Wall clock time and date at job start Fri Apr 10 2020 22:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47182 * 2 1 4 4 C 1.53005 * 109.47197 * 120.00227 * 2 1 3 5 5 C 1.53001 * 109.46709 * 175.00116 * 4 2 1 6 6 C 1.53005 * 109.46709 * 179.97438 * 5 4 2 7 7 C 1.53035 * 109.45829 * 185.00034 * 6 5 4 8 8 C 1.53191 * 109.31064 * 178.62921 * 7 6 5 9 9 N 1.46924 * 108.78009 * 54.63070 * 8 7 6 10 10 C 1.34777 * 120.62813 * 126.36522 * 9 8 7 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72946 * 10 9 8 13 13 H 1.08997 * 109.47478 * 40.27795 * 12 10 9 14 14 N 1.46905 * 109.47232 * 160.27974 * 12 10 9 15 15 C 1.53001 * 109.47277 * 280.27534 * 12 10 9 16 16 C 1.52996 * 109.47345 * 174.99661 * 15 12 10 17 17 C 1.50705 * 109.47087 * 179.97438 * 16 15 12 18 18 H 1.07992 * 120.00059 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99891 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00113 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00021 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47136 * 90.00411 * 21 19 17 23 23 H 1.48497 * 109.47348 * 210.00139 * 21 19 17 24 24 H 1.48499 * 109.47425 * 330.00632 * 21 19 17 25 25 C 1.46921 * 118.73733 * 306.64950 * 9 8 7 26 26 C 1.52760 * 109.00994 * 53.30469 * 25 9 8 27 27 H 1.08999 * 109.47352 * 299.99554 * 1 2 3 28 28 H 1.09000 * 109.47656 * 59.99686 * 1 2 3 29 29 H 1.09004 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47330 * 239.99942 * 2 1 3 31 31 H 1.09003 * 109.47035 * 59.99762 * 3 2 1 32 32 H 1.08994 * 109.47584 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47381 * 300.00245 * 3 2 1 34 34 H 1.09001 * 109.47032 * 55.00061 * 4 2 1 35 35 H 1.09004 * 109.46780 * 295.00055 * 4 2 1 36 36 H 1.09001 * 109.47418 * 60.00181 * 5 4 2 37 37 H 1.09002 * 109.46935 * 299.99470 * 5 4 2 38 38 H 1.09002 * 109.45783 * 304.96922 * 6 5 4 39 39 H 1.08994 * 109.50277 * 58.67442 * 7 6 5 40 40 H 1.08998 * 109.52797 * 298.59089 * 7 6 5 41 41 H 1.09006 * 109.58943 * 294.84276 * 8 7 6 42 42 H 1.09004 * 109.70326 * 174.49483 * 8 7 6 43 43 H 1.00900 * 110.99461 * 296.04856 * 14 12 10 44 44 H 1.00898 * 110.99843 * 59.99824 * 14 12 10 45 45 H 1.09000 * 109.47456 * 295.00621 * 15 12 10 46 46 H 1.09003 * 109.46674 * 54.99990 * 15 12 10 47 47 H 1.08994 * 109.47734 * 300.00421 * 16 15 12 48 48 H 1.09008 * 109.46545 * 60.00669 * 16 15 12 49 49 H 0.96997 * 120.00295 * 179.97438 * 20 19 17 50 50 H 1.09004 * 109.58490 * 173.13980 * 25 9 8 51 51 H 1.09002 * 109.58518 * 293.56338 * 25 9 8 52 52 H 1.09005 * 109.56000 * 185.55371 * 26 25 9 53 53 H 1.09001 * 109.36136 * 65.50440 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1879 6 6 4.0749 -1.5518 2.4374 7 6 5.6053 -1.5515 2.4371 8 6 6.1123 -2.2437 3.7062 9 7 5.5090 -3.5808 3.7889 10 6 6.2821 -4.6749 3.9361 11 8 7.4878 -4.5613 4.0019 12 6 5.6479 -6.0391 4.0255 13 1 4.8242 -6.1041 3.3147 14 7 6.6495 -7.0664 3.7097 15 6 5.1173 -6.2630 5.4429 16 6 4.3645 -7.5936 5.5015 17 6 3.8425 -7.8144 6.8979 18 1 4.0286 -7.0790 7.6665 19 6 3.1271 -8.9553 7.1941 20 7 2.6711 -9.1478 8.4125 21 14 2.8046 -10.2270 5.8645 22 1 3.9078 -11.2211 5.8521 23 1 1.5193 -10.9174 6.1411 24 1 2.7303 -9.5536 4.5430 25 6 4.0475 -3.7030 3.7018 26 6 3.5633 -2.9941 2.4383 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6054 -1.7199 1.2951 35 1 1.7516 -0.1584 2.1370 36 1 3.9994 0.1675 1.1420 37 1 3.8531 -1.3940 0.3001 38 1 3.7119 -1.0371 3.3271 39 1 5.9690 -0.5244 2.4128 40 1 5.9695 -2.0872 1.5604 41 1 5.8260 -1.6590 4.5805 42 1 7.1978 -2.3342 3.6667 43 1 6.9684 -6.9794 2.7564 44 1 7.4240 -7.0267 4.3551 45 1 5.9518 -6.2863 6.1438 46 1 4.4411 -5.4509 5.7102 47 1 3.5301 -7.5702 4.8007 48 1 5.0409 -8.4057 5.2343 49 1 2.1676 -9.9502 8.6208 50 1 3.7710 -4.7564 3.6569 51 1 3.5894 -3.2398 4.5757 52 1 2.4735 -2.9936 2.4150 53 1 3.9462 -3.5165 1.5616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424139498.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:47 Heat of formation + Delta-G solvation = -100.902677 kcal Electronic energy + Delta-G solvation = -26657.918428 eV Core-core repulsion = 23140.633607 eV Total energy + Delta-G solvation = -3517.284821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.52619 -39.32989 -37.46740 -36.92948 -34.84452 -34.67129 -32.30548 -32.21214 -30.49786 -28.50591 -27.97436 -26.63290 -25.00122 -24.25990 -23.00513 -21.97884 -21.14109 -20.74088 -19.97989 -18.89535 -18.39141 -17.20608 -16.98365 -16.29693 -16.21046 -15.97451 -15.63338 -15.42834 -15.28339 -15.02101 -14.74519 -14.73172 -14.46799 -14.19843 -13.94350 -13.84064 -13.60040 -13.47315 -13.12759 -12.99778 -12.81915 -12.62413 -12.49160 -12.26417 -12.18543 -12.03018 -11.87179 -11.80318 -11.69425 -11.61366 -11.48074 -11.37699 -11.26904 -11.12721 -11.03582 -10.93430 -10.70614 -9.69122 -9.67066 -8.24248 -6.27514 1.42059 1.43360 1.47477 1.56063 1.98751 2.41981 3.12326 3.41795 3.61984 3.67785 3.76331 3.88732 4.00938 4.08803 4.12024 4.16316 4.17525 4.23468 4.34680 4.40799 4.52680 4.62642 4.69112 4.71186 4.77230 4.79675 4.83809 4.85499 4.86180 4.92581 4.98430 5.05992 5.07474 5.09376 5.12037 5.15620 5.19998 5.26286 5.32171 5.41928 5.49373 5.51168 5.53561 5.62640 5.63862 5.64603 5.72738 6.03725 6.31753 6.33611 6.47668 6.80691 7.05193 7.36893 8.92648 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.002967 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.984629 B = 9434.848624 C =10835.216085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.083 4.083 7 C -0.117 4.117 8 C 0.103 3.897 9 N -0.603 5.603 10 C 0.484 3.516 11 O -0.587 6.587 12 C 0.084 3.916 13 H 0.117 0.883 14 N -0.818 5.818 15 C -0.078 4.078 16 C 0.005 3.995 17 C -0.530 4.530 18 H 0.027 0.973 19 C 0.003 3.997 20 N -0.955 5.955 21 Si 0.953 3.047 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.240 1.240 25 C 0.094 3.906 26 C -0.125 4.125 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.348 0.652 44 H 0.345 0.655 45 H 0.037 0.963 46 H 0.065 0.935 47 H 0.025 0.975 48 H 0.026 0.974 49 H 0.265 0.735 50 H 0.089 0.911 51 H 0.077 0.923 52 H 0.094 0.906 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 21.200 -20.993 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.152 4.152 5 C -0.144 4.144 6 C -0.102 4.102 7 C -0.155 4.155 8 C -0.019 4.019 9 N -0.335 5.335 10 C 0.271 3.729 11 O -0.469 6.469 12 C -0.032 4.032 13 H 0.135 0.865 14 N -0.347 5.347 15 C -0.116 4.116 16 C -0.033 4.033 17 C -0.568 4.568 18 H 0.046 0.954 19 C -0.193 4.193 20 N -0.596 5.596 21 Si 0.777 3.223 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.163 1.163 25 C -0.028 4.028 26 C -0.163 4.163 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.161 0.839 44 H 0.159 0.841 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.043 0.957 48 H 0.045 0.955 49 H 0.074 0.926 50 H 0.107 0.893 51 H 0.095 0.905 52 H 0.112 0.888 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.297 20.625 -20.710 29.257 hybrid contribution 0.557 0.096 0.184 0.595 sum -0.740 20.720 -20.526 29.175 Atomic orbital electron populations 1.21853 0.95344 1.01708 1.01737 1.21124 0.95635 0.96522 0.98365 1.21886 1.01255 0.95796 1.01607 1.21694 0.95268 1.00584 0.97681 1.21599 0.95564 1.00421 0.96798 1.21142 0.94119 0.95441 0.99475 1.21885 0.96217 1.01129 0.96306 1.21702 0.98625 0.82336 0.99245 1.48292 1.07977 1.06417 1.70816 1.22410 0.87209 0.88508 0.74741 1.90619 1.16033 1.87318 1.52882 1.21682 0.96270 0.85242 0.99996 0.86502 1.59052 1.18874 1.47970 1.08757 1.21257 0.98769 0.99139 0.92458 1.19354 0.95296 0.94436 0.94205 1.21531 1.33600 1.05248 0.96406 0.95420 1.26004 0.95078 1.00490 0.97761 1.70077 1.38966 1.28698 1.21835 0.85615 0.77361 0.78776 0.80578 1.19878 1.21244 1.16319 1.21991 0.78166 1.02852 0.99765 1.21940 1.02061 0.95677 0.96581 0.92804 0.92633 0.92815 0.91590 0.92843 0.92272 0.92857 0.91750 0.92035 0.91166 0.92281 0.90597 0.89199 0.92402 0.90871 0.91152 0.83895 0.84123 0.94377 0.91687 0.95668 0.95527 0.92647 0.89263 0.90501 0.88815 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.19 71.98 0.66 -0.93 16 2 C -0.10 -1.04 2.92 -10.79 -0.03 -1.07 16 3 C -0.15 -1.46 8.95 71.98 0.64 -0.81 16 4 C -0.11 -1.24 4.44 30.60 0.14 -1.11 16 5 C -0.11 -1.15 4.44 30.60 0.14 -1.02 16 6 C -0.08 -1.08 2.15 -10.77 -0.02 -1.11 16 7 C -0.12 -1.77 5.36 30.67 0.16 -1.61 16 8 C 0.10 2.19 6.43 86.36 0.56 2.74 16 9 N -0.60 -14.87 2.98 -819.73 -2.44 -17.31 16 10 C 0.48 14.98 6.94 87.66 0.61 15.59 16 11 O -0.59 -21.68 15.66 -3.04 -0.05 -21.73 16 12 C 0.08 2.60 2.30 44.17 0.10 2.70 16 13 H 0.12 3.20 6.53 -2.39 -0.02 3.18 16 14 N -0.82 -25.29 8.44 -171.79 -1.45 -26.74 16 15 C -0.08 -3.02 4.55 30.59 0.14 -2.88 16 16 C 0.00 0.21 3.93 29.85 0.12 0.33 16 17 C -0.53 -30.66 9.66 25.60 0.25 -30.41 16 18 H 0.03 1.77 7.99 -2.91 -0.02 1.74 16 19 C 0.00 0.17 5.47 84.66 0.46 0.63 16 20 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 21 Si 0.95 44.73 27.47 68.60 1.88 46.62 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 24 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 25 C 0.09 1.91 5.55 86.22 0.48 2.38 16 26 C -0.12 -1.86 5.13 30.53 0.16 -1.70 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.57 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.55 6.57 -2.39 -0.02 0.53 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.73 6.53 -2.39 -0.02 0.71 16 35 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.07 0.70 6.57 -2.39 -0.02 0.68 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.07 1.78 7.00 -2.38 -0.02 1.76 16 43 H 0.35 9.12 9.06 -89.69 -0.81 8.31 16 44 H 0.35 11.27 8.58 -89.70 -0.77 10.50 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.06 2.43 7.21 -2.39 -0.02 2.41 16 47 H 0.03 1.10 7.20 -2.39 -0.02 1.09 16 48 H 0.03 1.25 7.18 -2.38 -0.02 1.23 16 49 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 50 H 0.09 1.93 5.20 -2.38 -0.01 1.91 16 51 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.09 1.18 6.50 -2.38 -0.02 1.16 16 53 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -70.31 399.23 2.04 -68.28 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.76 Total: 29.35 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 4.55 Total: -18.26 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -3.59 Total: -104.25 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.62 kcal Total: -70.31 2.04 -68.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424139498.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.627 kcal (2) G-P(sol) polarization free energy of solvation -70.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds