Wall clock time and date at job start Fri Apr 10 2020 22:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.54451 * 107.40770 * 2 1 4 4 C 1.52595 * 110.16256 * 116.92560 * 2 1 3 5 5 C 1.52828 * 110.39228 * 71.03072 * 4 2 1 6 6 N 1.46896 * 109.03742 * 181.28671 * 5 4 2 7 7 C 1.34777 * 119.99911 * 155.72525 * 6 5 4 8 8 O 1.21287 * 119.99681 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99885 * 179.97438 * 7 6 5 10 10 H 1.08997 * 109.47240 * 319.99633 * 9 7 6 11 11 N 1.46900 * 109.47030 * 199.99646 * 9 7 6 12 12 C 1.52996 * 109.47060 * 80.00099 * 9 7 6 13 13 C 1.52999 * 109.47055 * 184.99850 * 12 9 7 14 14 C 1.50703 * 109.47117 * 179.97438 * 13 12 9 15 15 H 1.08002 * 120.00210 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99876 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99996 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99841 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46974 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47030 * 120.00145 * 18 16 14 21 21 H 1.48499 * 109.47333 * 240.00016 * 18 16 14 22 22 C 1.52708 * 108.68019 * 62.46320 * 5 4 2 23 23 C 1.52436 * 110.91824 * 298.64236 * 22 5 4 24 24 C 1.53154 * 109.97030 * 286.80950 * 23 22 5 25 25 C 1.54515 * 107.58767 * 170.31885 * 23 22 5 26 26 C 1.51741 * 112.76583 * 51.44438 * 23 22 5 27 27 H 1.09001 * 109.46794 * 303.07517 * 1 2 3 28 28 H 1.09000 * 109.47632 * 63.07574 * 1 2 3 29 29 H 1.09008 * 109.46922 * 183.07885 * 1 2 3 30 30 H 1.09000 * 109.46937 * 178.58866 * 3 2 1 31 31 H 1.08995 * 109.46984 * 298.58697 * 3 2 1 32 32 H 1.08994 * 109.46852 * 58.58522 * 3 2 1 33 33 H 1.09214 * 109.44984 * 310.68414 * 4 2 1 34 34 H 1.09205 * 109.47755 * 191.43943 * 4 2 1 35 35 H 1.08578 * 110.59321 * 300.93144 * 5 4 2 36 36 H 0.97000 * 119.99935 * 335.71900 * 6 5 4 37 37 H 1.00895 * 111.00360 * 176.04488 * 11 9 7 38 38 H 1.00896 * 111.00091 * 300.00300 * 11 9 7 39 39 H 1.08999 * 109.47177 * 304.99697 * 12 9 7 40 40 H 1.09005 * 109.47696 * 64.99530 * 12 9 7 41 41 H 1.08996 * 109.47651 * 299.99627 * 13 12 9 42 42 H 1.09005 * 109.47162 * 59.99889 * 13 12 9 43 43 H 0.97001 * 119.99503 * 180.02562 * 17 16 14 44 44 H 1.09320 * 109.25540 * 59.34309 * 22 5 4 45 45 H 1.09323 * 109.23917 * 177.94162 * 22 5 4 46 46 H 1.09004 * 109.46826 * 185.57613 * 24 23 22 47 47 H 1.09003 * 109.47486 * 305.57476 * 24 23 22 48 48 H 1.08999 * 109.47539 * 65.57971 * 24 23 22 49 49 H 1.09006 * 109.46691 * 298.05943 * 25 23 22 50 50 H 1.09001 * 109.47323 * 58.05683 * 25 23 22 51 51 H 1.08999 * 109.46780 * 178.06266 * 25 23 22 52 52 H 1.10204 * 108.66540 * 194.15721 * 26 23 22 53 53 H 1.10234 * 108.59579 * 79.19939 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 1.9922 1.4738 0.0000 4 6 2.0561 -0.6487 1.2772 5 6 1.8025 -2.1556 1.2525 6 7 2.2915 -2.7443 2.5064 7 6 1.7763 -3.9079 2.9504 8 8 0.9087 -4.4686 2.3149 9 6 2.2783 -4.5122 4.2364 10 1 3.3594 -4.3879 4.2985 11 7 1.9474 -5.9431 4.2670 12 6 1.6151 -3.8099 5.4228 13 6 2.2157 -4.3364 6.7278 14 6 1.5628 -3.6442 7.8965 15 1 0.7965 -2.9026 7.7256 16 6 1.9439 -3.9577 9.1840 17 7 2.8773 -4.8604 9.3921 18 14 1.1351 -3.0992 10.6326 19 1 0.1237 -2.1331 10.1337 20 1 0.4715 -4.1073 11.4979 21 1 2.1668 -2.3752 11.4179 22 6 2.5729 -2.7621 0.0818 23 6 2.0947 -2.1810 -1.2439 24 6 0.7153 -2.7459 -1.5954 25 6 3.0756 -2.6518 -2.3409 26 6 2.0819 -0.6636 -1.2493 27 1 -0.3633 0.5609 0.8612 28 1 -0.3634 0.4653 -0.9162 29 1 -0.3633 -1.0263 0.0552 30 1 3.0812 1.5131 0.0253 31 1 1.6317 1.9675 -0.9023 32 1 1.5897 1.9806 0.8770 33 1 1.5512 -0.2118 2.1415 34 1 3.1288 -0.4639 1.3643 35 1 0.7408 -2.3627 1.1584 36 1 2.9851 -2.2956 3.0147 37 1 2.3294 -6.3851 5.0895 38 1 0.9500 -6.0848 4.2106 39 1 1.7864 -2.7358 5.3514 40 1 0.5433 -4.0084 5.4099 41 1 2.0444 -5.4104 6.7994 42 1 3.2874 -4.1378 6.7407 43 1 3.1451 -5.0812 10.2979 44 1 3.6391 -2.5550 0.2059 45 1 2.4274 -3.8456 0.0775 46 1 0.4248 -2.4035 -2.5887 47 1 0.7549 -3.8351 -1.5837 48 1 -0.0158 -2.4010 -0.8641 49 1 4.0723 -2.2654 -2.1273 50 1 3.1046 -3.7413 -2.3592 51 1 2.7421 -2.2808 -3.3101 52 1 1.4977 -0.3190 -2.1178 53 1 3.1112 -0.3040 -1.4117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424167341.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:53 Heat of formation + Delta-G solvation = -88.181293 kcal Electronic energy + Delta-G solvation = -27234.492081 eV Core-core repulsion = 23717.758900 eV Total energy + Delta-G solvation = -3516.733181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55293 -39.06013 -35.54805 -35.22688 -34.65261 -32.83803 -30.42566 -29.85204 -28.08609 -26.86949 -26.79448 -26.41321 -26.39856 -24.02485 -21.82386 -20.60070 -20.07574 -19.69179 -18.13736 -17.17384 -16.29826 -16.17509 -15.19883 -15.02888 -14.90390 -14.54740 -14.50583 -14.26383 -14.21076 -13.87925 -13.74893 -13.38496 -13.03742 -12.95789 -12.78843 -12.42010 -12.29061 -12.14385 -11.95845 -11.90517 -11.85634 -11.68081 -11.42366 -11.19165 -11.08374 -11.04184 -10.92444 -10.83757 -10.69171 -10.61454 -10.37025 -10.17503 -9.98101 -9.84708 -9.25335 -9.14943 -8.85351 -8.44267 -8.14794 -6.08629 -4.11568 3.01382 3.25908 3.30287 3.34024 3.38031 4.30871 4.39369 4.44060 4.48930 4.76103 4.78167 4.90848 4.98168 5.13020 5.18561 5.23547 5.26687 5.28013 5.32566 5.39848 5.41249 5.47610 5.51876 5.58791 5.61167 5.61950 5.66028 5.73028 5.78211 5.80231 5.80608 5.83334 5.93023 5.95614 5.97820 6.10433 6.17241 6.25722 6.30808 6.31557 6.35910 6.54149 6.67804 6.89167 7.47641 7.53360 7.62908 7.78809 7.88814 7.93708 8.31612 8.55832 8.94736 9.53377 11.02322 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.002877 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.717527 B = 9730.259118 C =10635.845299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.117 4.117 5 C 0.150 3.850 6 N -0.734 5.734 7 C 0.526 3.474 8 O -0.539 6.539 9 C 0.074 3.926 10 H 0.095 0.905 11 N -0.831 5.831 12 C -0.137 4.137 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.116 4.116 23 C -0.053 4.053 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.094 4.094 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.399 0.601 37 H 0.353 0.647 38 H 0.345 0.655 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.261 0.739 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.061 0.939 49 H 0.052 0.948 50 H 0.055 0.945 51 H 0.052 0.948 52 H 0.059 0.941 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 9.836 -22.657 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.053 4.053 3 C -0.203 4.203 4 C -0.154 4.154 5 C 0.046 3.954 6 N -0.386 5.386 7 C 0.313 3.687 8 O -0.414 6.414 9 C -0.041 4.041 10 H 0.113 0.887 11 N -0.363 5.363 12 C -0.176 4.176 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.155 4.155 23 C -0.054 4.054 24 C -0.202 4.202 25 C -0.202 4.202 26 C -0.131 4.131 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.233 0.767 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.071 0.929 52 H 0.078 0.922 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.166 9.280 -23.663 25.418 hybrid contribution -0.445 0.939 2.073 2.319 sum -0.280 10.219 -21.590 23.888 Atomic orbital electron populations 1.22068 0.94415 1.02353 1.01630 1.20310 0.95703 0.95009 0.94267 1.22285 1.00989 0.95249 1.01728 1.21810 1.01707 0.94170 0.97761 1.20803 0.99560 0.91821 0.83246 1.46236 1.42775 1.24567 1.25016 1.20857 0.81404 0.79960 0.86463 1.90623 1.31332 1.60986 1.58507 1.21477 1.00978 0.90083 0.91593 0.88741 1.58740 1.19679 1.10092 1.47745 1.22366 0.99890 0.99773 0.95605 1.19107 0.96121 0.96390 0.89708 1.21226 1.21295 1.22605 0.90963 0.92683 1.25017 0.95091 0.95176 0.99071 1.69961 1.29997 1.32112 1.21138 0.86536 0.79360 0.79552 0.82568 1.19754 1.20950 1.20949 1.21878 0.99624 1.00900 0.93086 1.20315 0.95841 0.94421 0.94824 1.22072 0.96223 1.00981 1.00951 1.22300 0.98653 1.01255 0.97994 1.21362 1.01218 0.93749 0.96815 0.92584 0.92690 0.91903 0.92733 0.92754 0.92531 0.91152 0.91378 0.89261 0.76691 0.83161 0.84190 0.92590 0.92757 0.96413 0.96362 0.92948 0.92021 0.91301 0.93004 0.92535 0.92032 0.92872 0.92609 0.92866 0.92189 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 7.98 37.16 0.30 -0.93 16 2 C -0.05 -0.42 0.70 -154.54 -0.11 -0.53 16 3 C -0.15 -1.03 8.09 37.92 0.31 -0.72 16 4 C -0.12 -1.07 3.96 -27.03 -0.11 -1.18 16 5 C 0.15 1.72 2.27 -67.95 -0.15 1.56 16 6 N -0.73 -9.50 5.07 -53.93 -0.27 -9.77 16 7 C 0.53 8.71 7.05 -10.99 -0.08 8.63 16 8 O -0.54 -10.46 15.90 5.55 0.09 -10.37 16 9 C 0.07 1.27 3.21 -68.87 -0.22 1.05 16 10 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 11 N -0.83 -14.53 8.94 -5.66 -0.05 -14.58 16 12 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 13 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 14 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 18 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.12 -1.25 4.07 -27.17 -0.11 -1.37 16 23 C -0.05 -0.47 0.71 -154.56 -0.11 -0.58 16 24 C -0.15 -1.36 8.01 37.24 0.30 -1.06 16 25 C -0.14 -1.17 8.06 37.95 0.31 -0.86 16 26 C -0.09 -0.73 3.47 -27.96 -0.10 -0.83 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.06 0.59 4.50 -51.92 -0.23 0.35 16 30 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.68 8.13 -51.81 -0.42 0.26 16 34 H 0.07 0.58 8.12 -51.81 -0.42 0.16 16 35 H 0.09 1.21 5.57 -52.17 -0.29 0.92 16 36 H 0.40 4.43 8.58 -40.82 -0.35 4.08 16 37 H 0.35 6.20 7.55 -39.29 -0.30 5.90 16 38 H 0.34 6.13 8.58 -39.29 -0.34 5.79 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.06 0.63 8.10 -51.75 -0.42 0.22 16 45 H 0.07 0.91 8.08 -51.75 -0.42 0.50 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 48 H 0.06 0.61 4.69 -51.93 -0.24 0.37 16 49 H 0.05 0.41 8.05 -51.93 -0.42 -0.01 16 50 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 52 H 0.06 0.44 7.96 -51.24 -0.41 0.03 16 53 H 0.06 0.44 7.60 -51.22 -0.39 0.05 16 LS Contribution 399.83 15.07 6.03 6.03 Total: -1.00 -30.55 399.83 -8.98 -39.52 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -10.03 Total: 10.59 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -0.45 Total: -12.35 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.41 Total: -49.69 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.55 -8.98 -39.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167341.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.658 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds