Wall clock time and date at job start Fri Apr 10 2020 22:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47160 * 2 1 4 4 C 1.52998 * 109.47160 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46926 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47628 * 295.00334 * 5 4 3 7 7 C 1.52997 * 109.47317 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47060 * 59.99960 * 7 6 5 9 9 N 1.46499 * 109.46840 * 180.02562 * 8 7 6 10 10 C 1.34778 * 119.99771 * 204.99940 * 9 8 7 11 11 O 1.21279 * 120.00041 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99935 * 179.97438 * 10 9 8 13 13 H 1.09000 * 109.47310 * 40.00000 * 12 10 9 14 14 N 1.46904 * 109.47322 * 159.99557 * 12 10 9 15 15 C 1.52997 * 109.47380 * 280.00039 * 12 10 9 16 16 C 1.52997 * 109.47256 * 174.99805 * 15 12 10 17 17 C 1.50698 * 109.46949 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00596 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99639 * 180.02562 * 17 16 15 20 20 N 1.31525 * 119.99619 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00471 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47067 * 89.99780 * 21 19 17 23 23 H 1.48499 * 109.47296 * 210.00378 * 21 19 17 24 24 H 1.48506 * 109.46957 * 330.00332 * 21 19 17 25 25 C 1.53002 * 109.47233 * 299.99657 * 8 7 6 26 26 C 1.52997 * 109.46817 * 60.00194 * 25 8 7 27 27 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47396 * 299.99889 * 1 2 3 29 29 H 1.08998 * 109.47230 * 60.00140 * 1 2 3 30 30 H 1.09000 * 109.46936 * 239.99841 * 2 1 3 31 31 H 1.08998 * 109.47230 * 119.99860 * 2 1 3 32 32 H 1.09000 * 109.46875 * 59.99792 * 3 2 1 33 33 H 1.08998 * 109.46934 * 300.00041 * 3 2 1 34 34 H 1.09000 * 109.47396 * 60.00111 * 4 3 2 35 35 H 1.08998 * 109.47230 * 299.99860 * 4 3 2 36 36 H 1.09002 * 109.47097 * 55.00131 * 5 4 3 37 37 H 1.08996 * 109.46929 * 59.99225 * 6 5 4 38 38 H 1.09002 * 109.46716 * 300.00030 * 6 5 4 39 39 H 1.09002 * 109.47153 * 299.99641 * 7 6 5 40 40 H 1.09001 * 109.46832 * 179.97438 * 7 6 5 41 41 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 42 42 H 0.97006 * 120.00568 * 24.99713 * 9 8 7 43 43 H 1.00898 * 110.99988 * 296.05423 * 14 12 10 44 44 H 1.00899 * 110.99138 * 60.00023 * 14 12 10 45 45 H 1.09005 * 109.46769 * 295.00276 * 15 12 10 46 46 H 1.08998 * 109.46968 * 55.00025 * 15 12 10 47 47 H 1.08995 * 109.47584 * 299.99970 * 16 15 12 48 48 H 1.08998 * 109.46952 * 60.00211 * 16 15 12 49 49 H 0.96993 * 119.99633 * 179.97438 * 20 19 17 50 50 H 1.08993 * 109.47662 * 180.02562 * 25 8 7 51 51 H 1.09002 * 109.47075 * 300.00932 * 25 8 7 52 52 H 1.09002 * 109.47153 * 60.00231 * 26 25 8 53 53 H 1.09001 * 109.47289 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 6 3.6757 3.5684 -1.3078 7 6 4.1862 5.0107 -1.3087 8 6 5.7110 5.0120 -1.1827 9 7 6.1997 6.3931 -1.1829 10 6 7.4586 6.6623 -1.5819 11 8 8.1869 5.7612 -1.9403 12 6 7.9612 8.0830 -1.5827 13 1 7.5978 8.5975 -0.6931 14 7 9.4303 8.0828 -1.5821 15 6 7.4518 8.8036 -2.8325 16 6 7.8568 10.2778 -2.7720 17 6 7.3555 10.9873 -4.0033 18 1 6.8029 10.4416 -4.7538 19 6 7.6023 12.3334 -4.1718 20 7 7.1643 12.9528 -5.2462 21 14 8.5574 13.2776 -2.8735 22 1 10.0073 13.2256 -3.1902 23 1 8.1047 14.6918 -2.8568 24 1 8.3195 12.6659 -1.5414 25 6 6.1153 4.3287 0.1253 26 6 5.6048 2.8864 0.1261 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9288 0.8908 36 1 3.6449 3.4245 0.8413 37 1 2.5894 3.5669 -1.3979 38 1 4.1107 3.0289 -2.1492 39 1 3.7516 5.5504 -0.4673 40 1 3.8986 5.4973 -2.2406 41 1 6.1456 4.4723 -2.0239 42 1 5.6173 7.1138 -0.8959 43 1 9.7915 7.6696 -0.7355 44 1 9.7919 7.6112 -2.3975 45 1 7.8866 8.3434 -3.7198 46 1 6.3655 8.7269 -2.8786 47 1 7.4220 10.7380 -1.8847 48 1 8.9431 10.3545 -2.7258 49 1 7.3377 13.8997 -5.3646 50 1 7.2015 4.3300 0.2153 51 1 5.6806 4.8684 0.9666 52 1 6.0394 2.3467 -0.7153 53 1 5.8923 2.3997 1.0580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424098349.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:38 Heat of formation + Delta-G solvation = -98.902648 kcal Electronic energy + Delta-G solvation = -25883.602837 eV Core-core repulsion = 22366.404744 eV Total energy + Delta-G solvation = -3517.198094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.24537 -38.87323 -36.25580 -35.25678 -34.21699 -32.74574 -31.44594 -31.08137 -30.47144 -28.21153 -26.57984 -24.50165 -23.18829 -23.07704 -21.52005 -20.91714 -20.43896 -20.19332 -19.65768 -17.23253 -16.64694 -16.51722 -15.94972 -15.55672 -15.27258 -14.67325 -14.57103 -14.38698 -14.26101 -14.09445 -13.89425 -13.49433 -13.42989 -13.21646 -12.73951 -12.60194 -12.49563 -12.37412 -12.31418 -11.88633 -11.69455 -11.57604 -11.48207 -11.37133 -11.16222 -10.97693 -10.92023 -10.86607 -10.75263 -10.52028 -10.33865 -10.20364 -9.99187 -9.70015 -9.57101 -9.10538 -9.02847 -8.49629 -8.36197 -5.98657 -3.96101 2.75191 3.23687 3.38137 3.44500 3.50010 4.24702 4.36721 4.42622 4.52036 4.59338 4.67588 4.75950 4.81566 4.87215 4.92326 5.04167 5.06554 5.17601 5.19888 5.23401 5.24044 5.35548 5.36017 5.41115 5.42345 5.47491 5.49541 5.54263 5.64905 5.70661 5.73559 5.75903 5.82894 5.85635 5.88208 5.91788 5.97692 6.01056 6.12815 6.21254 6.31083 6.48283 6.53473 6.89316 7.27829 7.39879 7.54918 7.61165 7.68444 7.87523 8.31004 8.59056 9.06174 9.64413 11.14835 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.002150 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.859560 B =13019.727429 C =13804.733375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.089 4.089 6 C -0.111 4.111 7 C -0.128 4.128 8 C 0.144 3.856 9 N -0.727 5.727 10 C 0.485 3.515 11 O -0.553 6.553 12 C 0.074 3.926 13 H 0.097 0.903 14 N -0.811 5.811 15 C -0.087 4.087 16 C -0.004 4.004 17 C -0.521 4.521 18 H 0.069 0.931 19 C 0.065 3.935 20 N -0.906 5.906 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.265 1.265 25 C -0.127 4.127 26 C -0.110 4.110 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.402 0.598 43 H 0.334 0.666 44 H 0.349 0.651 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.012 0.988 48 H 0.029 0.971 49 H 0.262 0.738 50 H 0.065 0.935 51 H 0.062 0.938 52 H 0.063 0.937 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.196 -24.637 14.585 30.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.153 4.153 5 C -0.107 4.107 6 C -0.149 4.149 7 C -0.166 4.166 8 C 0.039 3.961 9 N -0.379 5.379 10 C 0.271 3.729 11 O -0.431 6.431 12 C -0.042 4.042 13 H 0.115 0.885 14 N -0.339 5.339 15 C -0.125 4.125 16 C -0.042 4.042 17 C -0.559 4.559 18 H 0.087 0.913 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.711 3.289 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.189 1.189 25 C -0.166 4.166 26 C -0.149 4.149 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.236 0.764 43 H 0.146 0.854 44 H 0.164 0.836 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.031 0.969 48 H 0.047 0.953 49 H 0.071 0.929 50 H 0.084 0.916 51 H 0.081 0.919 52 H 0.082 0.918 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.713 -24.296 14.194 29.768 hybrid contribution 0.053 -0.125 0.756 0.768 sum -9.660 -24.421 14.950 30.220 Atomic orbital electron populations 1.21782 0.95990 1.01503 1.01828 1.21544 0.95789 0.97135 1.01874 1.21682 0.95494 0.96572 1.02199 1.21645 0.95316 0.96296 1.02017 1.21219 0.95501 0.95834 0.98141 1.21577 1.00864 0.94776 0.97644 1.21819 0.94233 0.97752 1.02770 1.20945 0.93833 0.82912 0.98428 1.46250 1.14625 1.09101 1.67887 1.22586 0.81539 0.93556 0.75264 1.90644 1.56265 1.48263 1.47898 1.21859 0.89770 0.89665 1.02883 0.88524 1.59037 1.04579 1.62277 1.08042 1.21459 0.99465 0.98311 0.93287 1.19482 0.97502 0.90194 0.97006 1.21189 1.35472 0.94269 1.04974 0.91320 1.25025 0.95449 0.97711 0.95383 1.69930 1.46906 1.10348 1.27397 0.86725 0.80542 0.78685 0.82975 1.20299 1.21729 1.18914 1.21900 1.01345 0.95764 0.97581 1.21538 0.94991 0.96328 1.02001 0.92916 0.92814 0.92724 0.92123 0.92229 0.92122 0.91669 0.91950 0.92079 0.91149 0.91277 0.91716 0.91396 0.91031 0.89752 0.76414 0.85393 0.83643 0.92279 0.92205 0.96924 0.95251 0.92861 0.91633 0.91938 0.91788 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.45 16 2 C -0.13 -0.70 5.93 -26.73 -0.16 -0.86 16 3 C -0.12 -0.71 4.97 -26.73 -0.13 -0.84 16 4 C -0.12 -0.71 4.68 -26.73 -0.13 -0.84 16 5 C -0.09 -0.61 2.19 -90.62 -0.20 -0.81 16 6 C -0.11 -0.81 4.96 -26.73 -0.13 -0.95 16 7 C -0.13 -1.08 5.39 -26.73 -0.14 -1.23 16 8 C 0.14 1.54 2.45 -67.93 -0.17 1.37 16 9 N -0.73 -8.66 5.08 -53.81 -0.27 -8.93 16 10 C 0.48 7.30 7.03 -10.98 -0.08 7.22 16 11 O -0.55 -9.88 15.91 5.56 0.09 -9.79 16 12 C 0.07 1.17 3.15 -68.86 -0.22 0.95 16 13 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 14 N -0.81 -12.83 8.44 -5.65 -0.05 -12.88 16 15 C -0.09 -1.68 4.78 -26.73 -0.13 -1.81 16 16 C 0.00 -0.10 3.93 -27.89 -0.11 -0.21 16 17 C -0.52 -14.92 9.66 -34.44 -0.33 -15.26 16 18 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 19 C 0.06 1.91 5.47 -17.81 -0.10 1.82 16 20 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 21 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 25 C -0.13 -1.24 5.49 -26.73 -0.15 -1.38 16 26 C -0.11 -0.89 5.20 -26.73 -0.14 -1.03 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.46 6.56 -51.93 -0.34 0.12 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.10 7.58 -51.93 -0.39 0.71 16 42 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 43 H 0.33 4.56 9.06 -39.29 -0.36 4.21 16 44 H 0.35 5.69 8.58 -39.29 -0.34 5.35 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 48 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 49 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 52 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 53 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 409.15 15.07 6.17 6.17 Total: -1.00 -32.44 409.15 -10.38 -42.82 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -10.49 Total: 6.92 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.94 Total: -14.30 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.45 Total: -49.28 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.44 -10.38 -42.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098349.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.080 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds