Wall clock time and date at job start Fri Apr 10 2020 22:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46839 * 2 1 4 4 C 1.52996 * 109.47167 * 119.99789 * 2 1 3 5 5 C 1.53005 * 109.47100 * 65.00007 * 4 2 1 6 6 C 1.53005 * 109.47002 * 179.97438 * 5 4 2 7 7 C 1.53037 * 109.45949 * 185.00096 * 6 5 4 8 8 C 1.53186 * 109.31408 * 178.61562 * 7 6 5 9 9 N 1.46930 * 108.77393 * 54.63426 * 8 7 6 10 10 C 1.34775 * 120.62866 * 126.37468 * 9 8 7 11 11 O 1.21283 * 120.00078 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99898 * 180.02562 * 10 9 8 13 13 H 1.08994 * 109.47032 * 319.99329 * 12 10 9 14 14 N 1.46897 * 109.46776 * 199.99379 * 12 10 9 15 15 C 1.52999 * 109.47009 * 79.99625 * 12 10 9 16 16 C 1.53006 * 109.46623 * 184.99986 * 15 12 10 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00305 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99832 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46901 * 89.99815 * 21 19 17 23 23 H 1.48488 * 109.47487 * 210.00255 * 21 19 17 24 24 H 1.48503 * 109.47026 * 330.00635 * 21 19 17 25 25 C 1.46920 * 118.74008 * 306.63994 * 9 8 7 26 26 C 1.52768 * 109.00420 * 53.31467 * 25 9 8 27 27 H 1.09002 * 109.47037 * 299.99887 * 1 2 3 28 28 H 1.08993 * 109.47430 * 60.00070 * 1 2 3 29 29 H 1.08999 * 109.47099 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47026 * 240.00139 * 2 1 3 31 31 H 1.08993 * 109.46959 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46638 * 299.99959 * 3 2 1 33 33 H 1.08992 * 109.47198 * 60.00244 * 3 2 1 34 34 H 1.09004 * 109.47090 * 304.99921 * 4 2 1 35 35 H 1.08998 * 109.47510 * 185.00178 * 4 2 1 36 36 H 1.08995 * 109.46644 * 60.00013 * 5 4 2 37 37 H 1.08993 * 109.46953 * 299.99714 * 5 4 2 38 38 H 1.09001 * 109.45839 * 304.97610 * 6 5 4 39 39 H 1.08999 * 109.49672 * 58.66313 * 7 6 5 40 40 H 1.09007 * 109.52344 * 298.58045 * 7 6 5 41 41 H 1.09003 * 109.58923 * 294.84608 * 8 7 6 42 42 H 1.09003 * 109.70799 * 174.49225 * 8 7 6 43 43 H 1.00901 * 110.99977 * 176.04091 * 14 12 10 44 44 H 1.00896 * 111.00712 * 299.99678 * 14 12 10 45 45 H 1.09000 * 109.47486 * 65.00157 * 15 12 10 46 46 H 1.09001 * 109.47362 * 304.99435 * 15 12 10 47 47 H 1.08993 * 109.46955 * 300.00075 * 16 15 12 48 48 H 1.09000 * 109.47050 * 59.99904 * 16 15 12 49 49 H 0.97002 * 120.00008 * 179.97438 * 20 19 17 50 50 H 1.09003 * 109.58772 * 173.14108 * 25 9 8 51 51 H 1.08991 * 109.59225 * 293.57323 * 25 9 8 52 52 H 1.09004 * 109.56405 * 185.55452 * 26 25 9 53 53 H 1.08994 * 109.36189 * 65.49612 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 6 2.1458 -2.9168 2.4370 7 6 1.8505 -4.4136 2.3178 8 6 2.3937 -5.1373 3.5539 9 7 1.8331 -4.5054 4.7561 10 6 1.1946 -5.2436 5.6855 11 8 1.0779 -6.4412 5.5335 12 6 0.6245 -4.5808 6.9130 13 1 1.3175 -3.8187 7.2694 14 7 0.4213 -5.5875 7.9633 15 6 -0.7154 -3.9292 6.5650 16 6 -1.2339 -3.1513 7.7763 17 6 -2.5533 -2.5090 7.4334 18 1 -2.9792 -2.6418 6.4498 19 6 -3.2164 -1.7508 8.3749 20 7 -4.3675 -1.1898 8.0755 21 14 -2.4795 -1.5204 10.0760 22 1 -1.6109 -0.3160 10.0801 23 1 -3.5702 -1.3476 11.0687 24 1 -1.6714 -2.7146 10.4313 25 6 1.9768 -3.0528 4.9231 26 6 1.4430 -2.3534 3.6742 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6054 -0.2616 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 2.0699 -2.6549 0.3003 37 1 0.5490 -2.2723 1.1422 38 1 3.2212 -2.7650 2.5298 39 1 2.3321 -4.8094 1.4236 40 1 0.7736 -4.5682 2.2497 41 1 3.4809 -5.0606 3.5739 42 1 2.1020 -6.1871 3.5230 43 1 0.1004 -5.1583 8.8183 44 1 -0.2179 -6.3056 7.6572 45 1 -1.4353 -4.7012 6.2936 46 1 -0.5805 -3.2469 5.7257 47 1 -1.3688 -3.8336 8.6156 48 1 -0.5140 -2.3793 8.0477 49 1 -4.8342 -0.6567 8.7381 50 1 1.4079 -2.7270 5.7939 51 1 3.0291 -2.8026 5.0570 52 1 1.6346 -1.2827 3.7455 53 1 0.3700 -2.5268 3.5937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424139502.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:49 Heat of formation + Delta-G solvation = -100.298929 kcal Electronic energy + Delta-G solvation = -27050.664699 eV Core-core repulsion = 23533.406058 eV Total energy + Delta-G solvation = -3517.258641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46070 -39.27335 -37.47023 -37.17085 -34.86466 -34.64562 -32.20984 -32.09877 -30.49967 -28.54806 -28.00104 -26.63457 -25.13846 -24.26558 -23.00308 -22.03063 -21.26750 -20.68759 -19.86832 -19.03987 -18.50238 -17.13264 -16.43785 -16.26870 -16.17637 -15.99998 -15.64926 -15.36478 -15.24973 -15.06940 -14.96125 -14.66120 -14.56847 -14.26487 -14.11594 -13.83249 -13.56750 -13.41622 -13.11784 -13.04521 -12.99736 -12.68795 -12.55900 -12.20902 -12.17675 -12.12700 -12.02582 -11.87271 -11.74458 -11.69097 -11.49362 -11.41931 -11.28113 -11.10175 -10.98754 -10.77370 -10.66097 -9.72568 -9.59579 -8.29860 -6.35518 1.37789 1.40369 1.51241 1.57549 1.98237 2.36136 3.05718 3.45749 3.65857 3.72656 3.79655 3.90691 4.03051 4.06141 4.12950 4.14123 4.15552 4.19946 4.35226 4.46905 4.53005 4.56858 4.58101 4.68081 4.74469 4.78915 4.81205 4.82803 4.88076 4.90578 4.94360 4.97189 5.03960 5.09693 5.10964 5.15989 5.21984 5.27234 5.32197 5.34980 5.42678 5.43747 5.47935 5.58024 5.61667 5.63227 5.65564 6.03039 6.24662 6.37833 6.46490 6.72426 7.15918 7.29333 8.86928 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.003898 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.032213 B = 7180.871887 C = 9407.212041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.078 4.078 7 C -0.123 4.123 8 C 0.109 3.891 9 N -0.607 5.607 10 C 0.522 3.478 11 O -0.577 6.577 12 C 0.080 3.920 13 H 0.118 0.882 14 N -0.830 5.830 15 C -0.116 4.116 16 C -0.004 4.004 17 C -0.533 4.533 18 H 0.025 0.975 19 C 0.005 3.995 20 N -0.952 5.952 21 Si 0.952 3.048 22 H -0.263 1.263 23 H -0.290 1.290 24 H -0.239 1.239 25 C 0.098 3.902 26 C -0.130 4.130 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.354 0.646 44 H 0.344 0.656 45 H 0.037 0.963 46 H 0.063 0.937 47 H 0.024 0.976 48 H 0.031 0.969 49 H 0.266 0.734 50 H 0.084 0.916 51 H 0.095 0.905 52 H 0.092 0.908 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.341 1.494 -13.794 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.096 4.096 7 C -0.161 4.161 8 C -0.013 4.013 9 N -0.340 5.340 10 C 0.310 3.690 11 O -0.456 6.456 12 C -0.035 4.035 13 H 0.135 0.865 14 N -0.362 5.362 15 C -0.156 4.156 16 C -0.041 4.041 17 C -0.571 4.571 18 H 0.043 0.957 19 C -0.192 4.192 20 N -0.593 5.593 21 Si 0.775 3.225 22 H -0.188 1.188 23 H -0.216 1.216 24 H -0.162 1.162 25 C -0.024 4.024 26 C -0.168 4.168 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.170 0.830 44 H 0.157 0.843 45 H 0.056 0.944 46 H 0.082 0.918 47 H 0.043 0.957 48 H 0.049 0.951 49 H 0.075 0.925 50 H 0.102 0.898 51 H 0.114 0.886 52 H 0.110 0.890 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.947 0.820 -13.882 24.316 hybrid contribution -1.880 0.563 0.530 2.033 sum 18.067 1.383 -13.352 22.508 Atomic orbital electron populations 1.21919 0.96119 1.01547 1.01376 1.21117 0.95188 0.96458 0.98662 1.21843 1.01245 0.95797 1.01602 1.21684 1.01173 0.94668 0.97552 1.21628 1.00532 0.95343 0.97306 1.21117 1.00841 0.93453 0.94225 1.21932 1.00713 0.95904 0.97546 1.21684 0.98627 0.97456 0.83533 1.48163 1.55728 1.08945 1.21192 1.20802 0.76899 0.86617 0.84633 1.90603 1.59932 1.16474 1.78638 1.21463 0.97077 0.94247 0.90739 0.86465 1.58762 1.56835 1.14505 1.06062 1.22028 0.94807 0.98899 0.99906 1.19484 0.94602 0.95385 0.94648 1.21388 1.05645 1.30969 0.99104 0.95705 1.26049 0.94952 0.94629 1.03578 1.70080 1.17244 1.35024 1.36925 0.85635 0.78454 0.80344 0.78097 1.18768 1.21574 1.16220 1.21962 1.02988 0.77955 0.99519 1.21949 0.99644 1.00916 0.94316 0.93629 0.92641 0.92904 0.90923 0.92012 0.92667 0.93237 0.92372 0.90955 0.91045 0.93165 0.89210 0.88752 0.93754 0.89424 0.91281 0.83044 0.84281 0.94395 0.91842 0.95741 0.95072 0.92524 0.89762 0.88640 0.88965 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.95 71.98 0.64 -1.91 16 2 C -0.10 -1.35 2.92 -10.79 -0.03 -1.38 16 3 C -0.15 -1.94 9.19 71.98 0.66 -1.28 16 4 C -0.11 -1.58 4.44 30.59 0.14 -1.44 16 5 C -0.11 -1.64 4.44 30.60 0.14 -1.50 16 6 C -0.08 -1.21 2.15 -10.77 -0.02 -1.23 16 7 C -0.12 -2.21 5.36 30.67 0.16 -2.04 16 8 C 0.11 2.35 6.44 86.36 0.56 2.91 16 9 N -0.61 -15.55 2.98 -819.73 -2.44 -17.99 16 10 C 0.52 17.19 6.95 87.66 0.61 17.79 16 11 O -0.58 -22.86 15.66 -3.04 -0.05 -22.91 16 12 C 0.08 2.54 2.35 44.17 0.10 2.64 16 13 H 0.12 3.25 6.81 -2.39 -0.02 3.23 16 14 N -0.83 -26.52 8.94 -171.80 -1.54 -28.05 16 15 C -0.12 -4.42 4.45 30.60 0.14 -4.28 16 16 C 0.00 -0.16 3.81 29.85 0.11 -0.05 16 17 C -0.53 -29.92 9.66 25.60 0.25 -29.67 16 18 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 19 C 0.00 0.27 5.47 84.65 0.46 0.73 16 20 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 21 Si 0.95 42.34 27.47 68.60 1.88 44.22 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 23 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 25 C 0.10 2.01 5.73 86.22 0.49 2.50 16 26 C -0.13 -2.53 5.13 30.53 0.16 -2.38 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.92 6.56 -2.39 -0.02 0.91 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.93 6.54 -2.39 -0.02 0.91 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 37 H 0.05 0.92 6.56 -2.39 -0.02 0.90 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.81 7.00 -2.39 -0.02 1.79 16 43 H 0.35 10.59 7.55 -89.69 -0.68 9.91 16 44 H 0.34 11.57 8.58 -89.70 -0.77 10.80 16 45 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.06 2.39 6.95 -2.39 -0.02 2.37 16 47 H 0.02 1.03 5.93 -2.39 -0.01 1.01 16 48 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 49 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 50 H 0.08 1.92 4.82 -2.39 -0.01 1.91 16 51 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 52 H 0.09 1.56 6.50 -2.39 -0.02 1.55 16 53 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -69.74 396.99 2.10 -67.64 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -0.62 Total: 36.46 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 4.57 Total: -20.58 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -3.68 Total: -104.83 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.22 kcal Total: -69.74 2.10 -67.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424139502.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.663 kcal (2) G-P(sol) polarization free energy of solvation -69.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds