Wall clock time and date at job start Fri Apr 10 2020 22:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46880 * 2 1 4 4 C 1.53004 * 109.46776 * 119.99578 * 2 1 3 5 5 C 1.52995 * 109.46735 * 174.04306 * 4 2 1 6 6 C 1.52997 * 110.01929 * 315.23159 * 5 4 2 7 7 N 1.46502 * 109.47353 * 180.02562 * 6 5 4 8 8 C 1.34781 * 119.99853 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00306 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99570 * 180.02562 * 8 7 6 11 11 H 1.09006 * 109.47509 * 39.99793 * 10 8 7 12 12 N 1.46901 * 109.47048 * 160.00043 * 10 8 7 13 13 C 1.53002 * 109.47034 * 279.99864 * 10 8 7 14 14 C 1.53004 * 109.46824 * 175.00339 * 13 10 8 15 15 C 1.50703 * 109.47091 * 180.02562 * 14 13 10 16 16 H 1.08007 * 119.99898 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00342 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00129 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99626 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46809 * 90.00689 * 19 17 15 21 21 H 1.48501 * 109.46755 * 210.00257 * 19 17 15 22 22 H 1.48497 * 109.47250 * 330.00152 * 19 17 15 23 23 C 1.54268 * 110.03540 * 76.62881 * 5 4 2 24 24 C 1.54964 * 104.16362 * 95.75188 * 23 5 4 25 25 C 1.54887 * 102.77593 * 37.88842 * 24 23 5 26 26 C 1.53880 * 110.02988 * 193.84079 * 5 4 2 27 27 H 1.09000 * 109.47504 * 300.00566 * 1 2 3 28 28 H 1.09005 * 109.46737 * 60.00466 * 1 2 3 29 29 H 1.09002 * 109.46693 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47461 * 239.99989 * 2 1 3 31 31 H 1.08998 * 109.47430 * 72.34191 * 3 2 1 32 32 H 1.09000 * 109.46783 * 192.34049 * 3 2 1 33 33 H 1.08997 * 109.46726 * 312.34198 * 3 2 1 34 34 H 1.08992 * 109.47242 * 54.04148 * 4 2 1 35 35 H 1.08996 * 109.46996 * 294.04308 * 4 2 1 36 36 H 1.08997 * 109.47320 * 300.00447 * 6 5 4 37 37 H 1.08999 * 109.47080 * 60.00322 * 6 5 4 38 38 H 0.97000 * 120.00093 * 0.02562 * 7 6 5 39 39 H 1.00899 * 111.00096 * 59.99861 * 12 10 8 40 40 H 1.00899 * 111.00104 * 183.95117 * 12 10 8 41 41 H 1.08995 * 109.47493 * 294.99911 * 13 10 8 42 42 H 1.09000 * 109.47302 * 55.00532 * 13 10 8 43 43 H 1.09004 * 109.46968 * 299.99449 * 14 13 10 44 44 H 1.08991 * 109.47584 * 60.00006 * 14 13 10 45 45 H 0.96997 * 119.99661 * 179.97438 * 18 17 15 46 46 H 1.09003 * 110.48408 * 214.39998 * 23 5 4 47 47 H 1.09004 * 110.48228 * 337.03587 * 23 5 4 48 48 H 1.09000 * 110.71349 * 279.57464 * 24 23 5 49 49 H 1.08997 * 110.92083 * 156.29722 * 24 23 5 50 50 H 1.09002 * 110.48615 * 203.40483 * 25 24 23 51 51 H 1.08998 * 110.48462 * 80.76283 * 25 24 23 52 52 H 1.08994 * 110.03220 * 359.95471 * 26 5 4 53 53 H 1.09004 * 110.02714 * 121.38254 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5626 -0.8521 1.1767 6 6 3.9830 -1.3072 -0.2222 7 7 5.4419 -1.4291 -0.2782 8 6 6.0422 -1.8186 -1.4203 9 8 5.3748 -2.0676 -2.4019 10 6 7.5428 -1.9446 -1.4777 11 1 7.9067 -2.3810 -0.5474 12 7 7.9189 -2.8092 -2.6042 13 6 8.1640 -0.5594 -1.6684 14 6 9.6886 -0.6707 -1.6020 15 6 10.3005 0.6937 -1.7893 16 1 9.6655 1.5541 -1.9409 17 6 11.6709 0.8435 -1.7680 18 7 12.2048 2.0342 -1.9319 19 14 12.7691 -0.6447 -1.5065 20 1 13.1047 -1.2493 -2.8206 21 1 14.0179 -0.2241 -0.8218 22 1 12.0579 -1.6437 -0.6690 23 6 4.2260 0.4990 1.5146 24 6 4.5612 0.3900 3.0237 25 6 5.0025 -1.0874 3.1706 26 6 4.0557 -1.8605 2.2294 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8935 -0.5138 -0.8900 31 1 1.8672 1.8891 0.9792 32 1 3.1076 1.4505 -0.2196 33 1 1.5085 2.0158 -0.7596 34 1 1.5922 -1.7133 1.3044 35 1 1.7663 -0.1494 2.1360 36 1 3.5293 -2.2736 -0.4416 37 1 3.6509 -0.5745 -0.9577 38 1 5.9758 -1.2296 0.5067 39 1 7.5927 -2.4260 -3.4788 40 1 8.9161 -2.9618 -2.6258 41 1 7.8709 -0.1603 -2.6394 42 1 7.8138 0.1075 -0.8806 43 1 9.9818 -1.0698 -0.6310 44 1 10.0389 -1.3376 -2.3897 45 1 13.1689 2.1396 -1.9166 46 1 5.1364 0.6336 0.9305 47 1 3.5318 1.3201 1.3355 48 1 3.6784 0.5917 3.6303 49 1 5.3745 1.0645 3.2914 50 1 4.8749 -1.4231 4.1998 51 1 6.0383 -1.2095 2.8541 52 1 3.2103 -2.2558 2.7924 53 1 4.5945 -2.6739 1.7435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424123404.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:42 Heat of formation + Delta-G solvation = -93.144670 kcal Electronic energy + Delta-G solvation = -27370.658111 eV Core-core repulsion = 23853.709702 eV Total energy + Delta-G solvation = -3516.948409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50794 -40.18846 -37.14434 -36.44745 -35.26316 -34.81246 -32.08686 -31.54423 -29.94902 -28.77647 -27.80602 -27.08514 -25.70627 -24.74266 -22.21950 -21.65950 -21.13491 -20.87778 -19.72315 -19.06536 -18.31655 -17.43087 -16.72459 -16.32712 -16.08626 -16.00789 -15.95016 -15.61292 -15.17324 -14.93010 -14.76587 -14.60116 -14.48259 -14.32955 -14.08650 -13.77546 -13.56274 -13.23812 -13.06115 -13.01052 -12.86656 -12.73530 -12.65719 -12.08440 -11.96769 -11.92775 -11.92257 -11.72472 -11.67536 -11.52190 -11.41548 -11.34177 -11.23355 -11.18402 -10.86983 -10.78437 -10.73463 -10.02781 -9.66348 -8.30329 -6.35884 1.38197 1.39385 1.50920 1.62767 2.18500 2.35803 3.05310 3.54547 3.60120 3.71874 3.73241 3.85008 4.05570 4.08269 4.13186 4.16123 4.17799 4.35648 4.41624 4.51543 4.57401 4.58651 4.61757 4.71612 4.73544 4.79832 4.80798 4.88892 4.93870 4.96927 4.99718 5.03365 5.08210 5.11236 5.15858 5.20540 5.28774 5.33000 5.34567 5.39512 5.45727 5.48562 5.48999 5.54114 5.55106 5.60483 5.62133 6.05380 6.24658 6.48106 6.54816 6.72497 7.24914 7.28970 8.86513 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.003201 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.770061 B = 8746.361292 C = 9126.243022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C -0.155 4.155 4 C -0.091 4.091 5 C -0.060 4.060 6 C 0.130 3.870 7 N -0.715 5.715 8 C 0.522 3.478 9 O -0.574 6.574 10 C 0.080 3.920 11 H 0.117 0.883 12 N -0.830 5.830 13 C -0.117 4.117 14 C -0.005 4.005 15 C -0.534 4.534 16 H 0.026 0.974 17 C 0.003 3.997 18 N -0.953 5.953 19 Si 0.954 3.046 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.237 1.237 23 C -0.143 4.143 24 C -0.122 4.122 25 C -0.127 4.127 26 C -0.118 4.118 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.409 0.591 39 H 0.345 0.655 40 H 0.354 0.646 41 H 0.041 0.959 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.023 0.977 45 H 0.266 0.734 46 H 0.052 0.948 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.062 0.938 50 H 0.074 0.926 51 H 0.060 0.940 52 H 0.079 0.921 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.621 -7.845 12.389 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.212 4.212 4 C -0.128 4.128 5 C -0.061 4.061 6 C 0.007 3.993 7 N -0.368 5.368 8 C 0.308 3.692 9 O -0.453 6.453 10 C -0.035 4.035 11 H 0.135 0.865 12 N -0.362 5.362 13 C -0.157 4.157 14 C -0.043 4.043 15 C -0.572 4.572 16 H 0.044 0.956 17 C -0.194 4.194 18 N -0.593 5.593 19 Si 0.776 3.224 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.160 1.160 23 C -0.180 4.180 24 C -0.159 4.159 25 C -0.164 4.164 26 C -0.155 4.155 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.246 0.754 39 H 0.158 0.842 40 H 0.170 0.830 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.114 0.886 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.093 0.907 51 H 0.079 0.921 52 H 0.098 0.902 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.420 -8.505 12.044 26.834 hybrid contribution 1.682 1.054 -0.410 2.027 sum -20.737 -7.451 11.634 24.918 Atomic orbital electron populations 1.21820 0.94488 1.01897 1.01940 1.21253 0.96287 0.96345 0.98487 1.22180 1.00906 0.96142 1.01944 1.21673 0.92007 1.01081 0.98083 1.21367 0.96625 0.95712 0.92380 1.21564 0.79230 1.00563 0.97963 1.45989 1.08486 1.68641 1.13706 1.20752 0.90374 0.75284 0.82750 1.90623 1.66975 1.51052 1.36609 1.21442 0.90704 0.93341 0.98053 0.86543 1.58748 1.20624 1.50705 1.06074 1.22006 0.96861 0.95690 1.01141 1.19495 0.92438 0.95096 0.97234 1.21432 0.92142 0.94296 1.49363 0.95564 1.26073 0.99994 0.99201 0.94133 1.70080 1.12135 1.25138 1.51979 0.85612 0.77749 0.79547 0.79455 1.19320 1.21359 1.15982 1.23097 1.00730 0.97550 0.96647 1.22497 1.01256 0.96439 0.95727 1.22400 0.98900 0.95269 0.99881 1.22319 0.99752 0.97260 0.96189 0.91957 0.93048 0.92476 0.92177 0.91326 0.92700 0.93224 0.91157 0.90100 0.92520 0.92235 0.75406 0.84210 0.83048 0.94052 0.91904 0.95015 0.95857 0.92510 0.92904 0.88585 0.90527 0.91923 0.90688 0.92146 0.90239 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.16 71.98 0.66 -1.16 16 2 C -0.11 -1.57 2.41 -10.79 -0.03 -1.59 16 3 C -0.15 -2.40 7.42 71.98 0.53 -1.86 16 4 C -0.09 -1.18 3.85 30.59 0.12 -1.06 16 5 C -0.06 -0.94 0.42 -51.46 -0.02 -0.96 16 6 C 0.13 2.84 3.60 86.38 0.31 3.15 16 7 N -0.72 -17.51 4.41 -463.06 -2.04 -19.55 16 8 C 0.52 16.51 7.08 87.66 0.62 17.13 16 9 O -0.57 -22.10 16.25 -3.03 -0.05 -22.15 16 10 C 0.08 2.47 3.21 44.17 0.14 2.61 16 11 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 12 N -0.83 -25.86 8.94 -171.79 -1.54 -27.39 16 13 C -0.12 -4.36 4.78 30.60 0.15 -4.21 16 14 C -0.01 -0.22 3.81 29.85 0.11 -0.11 16 15 C -0.53 -30.06 9.66 25.60 0.25 -29.81 16 16 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 17 C 0.00 0.15 5.47 84.65 0.46 0.62 16 18 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 19 Si 0.95 42.60 27.47 68.60 1.88 44.48 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 22 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 23 C -0.14 -2.36 4.37 31.70 0.14 -2.22 16 24 C -0.12 -1.73 6.91 31.91 0.22 -1.51 16 25 C -0.13 -1.76 6.63 31.67 0.21 -1.55 16 26 C -0.12 -1.67 5.48 31.32 0.17 -1.50 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 1.11 5.98 -2.39 -0.01 1.10 16 31 H 0.07 0.89 7.29 -2.39 -0.02 0.88 16 32 H 0.05 1.00 5.44 -2.39 -0.01 0.98 16 33 H 0.05 0.78 8.09 -2.39 -0.02 0.76 16 34 H 0.07 0.85 7.98 -2.39 -0.02 0.83 16 35 H 0.08 0.90 7.98 -2.39 -0.02 0.88 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.48 5.64 -2.39 -0.01 1.46 16 38 H 0.41 8.66 6.79 -92.71 -0.63 8.03 16 39 H 0.34 11.30 8.58 -89.69 -0.77 10.53 16 40 H 0.35 10.33 7.55 -89.69 -0.68 9.65 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 44 H 0.02 0.96 6.29 -2.39 -0.02 0.95 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.05 1.08 6.74 -2.39 -0.02 1.06 16 47 H 0.10 1.49 3.93 -2.38 -0.01 1.48 16 48 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.06 0.92 7.96 -2.39 -0.02 0.90 16 52 H 0.08 0.95 7.60 -2.39 -0.02 0.93 16 53 H 0.06 0.97 7.31 -2.39 -0.02 0.95 16 Total: -1.00 -68.80 392.09 1.38 -67.42 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: -1.23 Total: 40.27 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 4.05 Total: -24.05 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -3.28 Total: -105.96 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.48 kcal Total: -68.80 1.38 -67.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424123404.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.724 kcal (2) G-P(sol) polarization free energy of solvation -68.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds