Wall clock time and date at job start Fri Apr 10 2020 22:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47196 * 2 1 4 4 C 1.52992 * 109.47386 * 120.00740 * 2 1 3 5 5 C 1.52993 * 109.47747 * 67.13643 * 4 2 1 6 6 C 1.53003 * 110.01611 * 52.31698 * 5 4 2 7 7 N 1.46504 * 109.47326 * 175.03874 * 6 5 4 8 8 C 1.34767 * 119.99965 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00260 * 0.27480 * 8 7 6 10 10 C 1.50699 * 120.00158 * 180.02562 * 8 7 6 11 11 H 1.09008 * 109.46835 * 319.99662 * 10 8 7 12 12 N 1.46903 * 109.47333 * 199.99771 * 10 8 7 13 13 C 1.52998 * 109.47335 * 79.99482 * 10 8 7 14 14 C 1.53004 * 109.46925 * 185.00200 * 13 10 8 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 13 10 16 16 H 1.08002 * 119.99683 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00328 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99868 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00158 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47314 * 60.00260 * 19 17 15 21 21 H 1.48501 * 109.47144 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47397 * 299.99739 * 19 17 15 23 23 C 1.54269 * 110.03715 * 173.70982 * 5 4 2 24 24 C 1.54969 * 104.15851 * 95.75389 * 23 5 4 25 25 C 1.54892 * 102.77510 * 37.89284 * 24 23 5 26 26 C 1.53882 * 110.03442 * 290.93075 * 5 4 2 27 27 H 1.08997 * 109.47272 * 48.70448 * 1 2 3 28 28 H 1.09007 * 109.47249 * 168.70490 * 1 2 3 29 29 H 1.08995 * 109.47054 * 288.69961 * 1 2 3 30 30 H 1.09008 * 109.46781 * 240.00463 * 2 1 3 31 31 H 1.09001 * 109.47096 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47021 * 300.00270 * 3 2 1 33 33 H 1.08998 * 109.47144 * 60.00022 * 3 2 1 34 34 H 1.09010 * 109.46675 * 307.13704 * 4 2 1 35 35 H 1.09001 * 109.47435 * 187.14190 * 4 2 1 36 36 H 1.09004 * 109.46916 * 55.03897 * 6 5 4 37 37 H 1.08993 * 109.47392 * 295.04160 * 6 5 4 38 38 H 0.96999 * 119.99719 * 0.02562 * 7 6 5 39 39 H 1.00896 * 110.99993 * 299.99820 * 12 10 8 40 40 H 1.00907 * 111.00032 * 63.95284 * 12 10 8 41 41 H 1.09003 * 109.47414 * 305.00385 * 13 10 8 42 42 H 1.08999 * 109.46865 * 65.00551 * 13 10 8 43 43 H 1.08993 * 109.47480 * 299.99825 * 14 13 10 44 44 H 1.08999 * 109.47063 * 60.00472 * 14 13 10 45 45 H 0.97008 * 120.00167 * 179.97438 * 18 17 15 46 46 H 1.09002 * 110.48659 * 214.40377 * 23 5 4 47 47 H 1.09000 * 110.48231 * 337.04663 * 23 5 4 48 48 H 1.09000 * 110.72165 * 279.58071 * 24 23 5 49 49 H 1.08995 * 110.92279 * 156.29578 * 24 23 5 50 50 H 1.09000 * 110.48586 * 203.40716 * 25 24 23 51 51 H 1.08999 * 110.48770 * 80.76019 * 25 24 23 52 52 H 1.09003 * 110.02846 * 359.94997 * 26 5 4 53 53 H 1.09003 * 110.03324 * 121.37690 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6818 -2.2062 1.1627 6 6 2.1639 -2.7847 -0.1692 7 7 1.9216 -4.2294 -0.1906 8 6 2.2690 -4.9550 -1.2718 9 8 2.7868 -4.4129 -2.2251 10 6 2.0192 -6.4410 -1.2940 11 1 2.2468 -6.8623 -0.3147 12 7 2.8783 -7.0669 -2.3080 13 6 0.5515 -6.7064 -1.6348 14 6 0.2681 -8.2067 -1.5354 15 6 -1.1777 -8.4681 -1.8705 16 1 -1.8292 -7.6464 -2.1290 17 6 -1.6686 -9.7563 -1.8481 18 7 -0.8752 -10.7569 -1.5338 19 14 -3.4606 -10.0803 -2.2642 20 1 -3.7401 -9.6139 -3.6461 21 1 -3.7357 -11.5364 -2.1675 22 1 -4.3308 -9.3483 -1.3091 23 6 2.3247 -2.9742 2.3360 24 6 1.2027 -3.0452 3.4027 25 6 -0.0699 -3.2640 2.5472 26 6 0.1599 -2.3900 1.2969 27 1 -0.3633 0.6782 -0.7721 28 1 -0.3634 -1.0078 -0.2013 29 1 -0.3633 0.3295 0.9734 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5762 -0.2866 2.1346 35 1 3.1226 -0.6121 1.3153 36 1 3.2310 -2.5935 -0.2833 37 1 1.6208 -2.3130 -0.9881 38 1 1.5111 -4.6636 0.5735 39 1 2.6865 -6.6928 -3.2252 40 1 3.8535 -6.9611 -2.0710 41 1 -0.0873 -6.1687 -0.9341 42 1 0.3465 -6.3644 -2.6493 43 1 0.9068 -8.7443 -2.2361 44 1 0.4731 -8.5487 -0.5209 45 1 -1.2206 -11.6632 -1.5177 46 1 2.6162 -3.9765 2.0219 47 1 3.1857 -2.4290 2.7226 48 1 1.1387 -2.1095 3.9579 49 1 1.3619 -3.8844 4.0797 50 1 -0.9553 -2.9303 3.0883 51 1 -0.1655 -4.3130 2.2670 52 1 -0.3233 -1.4213 1.4245 53 1 -0.2351 -2.8912 0.4132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424123405.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:45 Heat of formation + Delta-G solvation = -94.849599 kcal Electronic energy + Delta-G solvation = -27285.327015 eV Core-core repulsion = 23768.304674 eV Total energy + Delta-G solvation = -3517.022340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55659 -40.27215 -36.82123 -36.43059 -35.33245 -34.80681 -31.93749 -31.56299 -30.05783 -28.51526 -27.74084 -27.03302 -25.69796 -24.73726 -22.34087 -21.64794 -21.11642 -20.99201 -19.75427 -18.62374 -18.05055 -17.54197 -16.95319 -16.49820 -16.34499 -16.05429 -15.91961 -15.49858 -15.18252 -14.88130 -14.75412 -14.63433 -14.26179 -14.18706 -13.79552 -13.69945 -13.41306 -13.32818 -13.02416 -12.81767 -12.77841 -12.68108 -12.52693 -12.27772 -12.02425 -11.90920 -11.77306 -11.73895 -11.65581 -11.60172 -11.36376 -11.26157 -11.23179 -11.20207 -11.00260 -10.80669 -10.48403 -10.07055 -9.62424 -8.13471 -6.23914 1.41676 1.44541 1.51221 1.53322 2.21604 2.44950 3.19440 3.51397 3.57440 3.58320 3.73442 3.88380 4.04939 4.09573 4.11975 4.14742 4.30981 4.34677 4.41898 4.48812 4.55106 4.63154 4.72446 4.77057 4.77561 4.81846 4.86670 4.92837 4.94851 4.97746 5.01228 5.04900 5.12347 5.14696 5.22371 5.24638 5.28724 5.29267 5.38397 5.45976 5.48194 5.51681 5.54683 5.56661 5.57681 5.84364 5.98631 6.09300 6.30588 6.45196 6.53505 6.94418 7.14969 7.44160 8.97583 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.003146 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.540990 B = 8898.880185 C = 9420.625441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.104 4.104 3 C -0.145 4.145 4 C -0.091 4.091 5 C -0.061 4.061 6 C 0.130 3.870 7 N -0.712 5.712 8 C 0.487 3.513 9 O -0.584 6.584 10 C 0.085 3.915 11 H 0.108 0.892 12 N -0.818 5.818 13 C -0.080 4.080 14 C 0.041 3.959 15 C -0.545 4.545 16 H 0.055 0.945 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.959 3.041 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.265 1.265 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.132 4.132 26 C -0.132 4.132 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.410 0.590 39 H 0.345 0.655 40 H 0.346 0.654 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.005 0.995 44 H -0.006 1.006 45 H 0.262 0.738 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.055 0.945 52 H 0.097 0.903 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 23.732 11.219 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.122 4.122 3 C -0.202 4.202 4 C -0.128 4.128 5 C -0.062 4.062 6 C 0.006 3.994 7 N -0.364 5.364 8 C 0.272 3.728 9 O -0.465 6.465 10 C -0.031 4.031 11 H 0.126 0.874 12 N -0.347 5.347 13 C -0.119 4.119 14 C 0.004 3.996 15 C -0.583 4.583 16 H 0.073 0.927 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.784 3.216 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.190 1.190 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.170 4.170 26 C -0.169 4.169 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.247 0.753 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.024 0.976 44 H 0.012 0.988 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.074 0.926 52 H 0.115 0.885 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.849 23.253 10.771 26.285 hybrid contribution -0.567 0.125 -0.395 0.703 sum 5.282 23.378 10.376 26.117 Atomic orbital electron populations 1.22274 0.95328 1.02017 1.01831 1.21209 0.96152 0.96572 0.98297 1.21820 1.00941 0.95450 1.01970 1.21665 1.01179 0.91825 0.98164 1.21382 0.95771 0.96241 0.92766 1.21521 1.00112 0.79543 0.98205 1.46160 1.62309 1.09139 1.18801 1.22326 0.76871 0.91480 0.82146 1.90630 1.45598 1.73768 1.36468 1.21630 0.96000 0.86947 0.98542 0.87433 1.58978 1.08934 1.61603 1.05196 1.21372 0.91518 0.98825 1.00146 1.18809 0.94524 0.90899 0.95397 1.21704 0.97157 0.92940 1.46521 0.92663 1.25891 1.02234 0.96156 0.95245 1.70099 1.37367 0.99711 1.49794 0.85603 0.79960 0.77038 0.79042 1.19635 1.20903 1.19024 1.22557 0.98564 0.99967 0.94735 1.22469 0.93799 1.02241 0.97012 1.22459 0.98647 0.99556 0.96332 1.22837 0.94690 1.01654 0.97719 0.93351 0.92112 0.91448 0.92416 0.92652 0.92996 0.91930 0.90042 0.91392 0.92520 0.92507 0.75302 0.84178 0.84062 0.91651 0.94024 0.97639 0.98774 0.92911 0.92062 0.90380 0.90458 0.91354 0.91022 0.92606 0.88523 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 7.54 71.98 0.54 -1.69 16 2 C -0.10 -1.48 2.57 -10.80 -0.03 -1.51 16 3 C -0.14 -1.77 9.16 71.98 0.66 -1.11 16 4 C -0.09 -1.14 3.77 30.59 0.12 -1.03 16 5 C -0.06 -0.94 0.47 -51.46 -0.02 -0.96 16 6 C 0.13 2.79 3.69 86.38 0.32 3.11 16 7 N -0.71 -17.44 4.55 -463.07 -2.11 -19.55 16 8 C 0.49 15.33 7.07 87.66 0.62 15.95 16 9 O -0.58 -21.82 16.25 -3.03 -0.05 -21.87 16 10 C 0.08 2.87 3.15 44.17 0.14 3.01 16 11 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 12 N -0.82 -28.38 8.44 -171.79 -1.45 -29.83 16 13 C -0.08 -3.28 4.78 30.59 0.15 -3.14 16 14 C 0.04 2.14 4.86 29.85 0.15 2.29 16 15 C -0.55 -31.16 9.11 25.60 0.23 -30.92 16 16 H 0.06 3.04 7.74 -2.91 -0.02 3.01 16 17 C 0.00 0.15 5.46 84.65 0.46 0.61 16 18 N -0.93 -56.93 13.29 21.44 0.28 -56.64 16 19 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 C -0.12 -1.72 5.59 31.70 0.18 -1.54 16 24 C -0.12 -1.53 6.91 31.91 0.22 -1.31 16 25 C -0.13 -2.04 6.79 31.67 0.21 -1.83 16 26 C -0.13 -2.10 3.73 31.32 0.12 -1.99 16 27 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 28 H 0.06 0.99 5.31 -2.38 -0.01 0.98 16 29 H 0.07 0.79 7.27 -2.39 -0.02 0.78 16 30 H 0.06 1.03 6.06 -2.38 -0.01 1.02 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.87 8.04 -2.38 -0.02 0.85 16 35 H 0.07 0.83 8.04 -2.39 -0.02 0.81 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.39 6.53 -2.39 -0.02 1.38 16 38 H 0.41 8.92 6.96 -92.71 -0.65 8.27 16 39 H 0.34 12.27 8.58 -89.70 -0.77 11.50 16 40 H 0.35 10.32 9.06 -89.69 -0.81 9.51 16 41 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 44 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 45 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 46 H 0.06 1.00 6.38 -2.39 -0.02 0.99 16 47 H 0.08 0.97 7.77 -2.39 -0.02 0.95 16 48 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.10 1.34 4.49 -2.39 -0.01 1.33 16 53 H 0.05 1.02 7.13 -2.39 -0.02 1.00 16 Total: -1.00 -67.77 399.27 1.43 -66.34 By element: Atomic # 1 Polarization: 38.34 SS G_CDS: -1.33 Total: 37.01 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 4.06 Total: -22.04 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -3.27 Total: -106.02 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.77 1.43 -66.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424123405.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.508 kcal (2) G-P(sol) polarization free energy of solvation -67.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds