Wall clock time and date at job start Fri Apr 10 2020 22:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47478 * 2 1 4 4 C 1.52999 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47102 * 294.99833 * 5 4 3 7 7 C 1.52996 * 109.46951 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47365 * 59.99890 * 7 6 5 9 9 N 1.46506 * 109.47039 * 179.97438 * 8 7 6 10 10 C 1.34771 * 120.00084 * 274.99914 * 9 8 7 11 11 O 1.21280 * 119.99939 * 359.97438 * 10 9 8 12 12 C 1.50696 * 119.99966 * 180.02562 * 10 9 8 13 13 H 1.08999 * 109.47410 * 319.99848 * 12 10 9 14 14 N 1.46903 * 109.47180 * 199.99728 * 12 10 9 15 15 C 1.53004 * 109.47479 * 79.99982 * 12 10 9 16 16 C 1.52995 * 109.47334 * 185.00315 * 15 12 10 17 17 C 1.50705 * 109.47240 * 179.97438 * 16 15 12 18 18 H 1.07997 * 119.99547 * 359.97438 * 17 16 15 19 19 C 1.37869 * 119.99821 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00633 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99839 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47177 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47546 * 120.00039 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00473 * 21 19 17 25 25 C 1.52996 * 109.47176 * 299.99973 * 8 7 6 26 26 C 1.52997 * 109.46646 * 174.99857 * 5 4 3 27 27 H 1.09004 * 109.46862 * 300.00040 * 1 2 3 28 28 H 1.09004 * 109.46998 * 59.99563 * 1 2 3 29 29 H 1.09002 * 109.47722 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46862 * 239.99959 * 2 1 3 31 31 H 1.09000 * 109.47250 * 119.99983 * 2 1 3 32 32 H 1.08993 * 109.46765 * 59.99818 * 3 2 1 33 33 H 1.09000 * 109.46866 * 300.00218 * 3 2 1 34 34 H 1.08993 * 109.47839 * 60.00073 * 4 3 2 35 35 H 1.09000 * 109.47160 * 299.99635 * 4 3 2 36 36 H 1.09000 * 109.47314 * 54.99967 * 5 4 3 37 37 H 1.09006 * 109.46822 * 299.99923 * 6 5 4 38 38 H 1.08997 * 109.47474 * 60.00037 * 6 5 4 39 39 H 1.08993 * 109.47243 * 299.99585 * 7 6 5 40 40 H 1.09007 * 109.46984 * 179.97438 * 7 6 5 41 41 H 1.09000 * 109.46998 * 59.99958 * 8 7 6 42 42 H 0.96995 * 119.99611 * 95.00009 * 9 8 7 43 43 H 1.00906 * 110.99565 * 176.04329 * 14 12 10 44 44 H 1.00897 * 111.00093 * 300.00130 * 14 12 10 45 45 H 1.09000 * 109.46864 * 305.00169 * 15 12 10 46 46 H 1.09000 * 109.46919 * 64.99836 * 15 12 10 47 47 H 1.09000 * 109.47026 * 299.99755 * 16 15 12 48 48 H 1.09000 * 109.47508 * 59.99882 * 16 15 12 49 49 H 0.96998 * 120.00238 * 179.97438 * 20 19 17 50 50 H 1.09006 * 109.46822 * 300.00209 * 25 8 7 51 51 H 1.08997 * 109.47474 * 180.02562 * 25 8 7 52 52 H 1.09004 * 109.47394 * 299.99282 * 26 5 4 53 53 H 1.08990 * 109.47621 * 60.00181 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 3.6748 3.5697 -1.3068 7 6 4.1853 5.0120 -1.3063 8 6 5.7102 5.0132 -1.1815 9 7 6.1991 6.3943 -1.1817 10 6 6.4233 7.0296 -2.3490 11 8 6.2208 6.4579 -3.3992 12 6 6.9267 8.4500 -2.3492 13 1 6.4261 9.0131 -1.5615 14 7 6.6429 9.0700 -3.6504 15 6 8.4363 8.4562 -2.0998 16 6 8.9268 9.9001 -1.9758 17 6 10.4136 9.9062 -1.7296 18 1 10.9543 8.9735 -1.6674 19 6 11.0832 11.1025 -1.5838 20 7 10.4246 12.2384 -1.6591 21 14 12.9262 11.1101 -1.2794 22 1 13.4268 9.7125 -1.2372 23 1 13.6060 11.8470 -2.3748 24 1 13.2111 11.7765 0.0168 25 6 6.1155 4.3285 0.1253 26 6 5.6049 2.8866 0.1251 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9285 0.8891 36 1 3.6458 3.4235 0.8423 37 1 4.1091 3.0311 -2.1491 38 1 2.5885 3.5685 -1.3959 39 1 3.7514 5.5508 -0.4641 40 1 3.8970 5.4998 -2.2376 41 1 6.1442 4.4745 -2.0238 42 1 6.3614 6.8514 -0.3418 43 1 6.9126 10.0423 -3.6542 44 1 7.0963 8.5659 -4.3977 45 1 8.6543 7.9180 -1.1774 46 1 8.9441 7.9702 -2.9329 47 1 8.7087 10.4384 -2.8982 48 1 8.4190 10.3862 -1.1428 49 1 10.8957 13.0800 -1.5562 50 1 5.6815 4.8673 0.9676 51 1 7.2018 4.3297 0.2145 52 1 5.8936 2.3988 1.0562 53 1 6.0392 2.3481 -0.7171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424098353.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:39 Heat of formation + Delta-G solvation = -120.984710 kcal Electronic energy + Delta-G solvation = -25837.842734 eV Core-core repulsion = 22319.687090 eV Total energy + Delta-G solvation = -3518.155644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.21564 -39.65815 -37.20411 -36.65391 -34.97974 -34.83203 -32.14255 -31.72874 -31.68612 -29.01884 -27.83198 -25.81493 -24.47302 -23.76887 -22.52785 -21.93430 -21.48393 -21.22800 -20.54114 -18.85135 -18.07086 -17.49607 -16.63346 -16.45733 -16.12175 -15.85804 -15.77482 -15.36238 -15.12367 -15.09119 -14.84336 -14.66818 -14.47189 -14.00810 -13.95929 -13.76026 -13.51831 -13.39085 -13.05447 -12.99831 -12.95041 -12.68830 -12.50654 -12.36809 -12.15349 -12.04404 -11.93181 -11.81645 -11.77823 -11.71052 -11.37278 -11.32999 -11.29058 -11.06160 -10.92889 -10.64297 -10.56908 -10.00549 -9.63787 -8.22009 -6.32440 1.38270 1.39878 1.51617 1.64176 2.16499 2.39669 3.11679 3.65651 3.70706 3.76196 3.80239 3.91190 4.07908 4.11142 4.15274 4.22242 4.25447 4.29181 4.38849 4.46727 4.52849 4.58395 4.62844 4.65532 4.66645 4.83411 4.84631 4.89318 4.92580 4.98811 5.04596 5.08424 5.13795 5.16647 5.22256 5.24358 5.25641 5.32228 5.33498 5.41730 5.46286 5.49584 5.55891 5.60543 5.64990 5.65862 5.80252 6.07395 6.20856 6.46953 6.58471 6.83207 7.28010 7.36844 8.88897 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.028989 B = 0.002044 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.643979 B =13693.937938 C =14325.701326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.111 4.111 5 C -0.083 4.083 6 C -0.106 4.106 7 C -0.123 4.123 8 C 0.145 3.855 9 N -0.717 5.717 10 C 0.527 3.473 11 O -0.573 6.573 12 C 0.080 3.920 13 H 0.109 0.891 14 N -0.830 5.830 15 C -0.120 4.120 16 C 0.029 3.971 17 C -0.545 4.545 18 H 0.055 0.945 19 C 0.006 3.994 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.277 1.277 25 C -0.120 4.120 26 C -0.107 4.107 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.060 0.940 42 H 0.412 0.588 43 H 0.352 0.648 44 H 0.343 0.657 45 H 0.066 0.934 46 H 0.042 0.958 47 H 0.002 0.998 48 H 0.003 0.997 49 H 0.264 0.736 50 H 0.083 0.917 51 H 0.068 0.932 52 H 0.082 0.918 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.648 -22.602 7.649 29.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.148 4.148 5 C -0.101 4.101 6 C -0.144 4.144 7 C -0.162 4.162 8 C 0.041 3.959 9 N -0.368 5.368 10 C 0.314 3.686 11 O -0.452 6.452 12 C -0.035 4.035 13 H 0.126 0.874 14 N -0.362 5.362 15 C -0.159 4.159 16 C -0.008 4.008 17 C -0.583 4.583 18 H 0.073 0.927 19 C -0.193 4.193 20 N -0.566 5.566 21 Si 0.785 3.215 22 H -0.190 1.190 23 H -0.206 1.206 24 H -0.202 1.202 25 C -0.158 4.158 26 C -0.145 4.145 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.248 0.752 43 H 0.167 0.833 44 H 0.156 0.844 45 H 0.085 0.915 46 H 0.061 0.939 47 H 0.020 0.980 48 H 0.021 0.979 49 H 0.073 0.927 50 H 0.101 0.899 51 H 0.087 0.913 52 H 0.100 0.900 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.544 -23.004 7.064 29.781 hybrid contribution 2.136 0.959 0.083 2.343 sum -15.409 -22.045 7.147 27.830 Atomic orbital electron populations 1.21790 0.95873 1.01750 1.01762 1.21541 0.95921 0.96915 1.01933 1.21660 0.95383 0.96734 1.02014 1.21597 0.95389 0.95660 1.02167 1.21173 0.95203 0.96251 0.97468 1.21554 1.00975 0.93897 0.98015 1.21853 0.94769 0.98186 1.01383 1.21027 0.94246 0.81254 0.99349 1.46023 1.67226 1.15174 1.08422 1.20703 0.75861 0.88315 0.83765 1.90612 1.53299 1.68466 1.32834 1.21425 0.95263 0.92144 0.94679 0.87358 1.58761 1.66485 1.07444 1.03478 1.22119 0.93415 0.99226 1.01188 1.18981 0.94820 0.91330 0.95682 1.21654 0.94912 0.92525 1.49202 0.92722 1.25862 1.03137 0.95306 0.94988 1.70068 1.37673 0.97914 1.50976 0.85483 0.79820 0.78371 0.77876 1.19015 1.20577 1.20216 1.21773 1.01483 0.96872 0.95690 1.21519 0.95279 0.94998 1.02743 0.92657 0.93024 0.92520 0.92360 0.91846 0.91907 0.92268 0.92382 0.91257 0.90459 0.92830 0.90953 0.90826 0.94264 0.92213 0.75168 0.83309 0.84412 0.91498 0.93913 0.97974 0.97869 0.92738 0.89872 0.91328 0.89979 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.13 -1.30 5.93 30.59 0.18 -1.11 16 3 C -0.12 -1.31 4.97 30.60 0.15 -1.16 16 4 C -0.11 -1.22 4.68 30.60 0.14 -1.08 16 5 C -0.08 -1.04 2.19 -10.79 -0.02 -1.06 16 6 C -0.11 -1.74 4.96 30.59 0.15 -1.59 16 7 C -0.12 -2.54 5.49 30.59 0.17 -2.37 16 8 C 0.15 3.22 2.45 44.99 0.11 3.33 16 9 N -0.72 -17.90 5.08 -442.54 -2.25 -20.14 16 10 C 0.53 17.42 7.04 87.66 0.62 18.04 16 11 O -0.57 -22.85 15.91 -3.03 -0.05 -22.90 16 12 C 0.08 2.73 3.21 44.17 0.14 2.87 16 13 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 14 N -0.83 -29.37 8.94 -171.80 -1.54 -30.90 16 15 C -0.12 -4.70 4.78 30.59 0.15 -4.55 16 16 C 0.03 1.43 4.74 29.85 0.14 1.57 16 17 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 18 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 19 C 0.01 0.31 5.46 84.65 0.46 0.77 16 20 N -0.93 -54.33 13.29 21.44 0.28 -54.04 16 21 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 C -0.12 -1.89 5.39 30.58 0.16 -1.73 16 26 C -0.11 -1.42 5.20 30.58 0.16 -1.26 16 27 H 0.05 0.52 8.14 -2.38 -0.02 0.51 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.61 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.72 6.57 -2.39 -0.02 0.70 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.07 1.09 6.57 -2.39 -0.02 1.07 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.06 1.64 7.58 -2.39 -0.02 1.63 16 42 H 0.41 8.32 8.60 -92.71 -0.80 7.53 16 43 H 0.35 12.56 7.55 -89.69 -0.68 11.88 16 44 H 0.34 12.43 8.58 -89.70 -0.77 11.66 16 45 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.00 0.10 6.87 -2.39 -0.02 0.09 16 48 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 49 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 50 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 51 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -65.58 410.80 0.77 -64.81 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -1.37 Total: 37.69 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 3.66 Total: -19.94 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -3.50 Total: -105.09 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.05 Total: -22.90 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -65.58 0.77 -64.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098353.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.174 kcal (2) G-P(sol) polarization free energy of solvation -65.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds