Wall clock time and date at job start Fri Apr 10 2020 22:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46878 * 2 1 4 4 C 1.52998 * 109.47335 * 301.91552 * 3 2 1 5 5 C 1.52994 * 109.47121 * 184.83922 * 4 3 2 6 6 C 1.53003 * 109.46999 * 181.91420 * 3 2 1 7 7 C 1.52998 * 109.47185 * 300.00224 * 6 3 2 8 8 C 1.52997 * 109.47034 * 299.99934 * 7 6 3 9 9 N 1.46506 * 109.47088 * 179.97438 * 8 7 6 10 10 C 1.34774 * 119.99900 * 85.00082 * 9 8 7 11 11 O 1.21280 * 120.00103 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00007 * 180.02562 * 10 9 8 13 13 H 1.08991 * 109.47478 * 39.99678 * 12 10 9 14 14 N 1.46900 * 109.47119 * 160.00045 * 12 10 9 15 15 C 1.53008 * 109.46834 * 279.99617 * 12 10 9 16 16 C 1.52995 * 109.46771 * 174.99831 * 15 12 10 17 17 C 1.50707 * 109.47162 * 180.02562 * 16 15 12 18 18 H 1.08000 * 119.99680 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99883 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00340 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99458 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47457 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46871 * 120.00165 * 21 19 17 24 24 H 1.48503 * 109.47281 * 240.00047 * 21 19 17 25 25 C 1.53001 * 109.47439 * 60.00402 * 8 7 6 26 26 C 1.52998 * 109.46679 * 299.99815 * 25 8 7 27 27 H 1.08998 * 109.46713 * 298.65486 * 1 2 3 28 28 H 1.08999 * 109.47046 * 58.65824 * 1 2 3 29 29 H 1.08998 * 109.46575 * 178.65875 * 1 2 3 30 30 H 1.09002 * 109.47110 * 120.00059 * 2 1 3 31 31 H 1.09000 * 109.47206 * 240.00391 * 2 1 3 32 32 H 1.09001 * 109.47219 * 304.84567 * 4 3 2 33 33 H 1.09001 * 109.46790 * 64.84039 * 4 3 2 34 34 H 1.08996 * 109.47200 * 185.67049 * 5 4 3 35 35 H 1.08995 * 109.47418 * 305.67777 * 5 4 3 36 36 H 1.09009 * 109.46955 * 65.67515 * 5 4 3 37 37 H 1.08996 * 109.47242 * 59.99989 * 6 3 2 38 38 H 1.08997 * 109.46814 * 180.02562 * 6 3 2 39 39 H 1.09003 * 109.47411 * 180.02562 * 7 6 3 40 40 H 1.09005 * 109.47199 * 59.99920 * 7 6 3 41 41 H 1.08994 * 109.47771 * 299.99761 * 8 7 6 42 42 H 0.97003 * 120.00374 * 264.99992 * 9 8 7 43 43 H 1.00897 * 111.00112 * 296.04387 * 14 12 10 44 44 H 1.00900 * 110.99927 * 59.99906 * 14 12 10 45 45 H 1.08997 * 109.47447 * 295.00334 * 15 12 10 46 46 H 1.09002 * 109.46904 * 55.00216 * 15 12 10 47 47 H 1.08997 * 109.47546 * 300.00442 * 16 15 12 48 48 H 1.09002 * 109.47092 * 60.00500 * 16 15 12 49 49 H 0.97006 * 120.00089 * 180.02562 * 20 19 17 50 50 H 1.08996 * 109.47601 * 180.02562 * 25 8 7 51 51 H 1.09005 * 109.47264 * 59.99726 * 25 8 7 52 52 H 1.08997 * 109.47353 * 299.99673 * 26 25 8 53 53 H 1.09003 * 109.47411 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4910 2.1776 -1.2244 5 6 2.0959 3.5814 -1.2901 6 6 3.5693 1.4429 -0.0482 7 6 4.1183 0.7078 1.1762 8 6 3.6480 1.4150 2.4488 9 7 4.1732 0.7108 3.6213 10 6 5.4101 0.9908 4.0775 11 8 6.0882 1.8261 3.5177 12 6 5.9505 0.2661 5.2832 13 1 5.6606 -0.7835 5.2364 14 7 7.4158 0.3690 5.3003 15 6 5.3801 0.8966 6.5553 16 6 5.8287 0.0848 7.7721 17 6 5.2664 0.7054 9.0251 18 1 4.6503 1.5901 8.9599 19 6 5.5385 0.1438 10.2545 20 7 6.2890 -0.9332 10.3339 21 14 4.8420 0.9135 11.8075 22 1 4.0366 2.1086 11.4495 23 1 3.9791 -0.0735 12.5050 24 1 5.9561 1.3168 12.7027 25 6 2.1188 1.4146 2.4972 26 6 1.5698 2.1497 1.2728 27 1 -0.3633 0.4928 0.9018 28 1 -0.3633 0.5345 -0.8777 29 1 -0.3632 -1.0274 -0.0241 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.7535 1.6261 -2.1272 33 1 0.4063 2.2526 -1.1470 34 1 1.6306 4.1399 -2.1023 35 1 1.9196 4.0976 -0.3465 36 1 3.1687 3.5068 -1.4685 37 1 3.9043 0.9391 -0.9548 38 1 3.9325 2.4705 -0.0477 39 1 5.2078 0.7084 1.1422 40 1 3.7549 -0.3199 1.1762 41 1 4.0113 2.4426 2.4490 42 1 3.6307 0.0430 4.0693 43 1 7.8204 -0.0970 4.5021 44 1 7.7100 1.3332 5.3436 45 1 5.7428 1.9203 6.6476 46 1 4.2914 0.9003 6.5023 47 1 5.4660 -0.9389 7.6798 48 1 6.9174 0.0811 7.8251 49 1 6.4801 -1.3285 11.1988 50 1 1.7837 1.9188 3.4036 51 1 1.7554 0.3869 2.4971 52 1 1.9330 3.1774 1.2728 53 1 0.4803 2.1491 1.3068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424171529.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:58 Heat of formation + Delta-G solvation = -87.082419 kcal Electronic energy + Delta-G solvation = -26892.811867 eV Core-core repulsion = 23376.126337 eV Total energy + Delta-G solvation = -3516.685530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68275 -39.36396 -35.81114 -35.00470 -32.79123 -32.42617 -32.23034 -31.02806 -30.07507 -28.10550 -26.24944 -24.61983 -23.53869 -23.27452 -22.71605 -21.14733 -20.52058 -19.78151 -18.20939 -16.99034 -16.51003 -16.11557 -15.51033 -15.48666 -15.27090 -14.89863 -14.72030 -14.57562 -14.30769 -14.06207 -13.68391 -13.34679 -13.24422 -12.85334 -12.57932 -12.32813 -12.26366 -12.23051 -12.12800 -12.00666 -11.90205 -11.60009 -11.51616 -11.39210 -11.02085 -10.90692 -10.79445 -10.65675 -10.51467 -10.40101 -10.25939 -10.17008 -10.03126 -9.77899 -9.35691 -8.99304 -8.94404 -8.33032 -8.17608 -5.93227 -3.95231 2.83634 3.30852 3.34152 3.41757 3.45693 4.31437 4.36670 4.42927 4.50735 4.66254 4.83099 4.91895 4.92264 4.95608 5.08626 5.13304 5.15419 5.17612 5.19987 5.25809 5.37287 5.39743 5.42407 5.44787 5.55129 5.57482 5.60076 5.66026 5.74735 5.76410 5.83602 5.84962 5.86461 5.89206 5.94457 5.98476 6.04370 6.13682 6.23978 6.28927 6.45103 6.58583 6.68279 7.10772 7.42089 7.66624 7.77495 7.82721 7.97503 8.14238 8.39003 8.49532 9.13090 9.67944 11.17720 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.002559 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.400419 B =10937.228316 C =11509.799573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.057 4.057 4 C -0.113 4.113 5 C -0.158 4.158 6 C -0.106 4.106 7 C -0.129 4.129 8 C 0.145 3.855 9 N -0.728 5.728 10 C 0.484 3.516 11 O -0.555 6.555 12 C 0.077 3.923 13 H 0.096 0.904 14 N -0.807 5.807 15 C -0.094 4.094 16 C 0.031 3.969 17 C -0.521 4.521 18 H 0.052 0.948 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.129 4.129 26 C -0.107 4.107 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.401 0.599 43 H 0.333 0.667 44 H 0.347 0.653 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.013 0.987 48 H 0.035 0.965 49 H 0.259 0.741 50 H 0.069 0.931 51 H 0.071 0.929 52 H 0.066 0.934 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.218 2.902 -25.076 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.057 4.057 4 C -0.151 4.151 5 C -0.215 4.215 6 C -0.144 4.144 7 C -0.168 4.168 8 C 0.040 3.960 9 N -0.379 5.379 10 C 0.270 3.730 11 O -0.433 6.433 12 C -0.038 4.038 13 H 0.114 0.886 14 N -0.335 5.335 15 C -0.133 4.133 16 C -0.006 4.006 17 C -0.559 4.559 18 H 0.070 0.930 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.167 4.167 26 C -0.145 4.145 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.235 0.765 43 H 0.145 0.855 44 H 0.161 0.839 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.031 0.969 48 H 0.053 0.947 49 H 0.068 0.932 50 H 0.088 0.912 51 H 0.089 0.911 52 H 0.085 0.915 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.669 2.982 -24.640 27.015 hybrid contribution -0.771 0.537 0.181 0.957 sum -11.441 3.519 -24.458 27.230 Atomic orbital electron populations 1.21887 0.96071 1.01403 1.01973 1.21676 0.95761 0.95874 1.02131 1.20597 0.95090 0.95122 0.94882 1.21604 1.00224 0.95868 0.97372 1.21907 1.01131 0.96787 1.01697 1.21602 0.94251 1.01022 0.97539 1.21947 1.01010 0.99665 0.94154 1.20911 0.93103 0.97163 0.84779 1.46263 1.17299 1.43175 1.31179 1.22710 0.81208 0.83007 0.86089 1.90634 1.58365 1.34275 1.59989 1.21835 0.89474 1.00062 0.92471 0.88562 1.58998 1.05245 1.21715 1.47542 1.21643 0.98522 0.99980 0.93127 1.19021 0.98062 0.94130 0.89422 1.21321 1.31087 1.11843 0.91690 0.92957 1.24995 0.95331 0.95061 0.98999 1.69985 1.37877 1.20886 1.24455 0.86600 0.78854 0.79260 0.83637 1.19861 1.21116 1.21053 1.21860 0.94236 1.01762 0.98872 1.21618 1.00538 0.99250 0.93048 0.92418 0.92610 0.93082 0.91276 0.92275 0.92173 0.91774 0.93135 0.92334 0.92463 0.91954 0.91432 0.91727 0.91645 0.89911 0.76471 0.85537 0.83872 0.92919 0.92881 0.96909 0.94684 0.93166 0.91223 0.91066 0.91511 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.21 37.16 0.34 -0.64 16 2 C -0.12 -0.80 4.29 -26.73 -0.11 -0.92 16 3 C -0.06 -0.40 0.32 -154.50 -0.05 -0.45 16 4 C -0.11 -0.73 4.43 -26.73 -0.12 -0.85 16 5 C -0.16 -1.04 9.11 37.15 0.34 -0.71 16 6 C -0.11 -0.88 4.25 -26.73 -0.11 -1.00 16 7 C -0.13 -1.29 5.22 -26.73 -0.14 -1.43 16 8 C 0.15 1.59 2.45 -67.93 -0.17 1.42 16 9 N -0.73 -8.99 5.08 -53.81 -0.27 -9.27 16 10 C 0.48 7.60 7.03 -10.99 -0.08 7.52 16 11 O -0.55 -10.21 15.91 5.56 0.09 -10.12 16 12 C 0.08 1.30 3.15 -68.86 -0.22 1.09 16 13 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 14 N -0.81 -13.80 8.44 -5.65 -0.05 -13.85 16 15 C -0.09 -1.91 4.78 -26.73 -0.13 -2.04 16 16 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 17 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 21 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 C -0.13 -1.12 5.12 -26.73 -0.14 -1.26 16 26 C -0.11 -0.80 4.18 -26.73 -0.11 -0.92 16 27 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 28 H 0.05 0.33 6.43 -51.93 -0.33 -0.01 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.51 4.81 -51.93 -0.25 0.26 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.39 6.64 -51.93 -0.34 0.05 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.40 6.31 -51.93 -0.33 0.07 16 36 H 0.06 0.40 6.69 -51.92 -0.35 0.05 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.60 6.48 -51.93 -0.34 0.27 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.61 6.47 -51.93 -0.34 0.28 16 41 H 0.08 1.10 7.58 -51.93 -0.39 0.71 16 42 H 0.40 4.26 8.60 -40.82 -0.35 3.91 16 43 H 0.33 4.96 9.06 -39.29 -0.36 4.60 16 44 H 0.35 6.05 8.58 -39.29 -0.34 5.71 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.07 0.57 6.39 -51.93 -0.33 0.23 16 52 H 0.07 0.53 6.44 -51.93 -0.33 0.20 16 53 H 0.07 0.48 6.50 -51.93 -0.34 0.14 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -31.78 393.45 -9.48 -41.25 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -9.65 Total: 8.62 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -1.24 Total: -13.06 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.42 Total: -49.40 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.78 -9.48 -41.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424171529.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.829 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds