Wall clock time and date at job start Fri Apr 10 2020 22:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47182 * 2 1 4 4 C 1.53005 * 109.47197 * 120.00227 * 2 1 3 5 5 C 1.53001 * 109.46709 * 175.00116 * 4 2 1 6 6 C 1.53005 * 109.46709 * 179.97438 * 5 4 2 7 7 C 1.53035 * 109.45829 * 185.00034 * 6 5 4 8 8 C 1.53191 * 109.31064 * 178.62921 * 7 6 5 9 9 N 1.46924 * 108.78009 * 54.63070 * 8 7 6 10 10 C 1.34777 * 120.62813 * 126.36522 * 9 8 7 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72946 * 10 9 8 13 13 H 1.08997 * 109.47478 * 40.27795 * 12 10 9 14 14 N 1.46905 * 109.47232 * 160.27974 * 12 10 9 15 15 C 1.53001 * 109.47277 * 280.27534 * 12 10 9 16 16 C 1.52996 * 109.47345 * 174.99661 * 15 12 10 17 17 C 1.50705 * 109.47087 * 179.97438 * 16 15 12 18 18 H 1.07992 * 120.00059 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99891 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00113 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00021 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47136 * 90.00411 * 21 19 17 23 23 H 1.48497 * 109.47348 * 210.00139 * 21 19 17 24 24 H 1.48499 * 109.47425 * 330.00632 * 21 19 17 25 25 C 1.46921 * 118.73733 * 306.64950 * 9 8 7 26 26 C 1.52760 * 109.00994 * 53.30469 * 25 9 8 27 27 H 1.08999 * 109.47352 * 299.99554 * 1 2 3 28 28 H 1.09000 * 109.47656 * 59.99686 * 1 2 3 29 29 H 1.09004 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47330 * 239.99942 * 2 1 3 31 31 H 1.09003 * 109.47035 * 59.99762 * 3 2 1 32 32 H 1.08994 * 109.47584 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47381 * 300.00245 * 3 2 1 34 34 H 1.09001 * 109.47032 * 55.00061 * 4 2 1 35 35 H 1.09004 * 109.46780 * 295.00055 * 4 2 1 36 36 H 1.09001 * 109.47418 * 60.00181 * 5 4 2 37 37 H 1.09002 * 109.46935 * 299.99470 * 5 4 2 38 38 H 1.09002 * 109.45783 * 304.96922 * 6 5 4 39 39 H 1.08994 * 109.50277 * 58.67442 * 7 6 5 40 40 H 1.08998 * 109.52797 * 298.59089 * 7 6 5 41 41 H 1.09006 * 109.58943 * 294.84276 * 8 7 6 42 42 H 1.09004 * 109.70326 * 174.49483 * 8 7 6 43 43 H 1.00900 * 110.99461 * 296.04856 * 14 12 10 44 44 H 1.00898 * 110.99843 * 59.99824 * 14 12 10 45 45 H 1.09000 * 109.47456 * 295.00621 * 15 12 10 46 46 H 1.09003 * 109.46674 * 54.99990 * 15 12 10 47 47 H 1.08994 * 109.47734 * 300.00421 * 16 15 12 48 48 H 1.09008 * 109.46545 * 60.00669 * 16 15 12 49 49 H 0.96997 * 120.00295 * 179.97438 * 20 19 17 50 50 H 1.09004 * 109.58490 * 173.13980 * 25 9 8 51 51 H 1.09002 * 109.58518 * 293.56338 * 25 9 8 52 52 H 1.09005 * 109.56000 * 185.55371 * 26 25 9 53 53 H 1.09001 * 109.36136 * 65.50440 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1879 6 6 4.0749 -1.5518 2.4374 7 6 5.6053 -1.5515 2.4371 8 6 6.1123 -2.2437 3.7062 9 7 5.5090 -3.5808 3.7889 10 6 6.2821 -4.6749 3.9361 11 8 7.4878 -4.5613 4.0019 12 6 5.6479 -6.0391 4.0255 13 1 4.8242 -6.1041 3.3147 14 7 6.6495 -7.0664 3.7097 15 6 5.1173 -6.2630 5.4429 16 6 4.3645 -7.5936 5.5015 17 6 3.8425 -7.8144 6.8979 18 1 4.0286 -7.0790 7.6665 19 6 3.1271 -8.9553 7.1941 20 7 2.6711 -9.1478 8.4125 21 14 2.8046 -10.2270 5.8645 22 1 3.9078 -11.2211 5.8521 23 1 1.5193 -10.9174 6.1411 24 1 2.7303 -9.5536 4.5430 25 6 4.0475 -3.7030 3.7018 26 6 3.5633 -2.9941 2.4383 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6054 -1.7199 1.2951 35 1 1.7516 -0.1584 2.1370 36 1 3.9994 0.1675 1.1420 37 1 3.8531 -1.3940 0.3001 38 1 3.7119 -1.0371 3.3271 39 1 5.9690 -0.5244 2.4128 40 1 5.9695 -2.0872 1.5604 41 1 5.8260 -1.6590 4.5805 42 1 7.1978 -2.3342 3.6667 43 1 6.9684 -6.9794 2.7564 44 1 7.4240 -7.0267 4.3551 45 1 5.9518 -6.2863 6.1438 46 1 4.4411 -5.4509 5.7102 47 1 3.5301 -7.5702 4.8007 48 1 5.0409 -8.4057 5.2343 49 1 2.1676 -9.9502 8.6208 50 1 3.7710 -4.7564 3.6569 51 1 3.5894 -3.2398 4.5757 52 1 2.4735 -2.9936 2.4150 53 1 3.9462 -3.5165 1.5616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424139498.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:48 Heat of formation + Delta-G solvation = -81.169601 kcal Electronic energy + Delta-G solvation = -26657.062738 eV Core-core repulsion = 23140.633607 eV Total energy + Delta-G solvation = -3516.429131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.42409 -38.48328 -36.77567 -35.41420 -33.89112 -32.76889 -31.37729 -30.48591 -29.77760 -27.52161 -27.00546 -25.56407 -23.70788 -23.38676 -22.01041 -20.60833 -20.26181 -19.96648 -18.91391 -17.31349 -16.70529 -16.05574 -15.71390 -15.62456 -15.10436 -14.84262 -14.66652 -14.34481 -14.12031 -14.08904 -13.87673 -13.58293 -13.23474 -13.10126 -12.81301 -12.58436 -12.56925 -12.35302 -12.29525 -12.08815 -11.72393 -11.62739 -11.43395 -11.34309 -11.17332 -10.95950 -10.92284 -10.86091 -10.81378 -10.48687 -10.33943 -10.22196 -9.97484 -9.69881 -9.56766 -9.10719 -8.65054 -8.49902 -8.36297 -5.98798 -3.96286 2.72704 3.03731 3.37853 3.44358 3.49575 4.27429 4.41480 4.46764 4.51759 4.57959 4.63270 4.75337 4.79854 4.87265 4.94878 5.04817 5.13275 5.21744 5.25570 5.31625 5.32819 5.36598 5.36773 5.40252 5.43929 5.50306 5.52142 5.62766 5.65171 5.70027 5.72364 5.76526 5.78858 5.82475 5.84345 5.86633 5.94478 6.06443 6.10324 6.21635 6.30546 6.46482 6.54462 6.88137 7.26379 7.38867 7.46026 7.58037 7.68163 7.87097 8.25055 8.58931 9.06084 9.64237 11.14715 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.002967 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.984629 B = 9434.848624 C =10835.216085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.088 4.088 7 C -0.126 4.126 8 C 0.108 3.892 9 N -0.609 5.609 10 C 0.486 3.514 11 O -0.556 6.556 12 C 0.074 3.926 13 H 0.098 0.902 14 N -0.811 5.811 15 C -0.088 4.088 16 C -0.004 4.004 17 C -0.520 4.520 18 H 0.069 0.931 19 C 0.065 3.935 20 N -0.906 5.906 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.264 1.264 25 C 0.101 3.899 26 C -0.131 4.131 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.334 0.666 44 H 0.349 0.651 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.012 0.988 48 H 0.029 0.971 49 H 0.262 0.738 50 H 0.095 0.905 51 H 0.073 0.927 52 H 0.080 0.920 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.492 20.506 -18.385 27.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.206 4.206 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.106 4.106 7 C -0.165 4.165 8 C -0.015 4.015 9 N -0.343 5.343 10 C 0.274 3.726 11 O -0.434 6.434 12 C -0.042 4.042 13 H 0.116 0.884 14 N -0.339 5.339 15 C -0.126 4.126 16 C -0.041 4.041 17 C -0.558 4.558 18 H 0.087 0.913 19 C -0.135 4.135 20 N -0.546 5.546 21 Si 0.710 3.290 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.189 1.189 25 C -0.022 4.022 26 C -0.169 4.169 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.146 0.854 44 H 0.164 0.836 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.030 0.970 48 H 0.047 0.953 49 H 0.071 0.929 50 H 0.114 0.886 51 H 0.091 0.909 52 H 0.098 0.902 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.528 19.889 -18.075 26.880 hybrid contribution 0.328 0.222 -0.725 0.827 sum -0.200 20.111 -18.800 27.531 Atomic orbital electron populations 1.21850 0.95345 1.01788 1.01618 1.21130 0.95623 0.96326 0.98586 1.21893 1.01132 0.96071 1.01524 1.21723 0.95462 1.00688 0.97600 1.21678 0.95512 1.00316 0.97626 1.21172 0.94902 0.95859 0.98696 1.21945 0.95628 1.00630 0.98269 1.21553 0.99615 0.83014 0.97339 1.48206 1.07203 1.06390 1.72460 1.22582 0.87545 0.87985 0.74520 1.90632 1.14772 1.86900 1.51088 1.21888 0.95628 0.84668 1.02008 0.88437 1.59060 1.18954 1.48039 1.07883 1.21483 0.99786 1.00932 0.90409 1.19479 0.94861 0.92549 0.97210 1.21174 1.33696 1.06135 0.94814 0.91322 1.25016 0.95290 0.97967 0.95257 1.69921 1.37686 1.27649 1.19321 0.86736 0.77450 0.81854 0.82961 1.20301 1.21733 1.18889 1.21812 0.79483 1.02720 0.98182 1.21974 1.01278 0.95504 0.98179 0.92714 0.92924 0.92635 0.91428 0.92762 0.92495 0.93060 0.91546 0.91942 0.91808 0.92117 0.90903 0.91010 0.91721 0.91764 0.89315 0.85407 0.83645 0.92257 0.92135 0.96972 0.95254 0.92851 0.88640 0.90917 0.90203 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 2 C -0.10 -0.62 2.92 -90.62 -0.26 -0.88 16 3 C -0.15 -0.88 8.95 37.16 0.33 -0.54 16 4 C -0.12 -0.77 4.44 -26.73 -0.12 -0.89 16 5 C -0.11 -0.77 4.44 -26.73 -0.12 -0.89 16 6 C -0.09 -0.68 2.15 -90.58 -0.19 -0.88 16 7 C -0.13 -1.09 5.36 -26.61 -0.14 -1.24 16 8 C 0.11 1.21 6.43 -3.71 -0.02 1.18 16 9 N -0.61 -7.88 2.98 -173.03 -0.52 -8.40 16 10 C 0.49 7.71 6.94 -10.98 -0.08 7.63 16 11 O -0.56 -10.28 15.66 5.55 0.09 -10.20 16 12 C 0.07 1.19 2.30 -68.86 -0.16 1.03 16 13 H 0.10 1.46 6.53 -51.93 -0.34 1.12 16 14 N -0.81 -13.05 8.44 -5.65 -0.05 -13.10 16 15 C -0.09 -1.72 4.55 -26.73 -0.12 -1.84 16 16 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 17 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 18 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.15 13.96 55.43 0.77 -27.38 16 21 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 25 C 0.10 1.11 5.55 -3.94 -0.02 1.09 16 26 C -0.13 -1.14 5.13 -26.84 -0.14 -1.28 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.33 6.57 -51.93 -0.34 -0.01 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.46 6.53 -51.93 -0.34 0.12 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.14 7.00 -51.93 -0.36 0.77 16 43 H 0.33 4.66 9.06 -39.29 -0.36 4.30 16 44 H 0.35 5.77 8.58 -39.29 -0.34 5.43 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.06 1.14 7.21 -51.93 -0.37 0.76 16 47 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 48 H 0.03 0.71 7.18 -51.92 -0.37 0.34 16 49 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 50 H 0.10 1.13 5.20 -51.93 -0.27 0.86 16 51 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.08 0.62 6.50 -51.93 -0.34 0.28 16 53 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 399.23 15.07 6.02 6.02 Total: -1.00 -32.33 399.23 -9.67 -42.01 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -10.07 Total: 5.29 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -1.24 Total: -11.59 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.21 Total: -48.87 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.33 -9.67 -42.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424139498.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.162 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds