Wall clock time and date at job start Fri Apr 10 2020 22:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46880 * 2 1 4 4 C 1.53004 * 109.46776 * 119.99578 * 2 1 3 5 5 C 1.52995 * 109.46735 * 174.04306 * 4 2 1 6 6 C 1.52997 * 110.01929 * 315.23159 * 5 4 2 7 7 N 1.46502 * 109.47353 * 180.02562 * 6 5 4 8 8 C 1.34781 * 119.99853 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00306 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99570 * 180.02562 * 8 7 6 11 11 H 1.09006 * 109.47509 * 39.99793 * 10 8 7 12 12 N 1.46901 * 109.47048 * 160.00043 * 10 8 7 13 13 C 1.53002 * 109.47034 * 279.99864 * 10 8 7 14 14 C 1.53004 * 109.46824 * 175.00339 * 13 10 8 15 15 C 1.50703 * 109.47091 * 180.02562 * 14 13 10 16 16 H 1.08007 * 119.99898 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00342 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00129 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99626 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46809 * 90.00689 * 19 17 15 21 21 H 1.48501 * 109.46755 * 210.00257 * 19 17 15 22 22 H 1.48497 * 109.47250 * 330.00152 * 19 17 15 23 23 C 1.54268 * 110.03540 * 76.62881 * 5 4 2 24 24 C 1.54964 * 104.16362 * 95.75188 * 23 5 4 25 25 C 1.54887 * 102.77593 * 37.88842 * 24 23 5 26 26 C 1.53880 * 110.02988 * 193.84079 * 5 4 2 27 27 H 1.09000 * 109.47504 * 300.00566 * 1 2 3 28 28 H 1.09005 * 109.46737 * 60.00466 * 1 2 3 29 29 H 1.09002 * 109.46693 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47461 * 239.99989 * 2 1 3 31 31 H 1.08998 * 109.47430 * 72.34191 * 3 2 1 32 32 H 1.09000 * 109.46783 * 192.34049 * 3 2 1 33 33 H 1.08997 * 109.46726 * 312.34198 * 3 2 1 34 34 H 1.08992 * 109.47242 * 54.04148 * 4 2 1 35 35 H 1.08996 * 109.46996 * 294.04308 * 4 2 1 36 36 H 1.08997 * 109.47320 * 300.00447 * 6 5 4 37 37 H 1.08999 * 109.47080 * 60.00322 * 6 5 4 38 38 H 0.97000 * 120.00093 * 0.02562 * 7 6 5 39 39 H 1.00899 * 111.00096 * 59.99861 * 12 10 8 40 40 H 1.00899 * 111.00104 * 183.95117 * 12 10 8 41 41 H 1.08995 * 109.47493 * 294.99911 * 13 10 8 42 42 H 1.09000 * 109.47302 * 55.00532 * 13 10 8 43 43 H 1.09004 * 109.46968 * 299.99449 * 14 13 10 44 44 H 1.08991 * 109.47584 * 60.00006 * 14 13 10 45 45 H 0.96997 * 119.99661 * 179.97438 * 18 17 15 46 46 H 1.09003 * 110.48408 * 214.39998 * 23 5 4 47 47 H 1.09004 * 110.48228 * 337.03587 * 23 5 4 48 48 H 1.09000 * 110.71349 * 279.57464 * 24 23 5 49 49 H 1.08997 * 110.92083 * 156.29722 * 24 23 5 50 50 H 1.09002 * 110.48615 * 203.40483 * 25 24 23 51 51 H 1.08998 * 110.48462 * 80.76283 * 25 24 23 52 52 H 1.08994 * 110.03220 * 359.95471 * 26 5 4 53 53 H 1.09004 * 110.02714 * 121.38254 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5626 -0.8521 1.1767 6 6 3.9830 -1.3072 -0.2222 7 7 5.4419 -1.4291 -0.2782 8 6 6.0422 -1.8186 -1.4203 9 8 5.3748 -2.0676 -2.4019 10 6 7.5428 -1.9446 -1.4777 11 1 7.9067 -2.3810 -0.5474 12 7 7.9189 -2.8092 -2.6042 13 6 8.1640 -0.5594 -1.6684 14 6 9.6886 -0.6707 -1.6020 15 6 10.3005 0.6937 -1.7893 16 1 9.6655 1.5541 -1.9409 17 6 11.6709 0.8435 -1.7680 18 7 12.2048 2.0342 -1.9319 19 14 12.7691 -0.6447 -1.5065 20 1 13.1047 -1.2493 -2.8206 21 1 14.0179 -0.2241 -0.8218 22 1 12.0579 -1.6437 -0.6690 23 6 4.2260 0.4990 1.5146 24 6 4.5612 0.3900 3.0237 25 6 5.0025 -1.0874 3.1706 26 6 4.0557 -1.8605 2.2294 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8935 -0.5138 -0.8900 31 1 1.8672 1.8891 0.9792 32 1 3.1076 1.4505 -0.2196 33 1 1.5085 2.0158 -0.7596 34 1 1.5922 -1.7133 1.3044 35 1 1.7663 -0.1494 2.1360 36 1 3.5293 -2.2736 -0.4416 37 1 3.6509 -0.5745 -0.9577 38 1 5.9758 -1.2296 0.5067 39 1 7.5927 -2.4260 -3.4788 40 1 8.9161 -2.9618 -2.6258 41 1 7.8709 -0.1603 -2.6394 42 1 7.8138 0.1075 -0.8806 43 1 9.9818 -1.0698 -0.6310 44 1 10.0389 -1.3376 -2.3897 45 1 13.1689 2.1396 -1.9166 46 1 5.1364 0.6336 0.9305 47 1 3.5318 1.3201 1.3355 48 1 3.6784 0.5917 3.6303 49 1 5.3745 1.0645 3.2914 50 1 4.8749 -1.4231 4.1998 51 1 6.0383 -1.2095 2.8541 52 1 3.2103 -2.2558 2.7924 53 1 4.5945 -2.6739 1.7435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424123404.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:43 Heat of formation + Delta-G solvation = -73.171374 kcal Electronic energy + Delta-G solvation = -27369.792004 eV Core-core repulsion = 23853.709702 eV Total energy + Delta-G solvation = -3516.082302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58567 -39.07291 -35.80394 -35.61597 -34.16514 -32.79842 -30.75915 -30.30853 -29.28428 -27.46834 -27.16027 -25.86904 -24.84514 -23.27211 -21.00412 -20.50294 -20.24460 -19.86777 -18.88603 -17.41427 -16.66018 -16.47727 -15.85491 -15.18384 -14.99686 -14.86362 -14.46260 -14.24084 -14.14409 -13.91483 -13.80236 -13.61071 -13.13205 -13.09714 -12.79477 -12.66622 -12.51965 -12.34575 -12.25513 -12.06020 -11.86697 -11.35636 -11.29100 -11.26364 -11.03415 -10.98024 -10.86329 -10.66544 -10.57563 -10.46916 -10.33415 -10.17010 -10.10725 -9.87000 -9.37272 -9.31593 -8.89977 -8.62379 -8.29976 -6.11981 -4.11438 2.93607 3.24868 3.30808 3.33104 3.34424 4.24073 4.33338 4.37419 4.43846 4.69333 4.75598 4.82115 4.96371 5.06737 5.10919 5.13554 5.21162 5.25643 5.27372 5.32768 5.41115 5.43075 5.47122 5.50706 5.53377 5.60496 5.62408 5.67491 5.71590 5.73432 5.76554 5.83678 5.87814 5.92449 5.97706 6.10506 6.12397 6.14547 6.18212 6.20438 6.22314 6.34050 6.59107 6.66480 7.09039 7.22261 7.35657 7.66577 7.69948 7.79355 8.44173 8.47795 8.92062 9.49396 11.01275 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.003201 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.770061 B = 8746.361292 C = 9126.243022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.156 4.156 4 C -0.096 4.096 5 C -0.070 4.070 6 C 0.129 3.871 7 N -0.731 5.731 8 C 0.524 3.476 9 O -0.539 6.539 10 C 0.071 3.929 11 H 0.095 0.905 12 N -0.831 5.831 13 C -0.129 4.129 14 C -0.010 4.010 15 C -0.523 4.523 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.901 5.901 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.142 4.142 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.120 4.120 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.400 0.600 39 H 0.348 0.652 40 H 0.349 0.651 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.018 0.982 44 H 0.011 0.989 45 H 0.264 0.736 46 H 0.072 0.928 47 H 0.091 0.909 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.065 0.935 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.974 -5.778 10.447 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.213 4.213 4 C -0.134 4.134 5 C -0.070 4.070 6 C 0.006 3.994 7 N -0.385 5.385 8 C 0.311 3.689 9 O -0.415 6.415 10 C -0.044 4.044 11 H 0.113 0.887 12 N -0.362 5.362 13 C -0.168 4.168 14 C -0.048 4.048 15 C -0.561 4.561 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.179 4.179 24 C -0.162 4.162 25 C -0.165 4.165 26 C -0.158 4.158 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.236 0.764 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.036 0.964 44 H 0.029 0.971 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.085 0.915 52 H 0.084 0.916 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.749 -6.435 10.067 24.815 hybrid contribution 1.547 0.292 0.220 1.590 sum -20.202 -6.143 10.286 23.488 Atomic orbital electron populations 1.21845 0.95400 1.01537 1.01605 1.21284 0.95535 0.96687 0.98906 1.22198 1.01873 0.95847 1.01394 1.21693 0.93151 1.00563 0.97968 1.21428 0.95768 0.95803 0.94049 1.21482 0.80446 1.01168 0.96346 1.46064 1.07619 1.70402 1.14416 1.20751 0.90444 0.75308 0.82419 1.90635 1.66383 1.49165 1.35273 1.21511 0.90652 0.95169 0.97093 0.88738 1.58730 1.20275 1.51042 1.06188 1.22189 0.98770 0.93759 1.02119 1.19572 0.90669 0.98146 0.96389 1.21069 0.92140 0.92999 1.49906 0.91079 1.25041 0.98162 0.95762 0.94475 1.69911 1.11608 1.22259 1.50181 0.86771 0.80177 0.83460 0.78822 1.20217 1.21340 1.18966 1.23109 1.01450 0.97218 0.96158 1.22505 1.00859 0.96429 0.96423 1.22393 0.99341 0.95423 0.99317 1.22337 0.99314 0.97781 0.96372 0.92890 0.92762 0.92843 0.90414 0.92469 0.91320 0.92993 0.91816 0.91375 0.91903 0.91033 0.76442 0.83860 0.83591 0.92092 0.91969 0.96387 0.97061 0.92637 0.90970 0.89060 0.91801 0.91444 0.91793 0.91504 0.91580 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.16 37.16 0.34 -0.69 16 2 C -0.11 -0.84 2.41 -90.61 -0.22 -1.05 16 3 C -0.16 -1.26 7.42 37.16 0.28 -0.98 16 4 C -0.10 -0.72 3.85 -26.73 -0.10 -0.82 16 5 C -0.07 -0.59 0.42 -153.39 -0.06 -0.66 16 6 C 0.13 1.43 3.60 -4.04 -0.01 1.42 16 7 N -0.73 -9.19 4.41 -60.30 -0.27 -9.46 16 8 C 0.52 8.45 7.08 -10.98 -0.08 8.37 16 9 O -0.54 -10.37 16.25 5.56 0.09 -10.28 16 10 C 0.07 1.15 3.21 -68.86 -0.22 0.93 16 11 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 12 N -0.83 -13.60 8.94 -5.65 -0.05 -13.65 16 13 C -0.13 -2.42 4.78 -26.73 -0.13 -2.55 16 14 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 15 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 16 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 19 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 23 C -0.14 -1.25 4.37 -25.03 -0.11 -1.36 16 24 C -0.12 -1.01 6.91 -24.70 -0.17 -1.18 16 25 C -0.13 -1.02 6.63 -25.07 -0.17 -1.19 16 26 C -0.12 -0.99 5.48 -25.61 -0.14 -1.13 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.72 5.98 -51.93 -0.31 0.41 16 31 H 0.06 0.42 7.29 -51.93 -0.38 0.04 16 32 H 0.07 0.62 5.44 -51.93 -0.28 0.34 16 33 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.06 0.46 7.98 -51.93 -0.41 0.05 16 35 H 0.07 0.48 7.98 -51.93 -0.41 0.07 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.87 5.64 -51.93 -0.29 0.58 16 38 H 0.40 4.47 6.79 -40.82 -0.28 4.19 16 39 H 0.35 5.83 8.58 -39.29 -0.34 5.49 16 40 H 0.35 5.51 7.55 -39.29 -0.30 5.21 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 44 H 0.01 0.25 6.29 -51.93 -0.33 -0.08 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 0.75 6.74 -51.93 -0.35 0.40 16 47 H 0.09 0.76 3.93 -51.93 -0.20 0.55 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.07 0.57 7.96 -51.93 -0.41 0.15 16 52 H 0.07 0.49 7.60 -51.93 -0.39 0.10 16 53 H 0.07 0.62 7.31 -51.93 -0.38 0.24 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -31.37 392.09 -9.23 -40.59 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -9.68 Total: 11.28 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -1.33 Total: -14.22 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.46 Total: -49.70 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.37 -9.23 -40.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424123404.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.579 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds