Wall clock time and date at job start Fri Apr 10 2020 22:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47478 * 2 1 4 4 C 1.52999 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47102 * 294.99833 * 5 4 3 7 7 C 1.52996 * 109.46951 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47365 * 59.99890 * 7 6 5 9 9 N 1.46506 * 109.47039 * 179.97438 * 8 7 6 10 10 C 1.34771 * 120.00084 * 274.99914 * 9 8 7 11 11 O 1.21280 * 119.99939 * 359.97438 * 10 9 8 12 12 C 1.50696 * 119.99966 * 180.02562 * 10 9 8 13 13 H 1.08999 * 109.47410 * 319.99848 * 12 10 9 14 14 N 1.46903 * 109.47180 * 199.99728 * 12 10 9 15 15 C 1.53004 * 109.47479 * 79.99982 * 12 10 9 16 16 C 1.52995 * 109.47334 * 185.00315 * 15 12 10 17 17 C 1.50705 * 109.47240 * 179.97438 * 16 15 12 18 18 H 1.07997 * 119.99547 * 359.97438 * 17 16 15 19 19 C 1.37869 * 119.99821 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00633 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99839 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47177 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47546 * 120.00039 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00473 * 21 19 17 25 25 C 1.52996 * 109.47176 * 299.99973 * 8 7 6 26 26 C 1.52997 * 109.46646 * 174.99857 * 5 4 3 27 27 H 1.09004 * 109.46862 * 300.00040 * 1 2 3 28 28 H 1.09004 * 109.46998 * 59.99563 * 1 2 3 29 29 H 1.09002 * 109.47722 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46862 * 239.99959 * 2 1 3 31 31 H 1.09000 * 109.47250 * 119.99983 * 2 1 3 32 32 H 1.08993 * 109.46765 * 59.99818 * 3 2 1 33 33 H 1.09000 * 109.46866 * 300.00218 * 3 2 1 34 34 H 1.08993 * 109.47839 * 60.00073 * 4 3 2 35 35 H 1.09000 * 109.47160 * 299.99635 * 4 3 2 36 36 H 1.09000 * 109.47314 * 54.99967 * 5 4 3 37 37 H 1.09006 * 109.46822 * 299.99923 * 6 5 4 38 38 H 1.08997 * 109.47474 * 60.00037 * 6 5 4 39 39 H 1.08993 * 109.47243 * 299.99585 * 7 6 5 40 40 H 1.09007 * 109.46984 * 179.97438 * 7 6 5 41 41 H 1.09000 * 109.46998 * 59.99958 * 8 7 6 42 42 H 0.96995 * 119.99611 * 95.00009 * 9 8 7 43 43 H 1.00906 * 110.99565 * 176.04329 * 14 12 10 44 44 H 1.00897 * 111.00093 * 300.00130 * 14 12 10 45 45 H 1.09000 * 109.46864 * 305.00169 * 15 12 10 46 46 H 1.09000 * 109.46919 * 64.99836 * 15 12 10 47 47 H 1.09000 * 109.47026 * 299.99755 * 16 15 12 48 48 H 1.09000 * 109.47508 * 59.99882 * 16 15 12 49 49 H 0.96998 * 120.00238 * 179.97438 * 20 19 17 50 50 H 1.09006 * 109.46822 * 300.00209 * 25 8 7 51 51 H 1.08997 * 109.47474 * 180.02562 * 25 8 7 52 52 H 1.09004 * 109.47394 * 299.99282 * 26 5 4 53 53 H 1.08990 * 109.47621 * 60.00181 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 3.6748 3.5697 -1.3068 7 6 4.1853 5.0120 -1.3063 8 6 5.7102 5.0132 -1.1815 9 7 6.1991 6.3943 -1.1817 10 6 6.4233 7.0296 -2.3490 11 8 6.2208 6.4579 -3.3992 12 6 6.9267 8.4500 -2.3492 13 1 6.4261 9.0131 -1.5615 14 7 6.6429 9.0700 -3.6504 15 6 8.4363 8.4562 -2.0998 16 6 8.9268 9.9001 -1.9758 17 6 10.4136 9.9062 -1.7296 18 1 10.9543 8.9735 -1.6674 19 6 11.0832 11.1025 -1.5838 20 7 10.4246 12.2384 -1.6591 21 14 12.9262 11.1101 -1.2794 22 1 13.4268 9.7125 -1.2372 23 1 13.6060 11.8470 -2.3748 24 1 13.2111 11.7765 0.0168 25 6 6.1155 4.3285 0.1253 26 6 5.6049 2.8866 0.1251 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9285 0.8891 36 1 3.6458 3.4235 0.8423 37 1 4.1091 3.0311 -2.1491 38 1 2.5885 3.5685 -1.3959 39 1 3.7514 5.5508 -0.4641 40 1 3.8970 5.4998 -2.2376 41 1 6.1442 4.4745 -2.0238 42 1 6.3614 6.8514 -0.3418 43 1 6.9126 10.0423 -3.6542 44 1 7.0963 8.5659 -4.3977 45 1 8.6543 7.9180 -1.1774 46 1 8.9441 7.9702 -2.9329 47 1 8.7087 10.4384 -2.8982 48 1 8.4190 10.3862 -1.1428 49 1 10.8957 13.0800 -1.5562 50 1 5.6815 4.8673 0.9676 51 1 7.2018 4.3297 0.2145 52 1 5.8936 2.3988 1.0562 53 1 6.0392 2.3481 -0.7171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424098353.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:40 Heat of formation + Delta-G solvation = -102.801288 kcal Electronic energy + Delta-G solvation = -25837.054241 eV Core-core repulsion = 22319.687090 eV Total energy + Delta-G solvation = -3517.367151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.07635 -38.71777 -36.19652 -35.35322 -34.08145 -32.84238 -31.37713 -30.97814 -29.87213 -28.16042 -26.34228 -24.43641 -23.42858 -23.01327 -21.52802 -20.88798 -20.52901 -20.21718 -19.50394 -17.28332 -16.44223 -16.19826 -15.94349 -15.20296 -14.62569 -14.59649 -14.51314 -14.44445 -14.35993 -14.06725 -13.86979 -13.38323 -13.28994 -13.05953 -12.93722 -12.66103 -12.37185 -12.33870 -12.14721 -11.76503 -11.67783 -11.50068 -11.41064 -11.31297 -11.14551 -11.06371 -10.92772 -10.83828 -10.69050 -10.66327 -10.38069 -10.22593 -9.98629 -9.86262 -9.26129 -9.16493 -8.88083 -8.44535 -8.15703 -6.08875 -4.11934 2.99554 3.25738 3.31627 3.33893 3.37850 4.28660 4.39167 4.43340 4.53234 4.63224 4.75207 4.80307 4.88475 5.03464 5.09626 5.13949 5.19505 5.22999 5.27042 5.27671 5.31965 5.32646 5.42890 5.47072 5.52005 5.56057 5.59067 5.61457 5.69427 5.77215 5.79103 5.83726 5.84955 5.93127 5.93593 6.02778 6.05523 6.08594 6.21890 6.29521 6.30381 6.53391 6.66702 6.88552 7.46791 7.52800 7.62356 7.77283 7.88446 7.93044 8.31204 8.54201 8.94354 9.53081 11.02031 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.028989 B = 0.002044 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.643979 B =13693.937938 C =14325.701326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.089 4.089 6 C -0.111 4.111 7 C -0.129 4.129 8 C 0.147 3.853 9 N -0.732 5.732 10 C 0.526 3.474 11 O -0.539 6.539 12 C 0.074 3.926 13 H 0.095 0.905 14 N -0.831 5.831 15 C -0.137 4.137 16 C 0.023 3.977 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.127 4.127 26 C -0.110 4.110 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.400 0.600 43 H 0.353 0.647 44 H 0.345 0.655 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.261 0.739 50 H 0.067 0.933 51 H 0.070 0.930 52 H 0.065 0.935 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.700 -21.307 5.923 27.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.160 4.160 4 C -0.152 4.152 5 C -0.107 4.107 6 C -0.149 4.149 7 C -0.168 4.168 8 C 0.043 3.957 9 N -0.384 5.384 10 C 0.313 3.687 11 O -0.415 6.415 12 C -0.041 4.041 13 H 0.113 0.887 14 N -0.363 5.363 15 C -0.176 4.176 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.165 4.165 26 C -0.148 4.148 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.234 0.766 43 H 0.169 0.831 44 H 0.158 0.842 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.084 0.916 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.587 -21.691 5.301 28.423 hybrid contribution 2.191 0.556 0.625 2.345 sum -15.396 -21.135 5.926 26.811 Atomic orbital electron populations 1.21783 0.96033 1.01463 1.01816 1.21544 0.95756 0.97167 1.01853 1.21682 0.95557 0.96517 1.02212 1.21642 0.95303 0.96341 1.01957 1.21221 0.95397 0.95782 0.98324 1.21586 1.00678 0.95279 0.97352 1.21922 0.95414 0.96910 1.02515 1.20892 0.93834 0.82439 0.98568 1.46091 1.68710 1.14621 1.08990 1.20869 0.75831 0.88705 0.83271 1.90622 1.51520 1.67945 1.31439 1.21480 0.96945 0.91227 0.94477 0.88696 1.58746 1.66687 1.07532 1.03305 1.22369 0.91766 1.02356 1.01158 1.19113 0.96138 0.88857 0.97267 1.21227 0.93216 0.92405 1.49296 0.92668 1.25012 0.98410 0.95647 0.95257 1.69960 1.35787 0.97314 1.50130 0.86533 0.85504 0.78101 0.77856 1.19770 1.20938 1.20955 1.21802 1.01448 0.96214 0.97052 1.21514 0.95187 0.95919 1.02137 0.92822 0.92745 0.92938 0.92137 0.92230 0.92130 0.91679 0.91963 0.92101 0.91153 0.91844 0.91652 0.91955 0.91340 0.89784 0.76609 0.83137 0.84179 0.92575 0.92744 0.96388 0.96329 0.92947 0.91404 0.91150 0.91622 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.15 0.37 -0.49 16 2 C -0.13 -0.74 5.93 -26.73 -0.16 -0.90 16 3 C -0.12 -0.77 4.97 -26.73 -0.13 -0.90 16 4 C -0.11 -0.75 4.68 -26.73 -0.13 -0.87 16 5 C -0.09 -0.65 2.19 -90.62 -0.20 -0.85 16 6 C -0.11 -0.96 4.96 -26.74 -0.13 -1.09 16 7 C -0.13 -1.37 5.49 -26.73 -0.15 -1.52 16 8 C 0.15 1.69 2.45 -67.93 -0.17 1.52 16 9 N -0.73 -9.50 5.08 -53.81 -0.27 -9.77 16 10 C 0.53 8.77 7.04 -10.99 -0.08 8.69 16 11 O -0.54 -10.61 15.91 5.56 0.09 -10.52 16 12 C 0.07 1.27 3.21 -68.86 -0.22 1.05 16 13 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 14 N -0.83 -14.58 8.94 -5.65 -0.05 -14.63 16 15 C -0.14 -2.70 4.78 -26.73 -0.13 -2.83 16 16 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 17 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 21 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 C -0.13 -1.13 5.39 -26.75 -0.14 -1.28 16 26 C -0.11 -0.84 5.20 -26.75 -0.14 -0.98 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.14 7.58 -51.93 -0.39 0.75 16 42 H 0.40 4.41 8.60 -40.82 -0.35 4.06 16 43 H 0.35 6.20 7.55 -39.29 -0.30 5.91 16 44 H 0.35 6.15 8.58 -39.29 -0.34 5.81 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 53 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 410.80 15.07 6.19 6.19 Total: -1.00 -30.72 410.80 -10.69 -41.41 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -10.41 Total: 9.55 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.95 Total: -13.19 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.41 Total: -49.71 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -30.72 -10.69 -41.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098353.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.391 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds