.585 4.585 17 H 0.076 0.924 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.191 1.191 24 C 0.091 3.909 25 C -0.209 4.209 26 C -0.210 4.210 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.237 0.763 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.075 0.925 48 H 0.105 0.895 49 H 0.052 0.948 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.053 0.947 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.701 26.812 -8.372 28.877 hybrid contribution 0.363 -1.327 0.319 1.412 sum -6.339 25.485 -8.052 27.469 Atomic orbital electron populations 1.21984 0.94329 1.02149 1.01732 1.20505 0.95860 0.95213 0.94930 1.21882 1.00862 0.95280 1.01801 1.22299 1.01282 1.00740 0.96629 1.21745 1.00083 0.93430 0.97947 1.22341 1.01500 0.94477 0.91407 0.88141 1.23239 1.02896 0.91178 0.98370 1.22621 1.01088 1.00260 0.79802 1.47796 1.69771 1.08222 1.10927 1.15715 0.78211 0.80557 0.84085 1.90821 1.60113 1.82332 1.17998 1.45297 1.71985 1.07139 1.14697 1.21037 0.97156 0.86059 0.91860 1.19103 0.96193 0.90457 0.95354 1.21446 1.45647 0.94366 0.97030 0.92377 1.25880 0.95266 1.01154 0.96872 1.70057 1.49521 1.21046 1.15938 0.85430 0.78603 0.78268 0.78656 1.19697 1.20358 1.19136 1.21011 0.94996 0.78904 0.95940 1.22177 0.96784 1.01345 1.00556 1.22112 0.97877 1.02593 0.98408 0.92755 0.92618 0.91934 0.92961 0.92453 0.92690 0.90958 0.92985 0.92787 0.91308 0.91619 0.90351 0.86725 0.90630 0.90972 0.76258 0.94105 0.94075 0.97450 0.97441 0.92495 0.89501 0.94842 0.92755 0.92624 0.94655 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 7.86 71.98 0.57 -0.72 16 2 C -0.07 -0.62 0.80 -52.18 -0.04 -0.66 16 3 C -0.14 -1.33 8.37 71.98 0.60 -0.73 16 4 C -0.15 -1.40 7.28 71.98 0.52 -0.88 16 5 C -0.09 -1.11 2.61 30.59 0.08 -1.03 16 6 C -0.08 -1.11 1.99 -9.60 -0.02 -1.13 16 7 H 0.10 1.26 5.83 -2.39 -0.01 1.25 16 8 C -0.12 -1.61 4.66 31.99 0.15 -1.46 16 9 C 0.08 1.68 6.57 86.85 0.57 2.25 16 10 N -0.63 -17.57 2.82 -782.95 -2.21 -19.78 16 11 C 0.71 27.11 8.07 179.05 1.44 28.55 16 12 O -0.63 -28.75 13.97 -3.98 -0.06 -28.81 16 13 N -0.74 -28.45 5.52 -478.52 -2.64 -31.09 16 14 C 0.16 7.53 5.61 86.38 0.48 8.01 16 15 C 0.03 1.39 5.09 29.85 0.15 1.54 16 16 C -0.55 -31.33 9.11 25.60 0.23 -31.10 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.01 0.40 5.46 84.65 0.46 0.86 16 19 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 20 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.18 3.99 0.77 3.95 0.00 3.99 16 25 C -0.15 -3.62 7.25 71.98 0.52 -3.10 16 26 C -0.15 -3.63 8.41 71.98 0.61 -3.02 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.54 6.21 -2.38 -0.01 0.52 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.50 8.13 -2.39 -0.02 0.48 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.58 5.09 -2.39 -0.01 0.56 16 34 H 0.05 0.47 7.95 -2.39 -0.02 0.45 16 35 H 0.05 0.55 6.94 -2.39 -0.02 0.53 16 36 H 0.07 0.79 7.48 -2.39 -0.02 0.78 16 37 H 0.07 0.86 6.56 -2.39 -0.02 0.85 16 38 H 0.08 1.10 7.07 -2.39 -0.02 1.09 16 39 H 0.11 1.02 5.72 -2.38 -0.01 1.00 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.45 7.30 -2.39 -0.02 1.43 16 42 H 0.40 13.64 6.95 -92.71 -0.64 12.99 16 43 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 48 H 0.09 1.60 6.61 -2.39 -0.02 1.58 16 49 H 0.03 1.07 6.77 -2.39 -0.02 1.05 16 50 H 0.05 1.27 7.59 -2.39 -0.02 1.25 16 51 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.03 1.11 6.90 -2.38 -0.02 1.10 16 53 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -69.92 391.08 3.97 -65.95 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.23 Total: 20.67 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 6.34 Total: 1.38 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -4.56 Total: -105.54 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.06 Total: -28.81 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.92 3.97 -65.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413446007.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.762 kcal (2) G-P(sol) polarization free energy of solvation -69.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds