Wall clock time and date at job start Fri Apr 10 2020 22:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47192 * 2 1 4 4 C 1.53000 * 109.47285 * 119.99898 * 2 1 3 5 5 C 1.53002 * 109.47289 * 239.99697 * 2 1 3 6 6 C 1.53002 * 109.46547 * 66.03371 * 5 2 1 7 7 H 1.08989 * 110.64471 * 48.88426 * 6 5 2 8 8 C 1.55163 * 110.72024 * 285.73827 * 6 5 2 9 9 C 1.55119 * 101.48550 * 206.27091 * 8 6 5 10 10 N 1.47425 * 104.94691 * 36.77725 * 9 8 6 11 11 C 1.34775 * 125.65301 * 156.03201 * 10 9 8 12 12 O 1.21590 * 119.99844 * 179.97438 * 11 10 9 13 13 N 1.34780 * 119.99834 * 359.95988 * 11 10 9 14 14 C 1.46492 * 119.99850 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47147 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.47416 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00160 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00408 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00211 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99781 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47329 * 89.99544 * 20 18 16 22 22 H 1.48501 * 109.47308 * 209.99689 * 20 18 16 23 23 H 1.48506 * 109.47115 * 329.99345 * 20 18 16 24 24 C 1.47028 * 108.70178 * 336.00107 * 10 9 8 25 25 C 1.52999 * 109.88041 * 241.64111 * 24 10 9 26 26 C 1.52990 * 110.01521 * 120.54695 * 24 10 9 27 27 H 1.08993 * 109.47590 * 43.03383 * 1 2 3 28 28 H 1.09001 * 109.47150 * 283.03411 * 1 2 3 29 29 H 1.09002 * 109.47062 * 163.04052 * 1 2 3 30 30 H 1.08996 * 109.47284 * 59.99812 * 3 2 1 31 31 H 1.09006 * 109.46926 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46906 * 299.99639 * 3 2 1 33 33 H 1.09003 * 109.47279 * 60.00043 * 4 2 1 34 34 H 1.09000 * 109.47360 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47388 * 299.99486 * 4 2 1 36 36 H 1.08996 * 109.47461 * 186.03403 * 5 2 1 37 37 H 1.08998 * 109.46667 * 306.03639 * 5 2 1 38 38 H 1.09003 * 111.00286 * 324.21400 * 8 6 5 39 39 H 1.08999 * 111.00201 * 88.06638 * 8 6 5 40 40 H 1.09002 * 110.21022 * 277.96029 * 9 8 6 41 41 H 1.09001 * 110.51742 * 155.75257 * 9 8 6 42 42 H 0.96998 * 119.99709 * 359.97438 * 13 11 10 43 43 H 1.09005 * 109.47523 * 300.00090 * 14 13 11 44 44 H 1.08998 * 109.47354 * 60.00395 * 14 13 11 45 45 H 1.09001 * 109.47435 * 300.00423 * 15 14 13 46 46 H 1.09004 * 109.47030 * 60.00245 * 15 14 13 47 47 H 0.97002 * 119.99322 * 180.02562 * 19 18 16 48 48 H 1.09003 * 109.47117 * 177.80584 * 25 24 10 49 49 H 1.09002 * 109.47418 * 297.80237 * 25 24 10 50 50 H 1.09003 * 109.47161 * 57.80532 * 25 24 10 51 51 H 1.09007 * 109.47442 * 302.11641 * 26 24 10 52 52 H 1.08996 * 109.47516 * 62.11248 * 26 24 10 53 53 H 1.08995 * 109.47631 * 182.11306 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0400 -0.7213 -1.2492 6 6 1.6575 0.0822 -2.4938 7 1 1.9270 1.1312 -2.3718 8 6 0.1429 -0.0638 -2.7974 9 6 0.1094 0.1850 -4.3282 10 7 1.3406 -0.4419 -4.8424 11 6 1.5323 -0.8792 -6.1027 12 8 2.5938 -1.3820 -6.4169 13 7 0.5471 -0.7594 -7.0147 14 6 0.7552 -1.2352 -8.3844 15 6 -0.5080 -0.9818 -9.2098 16 6 -0.2938 -1.4706 -10.6190 17 1 0.6489 -1.9179 -10.8981 18 6 -1.3015 -1.3480 -11.5520 19 7 -1.1147 -1.7751 -12.7817 20 14 -2.9322 -0.5752 -11.0693 21 1 -2.8746 0.8899 -11.3046 22 1 -4.0214 -1.1655 -11.8880 23 1 -3.1970 -0.8356 -9.6314 24 6 2.3253 -0.5104 -3.7527 25 6 3.5644 0.3090 -4.1188 26 6 2.7214 -1.9656 -3.4955 27 1 -0.3634 0.7511 -0.7012 28 1 -0.3633 0.2318 1.0012 29 1 -0.3633 -0.9830 -0.2998 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2493 34 1 3.1300 -0.7208 1.2495 35 1 1.6768 -0.2074 2.1393 36 1 3.1246 -0.8158 -1.1969 37 1 1.5911 -1.7130 -1.3048 38 1 -0.2086 -1.0674 -2.5582 39 1 -0.4369 0.6892 -2.2636 40 1 0.1133 1.2551 -4.5360 41 1 -0.7688 -0.2837 -4.7723 42 1 -0.2999 -0.3588 -6.7637 43 1 1.5939 -0.7012 -8.8312 44 1 0.9713 -2.3034 -8.3691 45 1 -1.3470 -1.5154 -8.7632 46 1 -0.7237 0.0866 -9.2251 47 1 -1.8236 -1.6885 -13.4381 48 1 4.2731 0.2857 -3.2910 49 1 4.0306 -0.1149 -5.0082 50 1 3.2723 1.3401 -4.3181 51 1 1.8318 -2.5469 -3.2530 52 1 3.1921 -2.3772 -4.3883 53 1 3.4225 -2.0095 -2.6621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413446008.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:35 Heat of formation + Delta-G solvation = -69.667218 kcal Electronic energy + Delta-G solvation = -27364.407917 eV Core-core repulsion = 23848.477566 eV Total energy + Delta-G solvation = -3515.930350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84328 -39.93238 -37.73703 -36.55992 -34.93981 -33.83495 -32.61840 -31.59658 -28.86704 -28.36470 -28.03299 -27.70113 -26.62964 -25.03042 -23.56773 -22.64079 -21.42765 -20.11429 -19.20759 -18.97588 -18.43989 -17.30926 -16.73634 -16.49184 -16.19037 -15.65529 -15.63175 -15.36138 -15.00896 -14.89501 -14.64495 -14.55025 -14.40719 -14.24056 -13.94834 -13.39273 -13.35762 -13.14296 -13.08090 -12.91957 -12.82661 -12.60277 -12.54345 -12.48530 -12.29767 -12.16215 -12.13273 -11.98953 -11.76449 -11.62419 -11.52295 -11.35031 -11.19513 -11.14989 -11.04274 -10.86048 -10.79293 -10.14857 -9.44028 -8.30400 -6.37819 1.38310 1.41353 1.52693 1.64952 2.19293 2.36581 3.04289 3.07958 3.51216 3.63953 3.76994 4.04113 4.09276 4.15986 4.23826 4.32580 4.34302 4.40902 4.43179 4.55907 4.63419 4.70563 4.72581 4.73556 4.74184 4.79869 4.87006 4.89153 4.94157 4.97194 5.01294 5.06724 5.08855 5.13178 5.17307 5.21920 5.26448 5.28793 5.34812 5.39568 5.41062 5.45281 5.49795 5.55723 5.59501 5.67246 5.68451 5.71553 6.14563 6.23408 6.69102 7.07038 7.26512 7.63899 8.86435 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.025738 B = 0.002724 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.643265 B =10277.493196 C =10932.138789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.094 4.094 6 C -0.080 4.080 7 H 0.102 0.898 8 C -0.119 4.119 9 C 0.085 3.915 10 N -0.629 5.629 11 C 0.712 3.288 12 O -0.632 6.632 13 N -0.734 5.734 14 C 0.167 3.833 15 C -0.009 4.009 16 C -0.539 4.539 17 H 0.028 0.972 18 C 0.003 3.997 19 N -0.950 5.950 20 Si 0.961 3.039 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.237 1.237 24 C 0.176 3.824 25 C -0.152 4.152 26 C -0.151 4.151 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.405 0.595 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.268 0.732 48 H 0.082 0.918 49 H 0.033 0.967 50 H 0.056 0.944 51 H 0.054 0.946 52 H 0.031 0.969 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 8.307 33.981 34.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.065 4.065 3 C -0.203 4.203 4 C -0.199 4.199 5 C -0.132 4.132 6 C -0.099 4.099 7 H 0.120 0.880 8 C -0.157 4.157 9 C -0.037 4.037 10 N -0.366 5.366 11 C 0.414 3.586 12 O -0.514 6.514 13 N -0.390 5.390 14 C 0.043 3.957 15 C -0.047 4.047 16 C -0.578 4.578 17 H 0.046 0.954 18 C -0.194 4.194 19 N -0.590 5.590 20 Si 0.783 3.217 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.160 1.160 24 C 0.092 3.908 25 C -0.210 4.210 26 C -0.209 4.209 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.133 0.867 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.241 0.759 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.077 0.923 48 H 0.101 0.899 49 H 0.052 0.948 50 H 0.075 0.925 51 H 0.073 0.927 52 H 0.050 0.950 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.479 7.887 33.492 34.440 hybrid contribution -0.541 -0.050 -0.952 1.097 sum 0.938 7.837 32.540 33.483 Atomic orbital electron populations 1.22214 0.94264 1.02265 1.01960 1.20506 0.96024 0.95585 0.94411 1.21991 1.00952 0.95302 1.02013 1.21880 1.00895 1.00159 0.96954 1.21739 1.01048 0.98365 0.92026 1.22373 0.94981 1.00990 0.91547 0.88047 1.23213 0.96137 1.03844 0.92473 1.22659 0.86423 0.98351 0.96294 1.47780 1.17713 1.63742 1.07405 1.15718 0.83525 0.78999 0.80368 1.90846 1.27781 1.52707 1.80020 1.45193 1.16938 1.66400 1.10470 1.20834 0.98418 0.97329 0.79152 1.19618 0.94123 0.97523 0.93418 1.21229 1.00723 1.40595 0.95203 0.95391 1.26096 1.03437 0.95433 0.94394 1.70080 1.35507 1.48655 1.04755 0.85516 0.77330 0.78842 0.80042 1.18919 1.21128 1.16045 1.21001 0.88445 0.95488 0.85873 1.22115 0.97765 0.99400 1.01732 1.22175 1.01578 0.95685 1.01493 0.91009 0.92971 0.92722 0.92602 0.92882 0.91844 0.92914 0.92822 0.92455 0.91499 0.91643 0.90458 0.86703 0.90419 0.90476 0.75856 0.94322 0.94348 0.94612 0.94745 0.92297 0.89902 0.94777 0.92503 0.92667 0.94965 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 7.25 71.98 0.52 -0.64 16 2 C -0.07 -0.56 0.80 -52.18 -0.04 -0.60 16 3 C -0.15 -1.18 7.93 71.98 0.57 -0.61 16 4 C -0.14 -1.24 8.40 71.98 0.60 -0.64 16 5 C -0.09 -1.01 2.62 30.60 0.08 -0.93 16 6 C -0.08 -1.02 2.08 -9.60 -0.02 -1.04 16 7 H 0.10 1.14 5.52 -2.39 -0.01 1.12 16 8 C -0.12 -1.34 4.82 32.06 0.15 -1.19 16 9 C 0.08 1.42 6.58 86.93 0.57 2.00 16 10 N -0.63 -16.15 2.82 -782.52 -2.21 -18.36 16 11 C 0.71 25.56 8.07 179.05 1.44 27.01 16 12 O -0.63 -28.21 13.97 -4.00 -0.06 -28.27 16 13 N -0.73 -25.71 5.52 -478.54 -2.64 -28.35 16 14 C 0.17 7.30 5.61 86.38 0.48 7.79 16 15 C -0.01 -0.41 4.16 29.85 0.12 -0.29 16 16 C -0.54 -31.51 9.66 25.60 0.25 -31.26 16 17 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 18 C 0.00 0.20 5.47 84.65 0.46 0.67 16 19 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 20 Si 0.96 42.79 27.47 68.60 1.88 44.67 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.24 -9.41 6.54 99.48 0.65 -8.76 16 24 C 0.18 3.76 0.77 3.95 0.00 3.77 16 25 C -0.15 -3.50 8.40 71.98 0.60 -2.89 16 26 C -0.15 -3.51 7.34 71.98 0.53 -2.98 16 27 H 0.07 0.45 5.21 -2.39 -0.01 0.44 16 28 H 0.05 0.40 8.03 -2.39 -0.02 0.38 16 29 H 0.05 0.46 7.51 -2.39 -0.02 0.44 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.06 0.48 6.10 -2.39 -0.01 0.47 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.75 7.11 -2.39 -0.02 0.73 16 37 H 0.06 0.78 6.84 -2.39 -0.02 0.77 16 38 H 0.08 0.92 7.54 -2.39 -0.02 0.90 16 39 H 0.11 0.76 5.71 -2.39 -0.01 0.75 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.23 7.29 -2.39 -0.02 1.21 16 42 H 0.41 11.47 6.95 -92.71 -0.64 10.83 16 43 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.04 1.55 7.20 -2.39 -0.02 1.54 16 46 H 0.03 1.48 7.57 -2.38 -0.02 1.46 16 47 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 48 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.03 1.06 6.90 -2.39 -0.02 1.04 16 50 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 51 H 0.05 1.23 7.66 -2.38 -0.02 1.21 16 52 H 0.03 1.01 6.77 -2.39 -0.02 0.99 16 53 H 0.09 1.53 6.44 -2.39 -0.02 1.52 16 Total: -1.00 -74.64 388.53 3.79 -70.85 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.17 Total: 20.93 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 6.34 Total: -1.84 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -4.55 Total: -106.34 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.06 Total: -28.27 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Total: -74.64 3.79 -70.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413446008.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.180 kcal (2) G-P(sol) polarization free energy of solvation -74.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds