Wall clock time and date at job start Fri Apr 10 2020 22:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54453 * 107.40828 * 2 1 4 4 C 1.52590 * 110.16440 * 116.91981 * 2 1 3 5 5 C 1.52829 * 110.38740 * 71.02903 * 4 2 1 6 6 N 1.46890 * 109.04463 * 181.29725 * 5 4 2 7 7 C 1.34772 * 120.00092 * 155.72184 * 6 5 4 8 8 O 1.21279 * 120.00159 * 0.02562 * 7 6 5 9 9 C 1.50707 * 119.99926 * 180.02562 * 7 6 5 10 10 H 1.08990 * 109.46905 * 40.00676 * 9 7 6 11 11 N 1.46898 * 109.47045 * 160.00562 * 9 7 6 12 12 C 1.52996 * 109.47058 * 280.00535 * 9 7 6 13 13 C 1.52998 * 109.46929 * 175.00132 * 12 9 7 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 9 15 15 H 1.08000 * 119.99302 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72505 * 14 13 12 17 17 N 1.31514 * 120.00481 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99745 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47209 * 90.00365 * 18 16 14 20 20 H 1.48506 * 109.47294 * 210.00213 * 18 16 14 21 21 H 1.48501 * 109.47275 * 330.00116 * 18 16 14 22 22 C 1.52710 * 108.67774 * 62.47585 * 5 4 2 23 23 C 1.52435 * 110.91494 * 298.63487 * 22 5 4 24 24 C 1.53151 * 109.97604 * 286.80414 * 23 22 5 25 25 C 1.54519 * 107.58541 * 170.31049 * 23 22 5 26 26 C 1.51748 * 112.76399 * 51.43980 * 23 22 5 27 27 H 1.09000 * 109.47468 * 303.07800 * 1 2 3 28 28 H 1.09005 * 109.46951 * 63.07681 * 1 2 3 29 29 H 1.08999 * 109.47280 * 183.07732 * 1 2 3 30 30 H 1.09007 * 109.46851 * 178.58571 * 3 2 1 31 31 H 1.08998 * 109.47274 * 298.58496 * 3 2 1 32 32 H 1.08993 * 109.47158 * 58.58689 * 3 2 1 33 33 H 1.09219 * 109.45482 * 310.68837 * 4 2 1 34 34 H 1.09196 * 109.48865 * 191.43612 * 4 2 1 35 35 H 1.08584 * 110.59308 * 300.94686 * 5 4 2 36 36 H 0.96998 * 119.99705 * 335.73359 * 6 5 4 37 37 H 1.00903 * 111.00091 * 296.04909 * 11 9 7 38 38 H 1.00906 * 111.00186 * 59.99876 * 11 9 7 39 39 H 1.09000 * 109.47441 * 55.00222 * 12 9 7 40 40 H 1.09002 * 109.47087 * 294.99668 * 12 9 7 41 41 H 1.09001 * 109.47671 * 60.00109 * 13 12 9 42 42 H 1.08998 * 109.47454 * 300.00107 * 13 12 9 43 43 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 44 44 H 1.09316 * 109.25570 * 59.34104 * 22 5 4 45 45 H 1.09329 * 109.23931 * 177.94099 * 22 5 4 46 46 H 1.08999 * 109.47358 * 185.57353 * 24 23 22 47 47 H 1.08996 * 109.47274 * 305.58156 * 24 23 22 48 48 H 1.09004 * 109.46822 * 65.58069 * 24 23 22 49 49 H 1.09006 * 109.47110 * 298.05668 * 25 23 22 50 50 H 1.08995 * 109.47245 * 58.06170 * 25 23 22 51 51 H 1.09002 * 109.46942 * 178.06293 * 25 23 22 52 52 H 1.10212 * 108.66396 * 194.16724 * 26 23 22 53 53 H 1.10224 * 108.59687 * 79.21780 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 1.9921 1.4738 0.0000 4 6 2.0560 -0.6485 1.2772 5 6 1.8023 -2.1554 1.2526 6 7 2.2910 -2.7442 2.5064 7 6 1.7756 -3.9077 2.9503 8 8 0.9087 -4.4688 2.3144 9 6 2.2766 -4.5115 4.2371 10 1 2.4344 -3.7219 4.9716 11 7 1.2840 -5.4656 4.7493 12 6 3.5975 -5.2391 3.9787 13 6 4.1689 -5.7449 5.3048 14 6 5.4697 -6.4622 5.0503 15 1 5.8504 -6.5489 4.0433 16 6 6.1762 -7.0031 6.1034 17 7 7.3116 -7.6286 5.8814 18 14 5.5215 -6.8463 7.8459 19 1 4.6528 -8.0104 8.1549 20 1 6.6585 -6.8100 8.8005 21 1 4.7328 -5.5940 7.9676 22 6 2.5730 -2.7620 0.0820 23 6 2.0949 -2.1810 -1.2437 24 6 0.7156 -2.7460 -1.5955 25 6 3.0761 -2.6517 -2.3406 26 6 2.0819 -0.6636 -1.2492 27 1 -0.3634 0.5609 0.8611 28 1 -0.3633 0.4653 -0.9163 29 1 -0.3634 -1.0262 0.0552 30 1 3.0811 1.5131 0.0254 31 1 1.6316 1.9676 -0.9024 32 1 1.5897 1.9807 0.8770 33 1 1.5511 -0.2116 2.1415 34 1 3.1287 -0.4639 1.3644 35 1 0.7406 -2.3625 1.1583 36 1 2.9845 -2.2955 3.0150 37 1 0.4226 -4.9978 4.9886 38 1 1.1201 -6.2080 4.0858 39 1 4.3062 -4.5523 3.5161 40 1 3.4226 -6.0840 3.3126 41 1 3.4603 -6.4318 5.7675 42 1 4.3438 -4.9001 5.9709 43 1 7.8088 -8.0088 6.6224 44 1 3.6391 -2.5550 0.2063 45 1 2.4274 -3.8455 0.0777 46 1 0.4252 -2.4037 -2.5888 47 1 0.7553 -3.8352 -1.5838 48 1 -0.0156 -2.4012 -0.8643 49 1 4.0727 -2.2651 -2.1269 50 1 3.1053 -3.7411 -2.3589 51 1 2.7427 -2.2808 -3.3098 52 1 1.4975 -0.3190 -2.1178 53 1 3.1110 -0.3038 -1.4118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424167342.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:54 Heat of formation + Delta-G solvation = -105.852033 kcal Electronic energy + Delta-G solvation = -27348.450057 eV Core-core repulsion = 23830.950615 eV Total energy + Delta-G solvation = -3517.499442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.57196 -40.29584 -36.88919 -35.97853 -35.85741 -34.78000 -32.28325 -31.44469 -28.79035 -28.33174 -27.51229 -27.45853 -27.22358 -25.40068 -22.85608 -21.97978 -21.30176 -20.60998 -19.18093 -18.80611 -17.99699 -17.49924 -16.83127 -16.30154 -16.07290 -15.98565 -15.48991 -15.38409 -15.17207 -15.02692 -14.79368 -14.67794 -14.52816 -14.11083 -13.95013 -13.58725 -13.53486 -13.10064 -12.98261 -12.82638 -12.67963 -12.62152 -12.54031 -12.51406 -12.29493 -12.00416 -11.90751 -11.82965 -11.79557 -11.61682 -11.57193 -11.43941 -11.26945 -11.14144 -11.02704 -10.93161 -10.71289 -10.01520 -9.63379 -8.25211 -6.28600 1.41500 1.42780 1.54953 1.55850 2.20048 2.41355 3.11432 3.53401 3.58632 3.67034 3.72923 3.91260 4.01011 4.04172 4.09651 4.16488 4.24951 4.27875 4.36853 4.40342 4.54037 4.67923 4.70847 4.72415 4.78895 4.83500 4.85064 4.89071 4.92176 4.93935 5.03457 5.05252 5.06523 5.10068 5.13807 5.14124 5.17177 5.31349 5.39650 5.40831 5.49864 5.50837 5.53566 5.58837 5.60367 5.65491 5.72699 6.07690 6.32335 6.47420 6.56723 6.80044 7.20486 7.36005 8.91813 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.002932 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.823058 B = 9546.975199 C = 9764.975815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C -0.141 4.141 4 C -0.110 4.110 5 C 0.149 3.851 6 N -0.717 5.717 7 C 0.487 3.513 8 O -0.582 6.582 9 C 0.084 3.916 10 H 0.120 0.880 11 N -0.819 5.819 12 C -0.077 4.077 13 C 0.003 3.997 14 C -0.532 4.532 15 H 0.027 0.973 16 C 0.002 3.998 17 N -0.956 5.956 18 Si 0.955 3.045 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.241 1.241 22 C -0.113 4.113 23 C -0.050 4.050 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.093 4.093 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.412 0.588 37 H 0.348 0.652 38 H 0.345 0.655 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.027 0.973 42 H 0.025 0.975 43 H 0.265 0.735 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.067 0.933 47 H 0.036 0.964 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.041 0.959 51 H 0.067 0.933 52 H 0.071 0.929 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.838 21.715 -13.397 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.148 4.148 5 C 0.045 3.955 6 N -0.368 5.368 7 C 0.272 3.728 8 O -0.462 6.462 9 C -0.032 4.032 10 H 0.137 0.863 11 N -0.348 5.348 12 C -0.116 4.116 13 C -0.034 4.034 14 C -0.570 4.570 15 H 0.045 0.955 16 C -0.194 4.194 17 N -0.597 5.597 18 Si 0.778 3.222 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.164 1.164 22 C -0.152 4.152 23 C -0.051 4.051 24 C -0.200 4.200 25 C -0.202 4.202 26 C -0.130 4.130 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.248 0.752 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.055 0.945 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.060 0.940 51 H 0.086 0.914 52 H 0.090 0.910 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.786 21.113 -13.180 28.950 hybrid contribution 0.094 -0.378 -0.083 0.398 sum -14.691 20.736 -13.262 28.665 Atomic orbital electron populations 1.22052 0.94425 1.01521 1.02289 1.20300 0.95623 0.95746 0.93502 1.22243 1.01246 0.94080 1.02283 1.21787 1.02491 0.91813 0.98660 1.20908 0.98321 0.93653 0.82634 1.46338 1.41692 1.23499 1.25241 1.22346 0.81300 0.80847 0.88281 1.90638 1.33691 1.62158 1.59697 1.21668 0.93771 0.95744 0.92031 0.86266 1.59024 1.14808 1.13482 1.47441 1.21232 0.93133 0.98528 0.98676 1.19365 0.93537 0.96083 0.94438 1.21571 1.06425 1.35151 0.93842 0.95478 1.26023 0.94809 0.94258 1.04319 1.70082 1.16840 1.39222 1.33541 0.85591 0.77982 0.80343 0.78260 1.19779 1.21247 1.16373 1.21830 0.99926 0.98834 0.94565 1.20297 0.95541 0.95562 0.93667 1.22049 0.96419 0.99747 1.01760 1.22300 0.98868 1.00521 0.98529 1.21339 1.02013 0.92240 0.97419 0.92353 0.91695 0.93339 0.92436 0.91957 0.92254 0.90688 0.90470 0.90968 0.75180 0.83834 0.84191 0.91724 0.94475 0.95508 0.95708 0.92636 0.91826 0.94816 0.91386 0.94515 0.92479 0.92449 0.93967 0.91408 0.91038 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 7.98 71.98 0.57 -1.27 16 2 C -0.05 -0.63 0.70 -52.21 -0.04 -0.67 16 3 C -0.14 -1.39 8.09 72.48 0.59 -0.80 16 4 C -0.11 -1.59 3.96 30.40 0.12 -1.47 16 5 C 0.15 3.08 2.27 44.76 0.10 3.18 16 6 N -0.72 -16.23 5.07 -442.94 -2.24 -18.47 16 7 C 0.49 14.22 7.04 87.66 0.62 14.83 16 8 O -0.58 -20.61 15.90 -3.03 -0.05 -20.65 16 9 C 0.08 2.51 3.15 44.17 0.14 2.65 16 10 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 11 N -0.82 -24.73 8.44 -171.81 -1.45 -26.18 16 12 C -0.08 -2.97 4.78 30.59 0.15 -2.82 16 13 C 0.00 0.15 3.93 29.85 0.12 0.27 16 14 C -0.53 -31.04 9.66 25.60 0.25 -30.79 16 15 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 16 C 0.00 0.12 5.47 84.65 0.46 0.58 16 17 N -0.96 -60.99 13.96 21.45 0.30 -60.69 16 18 Si 0.95 45.06 27.47 68.60 1.88 46.94 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.24 -10.35 6.53 99.48 0.65 -9.70 16 22 C -0.11 -2.50 4.07 30.31 0.12 -2.38 16 23 C -0.05 -0.87 0.71 -52.21 -0.04 -0.91 16 24 C -0.14 -2.62 8.01 72.03 0.58 -2.04 16 25 C -0.14 -2.43 8.06 72.50 0.58 -1.84 16 26 C -0.09 -1.23 3.47 29.80 0.10 -1.12 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.70 8.09 -2.38 -0.02 0.68 16 29 H 0.05 0.75 4.50 -2.39 -0.01 0.74 16 30 H 0.06 0.56 8.08 -2.38 -0.02 0.54 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 1.01 8.13 -2.27 -0.02 0.99 16 34 H 0.08 1.03 8.12 -2.28 -0.02 1.01 16 35 H 0.07 1.78 5.57 -2.61 -0.01 1.77 16 36 H 0.41 7.49 8.58 -92.71 -0.80 6.70 16 37 H 0.35 8.85 9.06 -89.69 -0.81 8.04 16 38 H 0.34 11.08 8.58 -89.69 -0.77 10.31 16 39 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 41 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 42 H 0.02 1.09 7.18 -2.39 -0.02 1.08 16 43 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.06 1.39 8.10 -2.22 -0.02 1.38 16 45 H 0.03 0.97 8.08 -2.21 -0.02 0.95 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.04 0.80 8.09 -2.39 -0.02 0.78 16 48 H 0.06 1.08 4.69 -2.39 -0.01 1.07 16 49 H 0.06 0.92 8.05 -2.38 -0.02 0.90 16 50 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 51 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.07 0.83 7.96 -1.74 -0.01 0.81 16 53 H 0.07 0.82 7.60 -1.73 -0.01 0.81 16 Total: -1.00 -71.22 398.18 1.34 -69.89 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -1.53 Total: 33.78 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 4.43 Total: -24.62 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -3.40 Total: -105.34 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.05 Total: -20.65 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -71.22 1.34 -69.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167342.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.967 kcal (2) G-P(sol) polarization free energy of solvation -71.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds