Wall clock time and date at job start Fri Apr 10 2020 22:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54453 * 107.40828 * 2 1 4 4 C 1.52590 * 110.16440 * 116.91981 * 2 1 3 5 5 C 1.52829 * 110.38740 * 71.02903 * 4 2 1 6 6 N 1.46890 * 109.04463 * 181.29725 * 5 4 2 7 7 C 1.34772 * 120.00092 * 155.72184 * 6 5 4 8 8 O 1.21279 * 120.00159 * 0.02562 * 7 6 5 9 9 C 1.50707 * 119.99926 * 180.02562 * 7 6 5 10 10 H 1.08990 * 109.46905 * 40.00676 * 9 7 6 11 11 N 1.46898 * 109.47045 * 160.00562 * 9 7 6 12 12 C 1.52996 * 109.47058 * 280.00535 * 9 7 6 13 13 C 1.52998 * 109.46929 * 175.00132 * 12 9 7 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 9 15 15 H 1.08000 * 119.99302 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72505 * 14 13 12 17 17 N 1.31514 * 120.00481 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99745 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47209 * 90.00365 * 18 16 14 20 20 H 1.48506 * 109.47294 * 210.00213 * 18 16 14 21 21 H 1.48501 * 109.47275 * 330.00116 * 18 16 14 22 22 C 1.52710 * 108.67774 * 62.47585 * 5 4 2 23 23 C 1.52435 * 110.91494 * 298.63487 * 22 5 4 24 24 C 1.53151 * 109.97604 * 286.80414 * 23 22 5 25 25 C 1.54519 * 107.58541 * 170.31049 * 23 22 5 26 26 C 1.51748 * 112.76399 * 51.43980 * 23 22 5 27 27 H 1.09000 * 109.47468 * 303.07800 * 1 2 3 28 28 H 1.09005 * 109.46951 * 63.07681 * 1 2 3 29 29 H 1.08999 * 109.47280 * 183.07732 * 1 2 3 30 30 H 1.09007 * 109.46851 * 178.58571 * 3 2 1 31 31 H 1.08998 * 109.47274 * 298.58496 * 3 2 1 32 32 H 1.08993 * 109.47158 * 58.58689 * 3 2 1 33 33 H 1.09219 * 109.45482 * 310.68837 * 4 2 1 34 34 H 1.09196 * 109.48865 * 191.43612 * 4 2 1 35 35 H 1.08584 * 110.59308 * 300.94686 * 5 4 2 36 36 H 0.96998 * 119.99705 * 335.73359 * 6 5 4 37 37 H 1.00903 * 111.00091 * 296.04909 * 11 9 7 38 38 H 1.00906 * 111.00186 * 59.99876 * 11 9 7 39 39 H 1.09000 * 109.47441 * 55.00222 * 12 9 7 40 40 H 1.09002 * 109.47087 * 294.99668 * 12 9 7 41 41 H 1.09001 * 109.47671 * 60.00109 * 13 12 9 42 42 H 1.08998 * 109.47454 * 300.00107 * 13 12 9 43 43 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 44 44 H 1.09316 * 109.25570 * 59.34104 * 22 5 4 45 45 H 1.09329 * 109.23931 * 177.94099 * 22 5 4 46 46 H 1.08999 * 109.47358 * 185.57353 * 24 23 22 47 47 H 1.08996 * 109.47274 * 305.58156 * 24 23 22 48 48 H 1.09004 * 109.46822 * 65.58069 * 24 23 22 49 49 H 1.09006 * 109.47110 * 298.05668 * 25 23 22 50 50 H 1.08995 * 109.47245 * 58.06170 * 25 23 22 51 51 H 1.09002 * 109.46942 * 178.06293 * 25 23 22 52 52 H 1.10212 * 108.66396 * 194.16724 * 26 23 22 53 53 H 1.10224 * 108.59687 * 79.21780 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 1.9921 1.4738 0.0000 4 6 2.0560 -0.6485 1.2772 5 6 1.8023 -2.1554 1.2526 6 7 2.2910 -2.7442 2.5064 7 6 1.7756 -3.9077 2.9503 8 8 0.9087 -4.4688 2.3144 9 6 2.2766 -4.5115 4.2371 10 1 2.4344 -3.7219 4.9716 11 7 1.2840 -5.4656 4.7493 12 6 3.5975 -5.2391 3.9787 13 6 4.1689 -5.7449 5.3048 14 6 5.4697 -6.4622 5.0503 15 1 5.8504 -6.5489 4.0433 16 6 6.1762 -7.0031 6.1034 17 7 7.3116 -7.6286 5.8814 18 14 5.5215 -6.8463 7.8459 19 1 4.6528 -8.0104 8.1549 20 1 6.6585 -6.8100 8.8005 21 1 4.7328 -5.5940 7.9676 22 6 2.5730 -2.7620 0.0820 23 6 2.0949 -2.1810 -1.2437 24 6 0.7156 -2.7460 -1.5955 25 6 3.0761 -2.6517 -2.3406 26 6 2.0819 -0.6636 -1.2492 27 1 -0.3634 0.5609 0.8611 28 1 -0.3633 0.4653 -0.9163 29 1 -0.3634 -1.0262 0.0552 30 1 3.0811 1.5131 0.0254 31 1 1.6316 1.9676 -0.9024 32 1 1.5897 1.9807 0.8770 33 1 1.5511 -0.2116 2.1415 34 1 3.1287 -0.4639 1.3644 35 1 0.7406 -2.3625 1.1583 36 1 2.9845 -2.2955 3.0150 37 1 0.4226 -4.9978 4.9886 38 1 1.1201 -6.2080 4.0858 39 1 4.3062 -4.5523 3.5161 40 1 3.4226 -6.0840 3.3126 41 1 3.4603 -6.4318 5.7675 42 1 4.3438 -4.9001 5.9709 43 1 7.8088 -8.0088 6.6224 44 1 3.6391 -2.5550 0.2063 45 1 2.4274 -3.8455 0.0777 46 1 0.4252 -2.4037 -2.5888 47 1 0.7553 -3.8352 -1.5838 48 1 -0.0156 -2.4012 -0.8643 49 1 4.0727 -2.2651 -2.1269 50 1 3.1053 -3.7411 -2.3589 51 1 2.7427 -2.2808 -3.3098 52 1 1.4975 -0.3190 -2.1178 53 1 3.1110 -0.3038 -1.4118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424167342.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:55 Heat of formation + Delta-G solvation = -84.286266 kcal Electronic energy + Delta-G solvation = -27347.514895 eV Core-core repulsion = 23830.950615 eV Total energy + Delta-G solvation = -3516.564280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65717 -39.26175 -35.44953 -35.27307 -34.80147 -32.74236 -30.57417 -30.39310 -28.14545 -26.91322 -26.83312 -26.66907 -26.45870 -23.83413 -21.71350 -20.51381 -20.11613 -19.71936 -18.23757 -17.08869 -16.63143 -16.37961 -15.57375 -15.17006 -15.14283 -14.79931 -14.51654 -14.22862 -14.10635 -13.92922 -13.76434 -13.43542 -13.39613 -12.88702 -12.59799 -12.48157 -12.34249 -12.31940 -12.02895 -11.94668 -11.88479 -11.70679 -11.50446 -11.25603 -11.10852 -10.99816 -10.90652 -10.86819 -10.68683 -10.42474 -10.26923 -10.21680 -9.98478 -9.69435 -9.55995 -9.09891 -8.98675 -8.49273 -8.35070 -5.98406 -3.95893 2.77163 3.23124 3.38362 3.44714 3.50226 4.25458 4.37774 4.43053 4.52272 4.71541 4.73063 4.81430 4.86015 4.93225 5.07801 5.10726 5.19609 5.25509 5.33565 5.35655 5.36479 5.42931 5.43882 5.49751 5.52760 5.58713 5.59173 5.65823 5.71130 5.73443 5.77293 5.79175 5.88111 5.90710 5.93668 6.04108 6.10888 6.20698 6.27416 6.30450 6.32163 6.49500 6.55426 6.89963 7.28903 7.40309 7.55990 7.62438 7.69235 7.87835 8.32887 8.59354 9.06427 9.64723 11.15151 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.002932 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.823058 B = 9546.975199 C = 9764.975815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.116 4.116 5 C 0.147 3.853 6 N -0.729 5.729 7 C 0.485 3.515 8 O -0.552 6.552 9 C 0.074 3.926 10 H 0.096 0.904 11 N -0.811 5.811 12 C -0.086 4.086 13 C -0.004 4.004 14 C -0.521 4.521 15 H 0.069 0.931 16 C 0.065 3.935 17 N -0.907 5.907 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.264 1.264 22 C -0.117 4.117 23 C -0.053 4.053 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.095 4.095 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.401 0.599 37 H 0.334 0.666 38 H 0.349 0.651 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.029 0.971 42 H 0.012 0.988 43 H 0.262 0.738 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.054 0.946 50 H 0.056 0.944 51 H 0.052 0.948 52 H 0.060 0.940 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.619 18.910 -14.119 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.053 4.053 3 C -0.203 4.203 4 C -0.154 4.154 5 C 0.043 3.957 6 N -0.381 5.381 7 C 0.270 3.730 8 O -0.430 6.430 9 C -0.042 4.042 10 H 0.114 0.886 11 N -0.339 5.339 12 C -0.124 4.124 13 C -0.042 4.042 14 C -0.559 4.559 15 H 0.087 0.913 16 C -0.135 4.135 17 N -0.546 5.546 18 Si 0.710 3.290 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.189 1.189 22 C -0.156 4.156 23 C -0.054 4.054 24 C -0.202 4.202 25 C -0.203 4.203 26 C -0.132 4.132 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.235 0.765 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.031 0.969 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.071 0.929 52 H 0.078 0.922 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.565 18.262 -13.891 26.655 hybrid contribution -0.330 0.538 0.251 0.679 sum -13.895 18.799 -13.641 27.066 Atomic orbital electron populations 1.22060 0.94488 1.02237 1.01593 1.20305 0.95614 0.95046 0.94316 1.22288 1.01108 0.95183 1.01681 1.21802 1.01825 0.94084 0.97651 1.20854 0.99432 0.91917 0.83537 1.46394 1.42206 1.24480 1.24977 1.22564 0.81450 0.80224 0.88727 1.90643 1.32156 1.61126 1.59063 1.21854 0.95712 0.95675 0.90944 0.88578 1.59034 1.13970 1.13327 1.47616 1.21447 0.90946 0.98782 1.01265 1.19483 0.96146 0.96367 0.92177 1.21188 1.04373 1.34753 0.95555 0.91334 1.25017 0.94666 0.94685 0.99178 1.69924 1.15090 1.37736 1.31891 0.86729 0.78353 0.79325 0.84551 1.20286 1.21738 1.18896 1.21880 0.99858 1.00887 0.92978 1.20312 0.95823 0.94354 0.94892 1.22067 0.96192 1.00999 1.00909 1.22306 0.98712 1.01399 0.97885 1.21367 1.01345 0.93793 0.96728 0.92727 0.92631 0.91978 0.92633 0.92697 0.92636 0.91420 0.91230 0.89364 0.76511 0.85397 0.83655 0.92244 0.92315 0.95266 0.96941 0.92854 0.91737 0.91323 0.92958 0.92548 0.92200 0.92726 0.92513 0.92851 0.92154 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 7.98 37.16 0.30 -0.78 16 2 C -0.05 -0.38 0.70 -154.55 -0.11 -0.49 16 3 C -0.15 -0.93 8.09 37.92 0.31 -0.63 16 4 C -0.12 -0.96 3.96 -27.03 -0.11 -1.07 16 5 C 0.15 1.57 2.27 -67.95 -0.15 1.42 16 6 N -0.73 -8.65 5.07 -53.93 -0.27 -8.93 16 7 C 0.48 7.23 7.04 -10.98 -0.08 7.16 16 8 O -0.55 -9.71 15.90 5.56 0.09 -9.62 16 9 C 0.07 1.16 3.15 -68.86 -0.22 0.95 16 10 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 11 N -0.81 -12.79 8.44 -5.66 -0.05 -12.84 16 12 C -0.09 -1.66 4.78 -26.73 -0.13 -1.79 16 13 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 14 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 15 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.31 13.96 55.43 0.77 -27.53 16 18 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 22 C -0.12 -1.29 4.07 -27.17 -0.11 -1.40 16 23 C -0.05 -0.48 0.71 -154.56 -0.11 -0.59 16 24 C -0.14 -1.34 8.01 37.24 0.30 -1.04 16 25 C -0.15 -1.27 8.06 37.95 0.31 -0.96 16 26 C -0.09 -0.73 3.47 -27.96 -0.10 -0.83 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.06 0.52 4.50 -51.93 -0.23 0.28 16 30 H 0.05 0.35 8.08 -51.93 -0.42 -0.06 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.55 8.13 -51.81 -0.42 0.13 16 34 H 0.07 0.56 8.12 -51.82 -0.42 0.14 16 35 H 0.09 1.10 5.57 -52.16 -0.29 0.81 16 36 H 0.40 4.05 8.58 -40.82 -0.35 3.70 16 37 H 0.33 4.54 9.06 -39.29 -0.36 4.19 16 38 H 0.35 5.67 8.58 -39.29 -0.34 5.33 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 42 H 0.01 0.29 7.18 -51.93 -0.37 -0.08 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.06 0.71 8.10 -51.75 -0.42 0.30 16 45 H 0.07 0.94 8.08 -51.74 -0.42 0.52 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 48 H 0.06 0.57 4.69 -51.93 -0.24 0.32 16 49 H 0.05 0.46 8.05 -51.93 -0.42 0.05 16 50 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.06 0.43 7.96 -51.24 -0.41 0.03 16 53 H 0.06 0.46 7.60 -51.23 -0.39 0.07 16 LS Contribution 398.18 15.07 6.00 6.00 Total: -1.00 -32.30 398.18 -8.67 -40.98 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -10.10 Total: 8.18 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.44 Total: -13.70 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.45 Total: -49.30 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.30 -8.67 -40.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167342.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.309 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds