Wall clock time and date at job start Fri Apr 10 2020 22:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47160 * 2 1 4 4 C 1.52998 * 109.47160 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46926 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47628 * 295.00334 * 5 4 3 7 7 C 1.52997 * 109.47317 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47060 * 59.99960 * 7 6 5 9 9 N 1.46499 * 109.46840 * 180.02562 * 8 7 6 10 10 C 1.34778 * 119.99771 * 204.99940 * 9 8 7 11 11 O 1.21279 * 120.00041 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99935 * 179.97438 * 10 9 8 13 13 H 1.09000 * 109.47310 * 40.00000 * 12 10 9 14 14 N 1.46904 * 109.47322 * 159.99557 * 12 10 9 15 15 C 1.52997 * 109.47380 * 280.00039 * 12 10 9 16 16 C 1.52997 * 109.47256 * 174.99805 * 15 12 10 17 17 C 1.50698 * 109.46949 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00596 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99639 * 180.02562 * 17 16 15 20 20 N 1.31525 * 119.99619 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00471 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47067 * 89.99780 * 21 19 17 23 23 H 1.48499 * 109.47296 * 210.00378 * 21 19 17 24 24 H 1.48506 * 109.46957 * 330.00332 * 21 19 17 25 25 C 1.53002 * 109.47233 * 299.99657 * 8 7 6 26 26 C 1.52997 * 109.46817 * 60.00194 * 25 8 7 27 27 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47396 * 299.99889 * 1 2 3 29 29 H 1.08998 * 109.47230 * 60.00140 * 1 2 3 30 30 H 1.09000 * 109.46936 * 239.99841 * 2 1 3 31 31 H 1.08998 * 109.47230 * 119.99860 * 2 1 3 32 32 H 1.09000 * 109.46875 * 59.99792 * 3 2 1 33 33 H 1.08998 * 109.46934 * 300.00041 * 3 2 1 34 34 H 1.09000 * 109.47396 * 60.00111 * 4 3 2 35 35 H 1.08998 * 109.47230 * 299.99860 * 4 3 2 36 36 H 1.09002 * 109.47097 * 55.00131 * 5 4 3 37 37 H 1.08996 * 109.46929 * 59.99225 * 6 5 4 38 38 H 1.09002 * 109.46716 * 300.00030 * 6 5 4 39 39 H 1.09002 * 109.47153 * 299.99641 * 7 6 5 40 40 H 1.09001 * 109.46832 * 179.97438 * 7 6 5 41 41 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 42 42 H 0.97006 * 120.00568 * 24.99713 * 9 8 7 43 43 H 1.00898 * 110.99988 * 296.05423 * 14 12 10 44 44 H 1.00899 * 110.99138 * 60.00023 * 14 12 10 45 45 H 1.09005 * 109.46769 * 295.00276 * 15 12 10 46 46 H 1.08998 * 109.46968 * 55.00025 * 15 12 10 47 47 H 1.08995 * 109.47584 * 299.99970 * 16 15 12 48 48 H 1.08998 * 109.46952 * 60.00211 * 16 15 12 49 49 H 0.96993 * 119.99633 * 179.97438 * 20 19 17 50 50 H 1.08993 * 109.47662 * 180.02562 * 25 8 7 51 51 H 1.09002 * 109.47075 * 300.00932 * 25 8 7 52 52 H 1.09002 * 109.47153 * 60.00231 * 26 25 8 53 53 H 1.09001 * 109.47289 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 6 3.6757 3.5684 -1.3078 7 6 4.1862 5.0107 -1.3087 8 6 5.7110 5.0120 -1.1827 9 7 6.1997 6.3931 -1.1829 10 6 7.4586 6.6623 -1.5819 11 8 8.1869 5.7612 -1.9403 12 6 7.9612 8.0830 -1.5827 13 1 7.5978 8.5975 -0.6931 14 7 9.4303 8.0828 -1.5821 15 6 7.4518 8.8036 -2.8325 16 6 7.8568 10.2778 -2.7720 17 6 7.3555 10.9873 -4.0033 18 1 6.8029 10.4416 -4.7538 19 6 7.6023 12.3334 -4.1718 20 7 7.1643 12.9528 -5.2462 21 14 8.5574 13.2776 -2.8735 22 1 10.0073 13.2256 -3.1902 23 1 8.1047 14.6918 -2.8568 24 1 8.3195 12.6659 -1.5414 25 6 6.1153 4.3287 0.1253 26 6 5.6048 2.8864 0.1261 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9288 0.8908 36 1 3.6449 3.4245 0.8413 37 1 2.5894 3.5669 -1.3979 38 1 4.1107 3.0289 -2.1492 39 1 3.7516 5.5504 -0.4673 40 1 3.8986 5.4973 -2.2406 41 1 6.1456 4.4723 -2.0239 42 1 5.6173 7.1138 -0.8959 43 1 9.7915 7.6696 -0.7355 44 1 9.7919 7.6112 -2.3975 45 1 7.8866 8.3434 -3.7198 46 1 6.3655 8.7269 -2.8786 47 1 7.4220 10.7380 -1.8847 48 1 8.9431 10.3545 -2.7258 49 1 7.3377 13.8997 -5.3646 50 1 7.2015 4.3300 0.2153 51 1 5.6806 4.8684 0.9666 52 1 6.0394 2.3467 -0.7153 53 1 5.8923 2.3997 1.0580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424098349.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:37 Heat of formation + Delta-G solvation = -119.596256 kcal Electronic energy + Delta-G solvation = -25884.500180 eV Core-core repulsion = 22366.404744 eV Total energy + Delta-G solvation = -3518.095436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30390 -39.71681 -37.06946 -36.61133 -35.02750 -34.77501 -32.28423 -32.15211 -31.77002 -29.05250 -28.02579 -25.60307 -24.33452 -23.74882 -22.30453 -21.98321 -21.41283 -21.31500 -20.59953 -18.96580 -18.15816 -17.61984 -16.89929 -16.45442 -16.28967 -16.05166 -15.58256 -15.41406 -15.15162 -15.11702 -14.88150 -14.65331 -14.51641 -14.14615 -13.93899 -13.84929 -13.54158 -13.35903 -13.05948 -13.05320 -12.82306 -12.57906 -12.41171 -12.14246 -12.06206 -11.96566 -11.91136 -11.80413 -11.78798 -11.61086 -11.40969 -11.36411 -11.28257 -11.15946 -11.03641 -10.87749 -10.70717 -10.04782 -9.64680 -8.24801 -6.28026 1.41670 1.42876 1.53420 1.55741 2.20143 2.41560 3.11762 3.55803 3.64079 3.73204 3.73542 3.91746 4.06398 4.06764 4.12259 4.22179 4.26381 4.28090 4.35583 4.43187 4.49785 4.54985 4.60160 4.64050 4.71155 4.81828 4.83654 4.87156 4.90974 4.96999 5.02904 5.10717 5.12931 5.15409 5.19685 5.20678 5.23135 5.29709 5.32025 5.39220 5.47508 5.50207 5.53987 5.57503 5.62647 5.65815 5.73108 6.07151 6.32740 6.46479 6.55587 6.80529 7.19026 7.36405 8.92049 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.002150 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.859560 B =13019.727429 C =13804.733375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.111 4.111 5 C -0.082 4.082 6 C -0.109 4.109 7 C -0.122 4.122 8 C 0.142 3.858 9 N -0.714 5.714 10 C 0.487 3.513 11 O -0.584 6.584 12 C 0.084 3.916 13 H 0.120 0.880 14 N -0.819 5.819 15 C -0.079 4.079 16 C 0.003 3.997 17 C -0.532 4.532 18 H 0.028 0.972 19 C 0.002 3.998 20 N -0.955 5.955 21 Si 0.955 3.045 22 H -0.273 1.273 23 H -0.287 1.287 24 H -0.241 1.241 25 C -0.120 4.120 26 C -0.107 4.107 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.413 0.587 43 H 0.348 0.652 44 H 0.345 0.655 45 H 0.037 0.963 46 H 0.066 0.934 47 H 0.025 0.975 48 H 0.026 0.974 49 H 0.265 0.735 50 H 0.042 0.958 51 H 0.075 0.925 52 H 0.053 0.947 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.742 -24.997 17.419 32.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.149 4.149 5 C -0.100 4.100 6 C -0.146 4.146 7 C -0.160 4.160 8 C 0.038 3.962 9 N -0.365 5.365 10 C 0.272 3.728 11 O -0.465 6.465 12 C -0.032 4.032 13 H 0.138 0.862 14 N -0.348 5.348 15 C -0.117 4.117 16 C -0.035 4.035 17 C -0.570 4.570 18 H 0.046 0.954 19 C -0.194 4.194 20 N -0.596 5.596 21 Si 0.778 3.222 22 H -0.198 1.198 23 H -0.213 1.213 24 H -0.164 1.164 25 C -0.159 4.159 26 C -0.146 4.146 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.250 0.750 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.043 0.957 48 H 0.045 0.955 49 H 0.073 0.927 50 H 0.060 0.940 51 H 0.094 0.906 52 H 0.071 0.929 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.294 -24.676 17.058 31.715 hybrid contribution 0.169 -0.070 -0.217 0.283 sum -10.126 -24.745 16.842 31.599 Atomic orbital electron populations 1.21787 0.95785 1.01736 1.01844 1.21545 0.95983 0.97025 1.01846 1.21651 0.95056 0.96696 1.02235 1.21600 0.95613 0.95698 1.01983 1.21165 0.94450 0.96379 0.98024 1.21575 1.01498 0.93891 0.97679 1.21790 0.92283 0.98751 1.03131 1.21033 0.95253 0.81841 0.98082 1.46188 1.13669 1.10211 1.66444 1.22375 0.82248 0.92862 0.75278 1.90637 1.57347 1.48965 1.49519 1.21677 0.89936 0.89926 1.01659 0.86207 1.59029 1.04578 1.62523 1.08633 1.21254 0.99891 0.96065 0.94514 1.19368 0.97024 0.92275 0.94815 1.21573 1.34821 0.94622 1.05978 0.95395 1.26025 0.96634 0.98949 0.97822 1.70087 1.48755 1.10902 1.29827 0.85593 0.78726 0.77140 0.80728 1.19834 1.21254 1.16414 1.21824 0.99937 0.96922 0.97215 1.21520 0.95876 0.95086 1.02071 0.92627 0.92633 0.92859 0.92381 0.92058 0.91841 0.91815 0.92447 0.91699 0.90354 0.90035 0.92603 0.89741 0.91677 0.92504 0.75006 0.83864 0.84169 0.94365 0.91540 0.95692 0.95514 0.92664 0.93962 0.90604 0.92865 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.13 -1.23 5.93 30.59 0.18 -1.05 16 3 C -0.12 -1.16 4.97 30.59 0.15 -1.01 16 4 C -0.11 -1.18 4.68 30.59 0.14 -1.04 16 5 C -0.08 -0.96 2.19 -10.79 -0.02 -0.99 16 6 C -0.11 -1.42 4.96 30.59 0.15 -1.27 16 7 C -0.12 -1.85 5.39 30.59 0.16 -1.69 16 8 C 0.14 2.92 2.45 44.99 0.11 3.03 16 9 N -0.71 -16.00 5.08 -442.54 -2.25 -18.24 16 10 C 0.49 14.20 7.03 87.66 0.62 14.81 16 11 O -0.58 -20.86 15.91 -3.03 -0.05 -20.91 16 12 C 0.08 2.50 3.15 44.17 0.14 2.64 16 13 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 14 N -0.82 -24.69 8.44 -171.79 -1.45 -26.14 16 15 C -0.08 -3.00 4.78 30.59 0.15 -2.86 16 16 C 0.00 0.12 3.93 29.85 0.12 0.24 16 17 C -0.53 -30.91 9.66 25.60 0.25 -30.66 16 18 H 0.03 1.79 7.99 -2.91 -0.02 1.76 16 19 C 0.00 0.11 5.47 84.65 0.46 0.57 16 20 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 21 Si 0.95 44.97 27.47 68.60 1.88 46.85 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 25 C -0.12 -2.19 5.49 30.59 0.17 -2.02 16 26 C -0.11 -1.59 5.20 30.60 0.16 -1.43 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.65 6.56 -2.39 -0.02 0.63 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.90 6.56 -2.39 -0.02 0.88 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.51 7.58 -2.39 -0.02 1.49 16 42 H 0.41 7.33 8.60 -92.70 -0.80 6.53 16 43 H 0.35 8.86 9.06 -89.70 -0.81 8.05 16 44 H 0.34 11.05 8.58 -89.69 -0.77 10.28 16 45 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 48 H 0.03 1.25 7.18 -2.39 -0.02 1.23 16 49 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 50 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -70.93 409.15 0.53 -70.40 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -1.56 Total: 31.82 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 3.65 Total: -23.41 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -3.40 Total: -104.76 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.05 Total: -20.91 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Total: -70.93 0.53 -70.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098349.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.195 kcal (2) G-P(sol) polarization free energy of solvation -70.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds