Wall clock time and date at job start Fri Apr 10 2020 22:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.54451 * 107.40770 * 2 1 4 4 C 1.52595 * 110.16256 * 116.92560 * 2 1 3 5 5 C 1.52828 * 110.39228 * 71.03072 * 4 2 1 6 6 N 1.46896 * 109.03742 * 181.28671 * 5 4 2 7 7 C 1.34777 * 119.99911 * 155.72525 * 6 5 4 8 8 O 1.21287 * 119.99681 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99885 * 179.97438 * 7 6 5 10 10 H 1.08997 * 109.47240 * 319.99633 * 9 7 6 11 11 N 1.46900 * 109.47030 * 199.99646 * 9 7 6 12 12 C 1.52996 * 109.47060 * 80.00099 * 9 7 6 13 13 C 1.52999 * 109.47055 * 184.99850 * 12 9 7 14 14 C 1.50703 * 109.47117 * 179.97438 * 13 12 9 15 15 H 1.08002 * 120.00210 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99876 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99996 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99841 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46974 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47030 * 120.00145 * 18 16 14 21 21 H 1.48499 * 109.47333 * 240.00016 * 18 16 14 22 22 C 1.52708 * 108.68019 * 62.46320 * 5 4 2 23 23 C 1.52436 * 110.91824 * 298.64236 * 22 5 4 24 24 C 1.53154 * 109.97030 * 286.80950 * 23 22 5 25 25 C 1.54515 * 107.58767 * 170.31885 * 23 22 5 26 26 C 1.51741 * 112.76583 * 51.44438 * 23 22 5 27 27 H 1.09001 * 109.46794 * 303.07517 * 1 2 3 28 28 H 1.09000 * 109.47632 * 63.07574 * 1 2 3 29 29 H 1.09008 * 109.46922 * 183.07885 * 1 2 3 30 30 H 1.09000 * 109.46937 * 178.58866 * 3 2 1 31 31 H 1.08995 * 109.46984 * 298.58697 * 3 2 1 32 32 H 1.08994 * 109.46852 * 58.58522 * 3 2 1 33 33 H 1.09214 * 109.44984 * 310.68414 * 4 2 1 34 34 H 1.09205 * 109.47755 * 191.43943 * 4 2 1 35 35 H 1.08578 * 110.59321 * 300.93144 * 5 4 2 36 36 H 0.97000 * 119.99935 * 335.71900 * 6 5 4 37 37 H 1.00895 * 111.00360 * 176.04488 * 11 9 7 38 38 H 1.00896 * 111.00091 * 300.00300 * 11 9 7 39 39 H 1.08999 * 109.47177 * 304.99697 * 12 9 7 40 40 H 1.09005 * 109.47696 * 64.99530 * 12 9 7 41 41 H 1.08996 * 109.47651 * 299.99627 * 13 12 9 42 42 H 1.09005 * 109.47162 * 59.99889 * 13 12 9 43 43 H 0.97001 * 119.99503 * 180.02562 * 17 16 14 44 44 H 1.09320 * 109.25540 * 59.34309 * 22 5 4 45 45 H 1.09323 * 109.23917 * 177.94162 * 22 5 4 46 46 H 1.09004 * 109.46826 * 185.57613 * 24 23 22 47 47 H 1.09003 * 109.47486 * 305.57476 * 24 23 22 48 48 H 1.08999 * 109.47539 * 65.57971 * 24 23 22 49 49 H 1.09006 * 109.46691 * 298.05943 * 25 23 22 50 50 H 1.09001 * 109.47323 * 58.05683 * 25 23 22 51 51 H 1.08999 * 109.46780 * 178.06266 * 25 23 22 52 52 H 1.10204 * 108.66540 * 194.15721 * 26 23 22 53 53 H 1.10234 * 108.59579 * 79.19939 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 1.9922 1.4738 0.0000 4 6 2.0561 -0.6487 1.2772 5 6 1.8025 -2.1556 1.2525 6 7 2.2915 -2.7443 2.5064 7 6 1.7763 -3.9079 2.9504 8 8 0.9087 -4.4686 2.3149 9 6 2.2783 -4.5122 4.2364 10 1 3.3594 -4.3879 4.2985 11 7 1.9474 -5.9431 4.2670 12 6 1.6151 -3.8099 5.4228 13 6 2.2157 -4.3364 6.7278 14 6 1.5628 -3.6442 7.8965 15 1 0.7965 -2.9026 7.7256 16 6 1.9439 -3.9577 9.1840 17 7 2.8773 -4.8604 9.3921 18 14 1.1351 -3.0992 10.6326 19 1 0.1237 -2.1331 10.1337 20 1 0.4715 -4.1073 11.4979 21 1 2.1668 -2.3752 11.4179 22 6 2.5729 -2.7621 0.0818 23 6 2.0947 -2.1810 -1.2439 24 6 0.7153 -2.7459 -1.5954 25 6 3.0756 -2.6518 -2.3409 26 6 2.0819 -0.6636 -1.2493 27 1 -0.3633 0.5609 0.8612 28 1 -0.3634 0.4653 -0.9162 29 1 -0.3633 -1.0263 0.0552 30 1 3.0812 1.5131 0.0253 31 1 1.6317 1.9675 -0.9023 32 1 1.5897 1.9806 0.8770 33 1 1.5512 -0.2118 2.1415 34 1 3.1288 -0.4639 1.3643 35 1 0.7408 -2.3627 1.1584 36 1 2.9851 -2.2956 3.0147 37 1 2.3294 -6.3851 5.0895 38 1 0.9500 -6.0848 4.2106 39 1 1.7864 -2.7358 5.3514 40 1 0.5433 -4.0084 5.4099 41 1 2.0444 -5.4104 6.7994 42 1 3.2874 -4.1378 6.7407 43 1 3.1451 -5.0812 10.2979 44 1 3.6391 -2.5550 0.2059 45 1 2.4274 -3.8456 0.0775 46 1 0.4248 -2.4035 -2.5887 47 1 0.7549 -3.8351 -1.5837 48 1 -0.0158 -2.4010 -0.8641 49 1 4.0723 -2.2654 -2.1273 50 1 3.1046 -3.7413 -2.3592 51 1 2.7421 -2.2808 -3.3101 52 1 1.4977 -0.3190 -2.1178 53 1 3.1112 -0.3040 -1.4117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424167341.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:52 Heat of formation + Delta-G solvation = -107.149317 kcal Electronic energy + Delta-G solvation = -27235.314596 eV Core-core repulsion = 23717.758900 eV Total energy + Delta-G solvation = -3517.555696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50650 -40.21104 -37.10524 -35.93269 -35.79308 -34.83505 -31.69153 -31.42676 -28.76402 -28.08412 -27.46844 -27.43449 -27.18999 -25.74767 -23.06159 -22.05102 -21.25648 -20.60002 -19.14448 -18.58772 -18.00896 -17.33382 -16.56452 -16.17148 -15.97144 -15.93683 -15.49090 -15.38693 -15.34859 -14.89386 -14.82898 -14.56487 -14.38837 -14.08126 -13.95854 -13.54172 -13.45045 -13.05858 -12.96699 -12.95761 -12.70822 -12.63960 -12.56879 -12.50995 -12.49690 -12.25213 -11.92442 -11.82039 -11.79766 -11.73952 -11.54304 -11.38085 -11.28424 -11.10432 -10.91733 -10.61673 -10.56896 -9.97772 -9.63142 -8.22085 -6.32417 1.38176 1.39761 1.51615 1.66141 2.15752 2.39619 3.11597 3.58593 3.68277 3.73369 3.77261 3.91746 4.04471 4.07262 4.13696 4.19603 4.25486 4.28882 4.40040 4.43876 4.56971 4.66682 4.72040 4.76496 4.82505 4.84362 4.86977 4.92581 4.94840 4.96971 5.06293 5.08089 5.09128 5.09907 5.12772 5.17082 5.19814 5.35413 5.42187 5.44028 5.46271 5.54176 5.56373 5.62483 5.63101 5.65588 5.80281 6.07804 6.20895 6.47259 6.59652 6.83239 7.29430 7.36787 8.88907 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.002877 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.717527 B = 9730.259118 C =10635.845299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C -0.141 4.141 4 C -0.111 4.111 5 C 0.150 3.850 6 N -0.719 5.719 7 C 0.527 3.473 8 O -0.571 6.571 9 C 0.080 3.920 10 H 0.107 0.893 11 N -0.830 5.830 12 C -0.119 4.119 13 C 0.030 3.970 14 C -0.544 4.544 15 H 0.054 0.946 16 C 0.005 3.995 17 N -0.927 5.927 18 Si 0.959 3.041 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.276 1.276 22 C -0.110 4.110 23 C -0.051 4.051 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.092 4.092 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.411 0.589 37 H 0.352 0.648 38 H 0.343 0.657 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.264 0.736 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.038 0.962 48 H 0.052 0.948 49 H 0.060 0.940 50 H 0.044 0.956 51 H 0.065 0.935 52 H 0.070 0.930 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 12.044 -23.552 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.051 4.051 3 C -0.199 4.199 4 C -0.149 4.149 5 C 0.046 3.954 6 N -0.371 5.371 7 C 0.314 3.686 8 O -0.450 6.450 9 C -0.035 4.035 10 H 0.125 0.875 11 N -0.361 5.361 12 C -0.159 4.159 13 C -0.007 4.007 14 C -0.582 4.582 15 H 0.072 0.928 16 C -0.194 4.194 17 N -0.567 5.567 18 Si 0.784 3.216 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.202 1.202 22 C -0.149 4.149 23 C -0.052 4.052 24 C -0.202 4.202 25 C -0.199 4.199 26 C -0.129 4.129 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.247 0.753 37 H 0.167 0.833 38 H 0.156 0.844 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.064 0.936 51 H 0.084 0.916 52 H 0.089 0.911 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.568 11.521 -24.572 27.145 hybrid contribution -0.564 0.227 2.331 2.409 sum 0.004 11.749 -22.241 25.153 Atomic orbital electron populations 1.22072 0.94827 1.01476 1.02113 1.20305 0.95355 0.95800 0.93673 1.22242 1.01386 0.94096 1.02129 1.21799 1.02610 0.92012 0.98490 1.20898 0.98337 0.93515 0.82628 1.46174 1.42222 1.23265 1.25437 1.20679 0.81141 0.80725 0.86093 1.90614 1.32828 1.62137 1.59390 1.21419 1.01420 0.89606 0.91065 0.87474 1.58755 1.19535 1.10325 1.47518 1.22114 0.98901 1.00383 0.94512 1.18969 0.95120 0.95325 0.91288 1.21648 1.21435 1.22804 0.92308 0.92751 1.25871 0.95642 0.95854 1.01989 1.70069 1.31269 1.33408 1.21928 0.85485 0.78556 0.78538 0.78990 1.18977 1.20585 1.20197 1.21813 1.00038 0.99024 0.93976 1.20304 0.95557 0.95394 0.93901 1.22065 0.96576 0.99902 1.01607 1.22274 0.98788 1.00663 0.98213 1.21329 1.02124 0.92433 0.97012 0.92880 0.91537 0.93375 0.92090 0.91848 0.92742 0.91559 0.90004 0.91518 0.75331 0.83343 0.84414 0.91565 0.93918 0.98014 0.97947 0.92727 0.91125 0.94323 0.91424 0.94261 0.92946 0.92107 0.93647 0.91583 0.91102 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 7.98 71.99 0.57 -1.69 16 2 C -0.05 -0.71 0.70 -52.20 -0.04 -0.74 16 3 C -0.14 -1.59 8.09 72.48 0.59 -1.01 16 4 C -0.11 -1.85 3.96 30.40 0.12 -1.73 16 5 C 0.15 3.36 2.27 44.76 0.10 3.46 16 6 N -0.72 -18.17 5.07 -442.94 -2.25 -20.42 16 7 C 0.53 17.46 7.05 87.66 0.62 18.08 16 8 O -0.57 -22.64 15.90 -3.05 -0.05 -22.69 16 9 C 0.08 2.74 3.21 44.17 0.14 2.88 16 10 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 11 N -0.83 -29.44 8.94 -171.81 -1.54 -30.98 16 12 C -0.12 -4.70 4.78 30.59 0.15 -4.55 16 13 C 0.03 1.49 4.74 29.85 0.14 1.63 16 14 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 15 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 16 C 0.00 0.27 5.46 84.66 0.46 0.73 16 17 N -0.93 -54.48 13.29 21.45 0.28 -54.19 16 18 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 C -0.11 -2.31 4.07 30.31 0.12 -2.19 16 23 C -0.05 -0.84 0.71 -52.22 -0.04 -0.88 16 24 C -0.14 -2.66 8.01 72.03 0.58 -2.09 16 25 C -0.14 -2.04 8.06 72.50 0.58 -1.46 16 26 C -0.09 -1.20 3.47 29.80 0.10 -1.09 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 29 H 0.05 0.89 4.50 -2.38 -0.01 0.87 16 30 H 0.06 0.62 8.08 -2.39 -0.02 0.61 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 1.18 8.13 -2.27 -0.02 1.16 16 34 H 0.08 1.16 8.12 -2.28 -0.02 1.14 16 35 H 0.07 1.85 5.57 -2.61 -0.01 1.83 16 36 H 0.41 8.50 8.58 -92.71 -0.80 7.71 16 37 H 0.35 12.60 7.55 -89.70 -0.68 11.92 16 38 H 0.34 12.46 8.58 -89.70 -0.77 11.69 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.00 0.08 6.87 -2.39 -0.02 0.07 16 42 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 43 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 44 H 0.07 1.35 8.10 -2.22 -0.02 1.33 16 45 H 0.04 1.05 8.08 -2.22 -0.02 1.03 16 46 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 48 H 0.05 1.06 4.69 -2.39 -0.01 1.05 16 49 H 0.06 0.79 8.05 -2.38 -0.02 0.77 16 50 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.07 0.82 7.96 -1.74 -0.01 0.80 16 53 H 0.07 0.80 7.60 -1.73 -0.01 0.79 16 Total: -1.00 -65.55 399.83 1.58 -63.97 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -1.34 Total: 39.23 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 4.44 Total: -20.42 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -3.50 Total: -105.59 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.05 Total: -22.69 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.55 1.58 -63.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167341.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.181 kcal (2) G-P(sol) polarization free energy of solvation -65.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds