Wall clock time and date at job start Fri Apr 10 2020 22:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46839 * 2 1 4 4 C 1.52996 * 109.47167 * 119.99789 * 2 1 3 5 5 C 1.53005 * 109.47100 * 65.00007 * 4 2 1 6 6 C 1.53005 * 109.47002 * 179.97438 * 5 4 2 7 7 C 1.53037 * 109.45949 * 185.00096 * 6 5 4 8 8 C 1.53186 * 109.31408 * 178.61562 * 7 6 5 9 9 N 1.46930 * 108.77393 * 54.63426 * 8 7 6 10 10 C 1.34775 * 120.62866 * 126.37468 * 9 8 7 11 11 O 1.21283 * 120.00078 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99898 * 180.02562 * 10 9 8 13 13 H 1.08994 * 109.47032 * 319.99329 * 12 10 9 14 14 N 1.46897 * 109.46776 * 199.99379 * 12 10 9 15 15 C 1.52999 * 109.47009 * 79.99625 * 12 10 9 16 16 C 1.53006 * 109.46623 * 184.99986 * 15 12 10 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00305 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99832 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46901 * 89.99815 * 21 19 17 23 23 H 1.48488 * 109.47487 * 210.00255 * 21 19 17 24 24 H 1.48503 * 109.47026 * 330.00635 * 21 19 17 25 25 C 1.46920 * 118.74008 * 306.63994 * 9 8 7 26 26 C 1.52768 * 109.00420 * 53.31467 * 25 9 8 27 27 H 1.09002 * 109.47037 * 299.99887 * 1 2 3 28 28 H 1.08993 * 109.47430 * 60.00070 * 1 2 3 29 29 H 1.08999 * 109.47099 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47026 * 240.00139 * 2 1 3 31 31 H 1.08993 * 109.46959 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46638 * 299.99959 * 3 2 1 33 33 H 1.08992 * 109.47198 * 60.00244 * 3 2 1 34 34 H 1.09004 * 109.47090 * 304.99921 * 4 2 1 35 35 H 1.08998 * 109.47510 * 185.00178 * 4 2 1 36 36 H 1.08995 * 109.46644 * 60.00013 * 5 4 2 37 37 H 1.08993 * 109.46953 * 299.99714 * 5 4 2 38 38 H 1.09001 * 109.45839 * 304.97610 * 6 5 4 39 39 H 1.08999 * 109.49672 * 58.66313 * 7 6 5 40 40 H 1.09007 * 109.52344 * 298.58045 * 7 6 5 41 41 H 1.09003 * 109.58923 * 294.84608 * 8 7 6 42 42 H 1.09003 * 109.70799 * 174.49225 * 8 7 6 43 43 H 1.00901 * 110.99977 * 176.04091 * 14 12 10 44 44 H 1.00896 * 111.00712 * 299.99678 * 14 12 10 45 45 H 1.09000 * 109.47486 * 65.00157 * 15 12 10 46 46 H 1.09001 * 109.47362 * 304.99435 * 15 12 10 47 47 H 1.08993 * 109.46955 * 300.00075 * 16 15 12 48 48 H 1.09000 * 109.47050 * 59.99904 * 16 15 12 49 49 H 0.97002 * 120.00008 * 179.97438 * 20 19 17 50 50 H 1.09003 * 109.58772 * 173.14108 * 25 9 8 51 51 H 1.08991 * 109.59225 * 293.57323 * 25 9 8 52 52 H 1.09004 * 109.56405 * 185.55452 * 26 25 9 53 53 H 1.08994 * 109.36189 * 65.49612 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 6 2.1458 -2.9168 2.4370 7 6 1.8505 -4.4136 2.3178 8 6 2.3937 -5.1373 3.5539 9 7 1.8331 -4.5054 4.7561 10 6 1.1946 -5.2436 5.6855 11 8 1.0779 -6.4412 5.5335 12 6 0.6245 -4.5808 6.9130 13 1 1.3175 -3.8187 7.2694 14 7 0.4213 -5.5875 7.9633 15 6 -0.7154 -3.9292 6.5650 16 6 -1.2339 -3.1513 7.7763 17 6 -2.5533 -2.5090 7.4334 18 1 -2.9792 -2.6418 6.4498 19 6 -3.2164 -1.7508 8.3749 20 7 -4.3675 -1.1898 8.0755 21 14 -2.4795 -1.5204 10.0760 22 1 -1.6109 -0.3160 10.0801 23 1 -3.5702 -1.3476 11.0687 24 1 -1.6714 -2.7146 10.4313 25 6 1.9768 -3.0528 4.9231 26 6 1.4430 -2.3534 3.6742 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6054 -0.2616 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 2.0699 -2.6549 0.3003 37 1 0.5490 -2.2723 1.1422 38 1 3.2212 -2.7650 2.5298 39 1 2.3321 -4.8094 1.4236 40 1 0.7736 -4.5682 2.2497 41 1 3.4809 -5.0606 3.5739 42 1 2.1020 -6.1871 3.5230 43 1 0.1004 -5.1583 8.8183 44 1 -0.2179 -6.3056 7.6572 45 1 -1.4353 -4.7012 6.2936 46 1 -0.5805 -3.2469 5.7257 47 1 -1.3688 -3.8336 8.6156 48 1 -0.5140 -2.3793 8.0477 49 1 -4.8342 -0.6567 8.7381 50 1 1.4079 -2.7270 5.7939 51 1 3.0291 -2.8026 5.0570 52 1 1.6346 -1.2827 3.7455 53 1 0.3700 -2.5268 3.5937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424139502.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:50 Heat of formation + Delta-G solvation = -81.319759 kcal Electronic energy + Delta-G solvation = -27049.841700 eV Core-core repulsion = 23533.406058 eV Total energy + Delta-G solvation = -3516.435642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.31042 -38.32523 -36.63051 -35.67198 -33.76505 -32.81959 -31.29519 -30.31946 -29.67289 -27.35694 -27.07907 -25.49197 -23.77532 -23.30053 -22.00523 -20.48967 -20.26472 -20.03644 -18.71278 -17.51093 -16.73493 -15.92038 -15.66420 -15.08492 -14.87340 -14.62081 -14.50641 -14.41984 -14.24158 -14.04094 -13.69943 -13.53374 -13.26642 -12.97353 -12.85318 -12.68893 -12.56117 -12.36285 -12.24393 -11.88370 -11.79433 -11.51734 -11.38005 -11.31699 -11.28331 -11.00813 -10.98188 -10.77590 -10.59795 -10.37322 -10.31347 -10.23260 -10.07883 -9.89310 -9.32784 -9.30522 -8.62981 -8.56689 -8.29558 -6.12530 -4.12028 2.88353 3.07445 3.23908 3.32739 3.33937 4.36797 4.40264 4.54344 4.57432 4.71989 4.73550 4.88180 4.90232 5.04518 5.06906 5.17435 5.20589 5.25291 5.31715 5.36011 5.43093 5.44041 5.49596 5.52370 5.53052 5.60593 5.62243 5.70451 5.71662 5.75041 5.81170 5.90822 5.91355 5.96522 5.98606 5.98809 6.09159 6.14490 6.20382 6.26060 6.32813 6.37503 6.61114 6.65068 7.09071 7.20449 7.33179 7.57483 7.66166 7.79208 8.41084 8.44081 8.91451 9.48831 11.00656 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.003898 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.032213 B = 7180.871887 C = 9407.212041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.085 4.085 7 C -0.129 4.129 8 C 0.113 3.887 9 N -0.613 5.613 10 C 0.529 3.471 11 O -0.540 6.540 12 C 0.071 3.929 13 H 0.096 0.904 14 N -0.831 5.831 15 C -0.130 4.130 16 C -0.010 4.010 17 C -0.523 4.523 18 H 0.071 0.929 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.265 1.265 25 C 0.103 3.897 26 C -0.133 4.133 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.350 0.650 44 H 0.348 0.652 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.016 0.984 48 H 0.013 0.987 49 H 0.264 0.736 50 H 0.094 0.906 51 H 0.065 0.935 52 H 0.079 0.921 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.040 0.884 -14.238 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.104 4.104 7 C -0.167 4.167 8 C -0.010 4.010 9 N -0.348 5.348 10 C 0.317 3.683 11 O -0.416 6.416 12 C -0.044 4.044 13 H 0.114 0.886 14 N -0.363 5.363 15 C -0.170 4.170 16 C -0.047 4.047 17 C -0.561 4.561 18 H 0.089 0.911 19 C -0.134 4.134 20 N -0.539 5.539 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 C -0.020 4.020 26 C -0.171 4.171 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.034 0.966 48 H 0.031 0.969 49 H 0.074 0.926 50 H 0.113 0.887 51 H 0.084 0.916 52 H 0.097 0.903 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.614 0.193 -14.298 21.920 hybrid contribution -0.789 0.736 0.802 1.344 sum 15.825 0.929 -13.495 20.819 Atomic orbital electron populations 1.21908 0.95157 1.02016 1.01750 1.21119 0.96041 0.95997 0.98385 1.21851 1.00695 0.96250 1.01770 1.21716 1.00532 0.95213 0.97968 1.21683 1.01497 0.94938 0.97136 1.21151 0.99977 0.94411 0.94863 1.21969 1.02076 0.95204 0.97469 1.21510 0.97259 0.98480 0.83754 1.48062 1.57154 1.08097 1.21508 1.20773 0.76549 0.86905 0.84053 1.90621 1.58205 1.14973 1.77797 1.21544 0.98420 0.94001 0.90476 0.88606 1.58742 1.56985 1.14641 1.05914 1.22237 0.93759 0.99829 1.01178 1.19571 0.97008 0.94915 0.93235 1.21050 1.03439 1.30675 1.00890 0.91093 1.25031 0.94655 0.95068 0.98604 1.69910 1.15244 1.33643 1.35112 0.86781 0.79038 0.79039 0.84429 1.20247 1.21336 1.18968 1.21762 1.01300 0.79444 0.99534 1.21969 1.01285 1.00048 0.93765 0.92433 0.93085 0.92365 0.91621 0.92921 0.92943 0.92566 0.91399 0.92226 0.92225 0.91507 0.91237 0.91053 0.91387 0.91985 0.89219 0.83543 0.83882 0.92095 0.91751 0.96611 0.96870 0.92638 0.88734 0.91647 0.90302 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.95 37.16 0.33 -0.95 16 2 C -0.10 -0.76 2.92 -90.62 -0.26 -1.02 16 3 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 4 C -0.12 -0.93 4.44 -26.73 -0.12 -1.05 16 5 C -0.12 -0.95 4.44 -26.73 -0.12 -1.07 16 6 C -0.09 -0.76 2.15 -90.58 -0.19 -0.95 16 7 C -0.13 -1.26 5.36 -26.62 -0.14 -1.40 16 8 C 0.11 1.31 6.44 -3.71 -0.02 1.28 16 9 N -0.61 -8.27 2.98 -173.03 -0.52 -8.78 16 10 C 0.53 8.86 6.95 -10.98 -0.08 8.78 16 11 O -0.54 -10.64 15.66 5.55 0.09 -10.55 16 12 C 0.07 1.17 2.35 -68.86 -0.16 1.00 16 13 H 0.10 1.46 6.81 -51.93 -0.35 1.11 16 14 N -0.83 -13.82 8.94 -5.66 -0.05 -13.87 16 15 C -0.13 -2.46 4.45 -26.73 -0.12 -2.58 16 16 C -0.01 -0.22 3.81 -27.88 -0.11 -0.32 16 17 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 16 18 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 21 Si 0.88 20.94 27.47 -169.99 -4.67 16.28 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 25 C 0.10 1.17 5.73 -3.93 -0.02 1.14 16 26 C -0.13 -1.38 5.13 -26.83 -0.14 -1.52 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.59 6.54 -51.93 -0.34 0.25 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.19 7.00 -51.93 -0.36 0.83 16 43 H 0.35 5.60 7.55 -39.29 -0.30 5.31 16 44 H 0.35 5.91 8.58 -39.29 -0.34 5.57 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.19 6.95 -51.93 -0.36 0.82 16 47 H 0.02 0.35 5.93 -51.93 -0.31 0.04 16 48 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.09 1.17 4.82 -51.93 -0.25 0.92 16 51 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 52 H 0.08 0.74 6.50 -51.93 -0.34 0.40 16 53 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 396.99 15.07 5.98 5.98 Total: -1.00 -31.25 396.99 -9.58 -40.83 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -9.95 Total: 8.75 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.24 Total: -12.24 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.21 Total: -49.05 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.25 -9.58 -40.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424139502.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.486 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds