Wall clock time and date at job start Fri Apr 10 2020 22:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46878 * 2 1 4 4 C 1.52998 * 109.47335 * 301.91552 * 3 2 1 5 5 C 1.52994 * 109.47121 * 184.83922 * 4 3 2 6 6 C 1.53003 * 109.46999 * 181.91420 * 3 2 1 7 7 C 1.52998 * 109.47185 * 300.00224 * 6 3 2 8 8 C 1.52997 * 109.47034 * 299.99934 * 7 6 3 9 9 N 1.46506 * 109.47088 * 179.97438 * 8 7 6 10 10 C 1.34774 * 119.99900 * 85.00082 * 9 8 7 11 11 O 1.21280 * 120.00103 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00007 * 180.02562 * 10 9 8 13 13 H 1.08991 * 109.47478 * 39.99678 * 12 10 9 14 14 N 1.46900 * 109.47119 * 160.00045 * 12 10 9 15 15 C 1.53008 * 109.46834 * 279.99617 * 12 10 9 16 16 C 1.52995 * 109.46771 * 174.99831 * 15 12 10 17 17 C 1.50707 * 109.47162 * 180.02562 * 16 15 12 18 18 H 1.08000 * 119.99680 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99883 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00340 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99458 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47457 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46871 * 120.00165 * 21 19 17 24 24 H 1.48503 * 109.47281 * 240.00047 * 21 19 17 25 25 C 1.53001 * 109.47439 * 60.00402 * 8 7 6 26 26 C 1.52998 * 109.46679 * 299.99815 * 25 8 7 27 27 H 1.08998 * 109.46713 * 298.65486 * 1 2 3 28 28 H 1.08999 * 109.47046 * 58.65824 * 1 2 3 29 29 H 1.08998 * 109.46575 * 178.65875 * 1 2 3 30 30 H 1.09002 * 109.47110 * 120.00059 * 2 1 3 31 31 H 1.09000 * 109.47206 * 240.00391 * 2 1 3 32 32 H 1.09001 * 109.47219 * 304.84567 * 4 3 2 33 33 H 1.09001 * 109.46790 * 64.84039 * 4 3 2 34 34 H 1.08996 * 109.47200 * 185.67049 * 5 4 3 35 35 H 1.08995 * 109.47418 * 305.67777 * 5 4 3 36 36 H 1.09009 * 109.46955 * 65.67515 * 5 4 3 37 37 H 1.08996 * 109.47242 * 59.99989 * 6 3 2 38 38 H 1.08997 * 109.46814 * 180.02562 * 6 3 2 39 39 H 1.09003 * 109.47411 * 180.02562 * 7 6 3 40 40 H 1.09005 * 109.47199 * 59.99920 * 7 6 3 41 41 H 1.08994 * 109.47771 * 299.99761 * 8 7 6 42 42 H 0.97003 * 120.00374 * 264.99992 * 9 8 7 43 43 H 1.00897 * 111.00112 * 296.04387 * 14 12 10 44 44 H 1.00900 * 110.99927 * 59.99906 * 14 12 10 45 45 H 1.08997 * 109.47447 * 295.00334 * 15 12 10 46 46 H 1.09002 * 109.46904 * 55.00216 * 15 12 10 47 47 H 1.08997 * 109.47546 * 300.00442 * 16 15 12 48 48 H 1.09002 * 109.47092 * 60.00500 * 16 15 12 49 49 H 0.97006 * 120.00089 * 180.02562 * 20 19 17 50 50 H 1.08996 * 109.47601 * 180.02562 * 25 8 7 51 51 H 1.09005 * 109.47264 * 59.99726 * 25 8 7 52 52 H 1.08997 * 109.47353 * 299.99673 * 26 25 8 53 53 H 1.09003 * 109.47411 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4910 2.1776 -1.2244 5 6 2.0959 3.5814 -1.2901 6 6 3.5693 1.4429 -0.0482 7 6 4.1183 0.7078 1.1762 8 6 3.6480 1.4150 2.4488 9 7 4.1732 0.7108 3.6213 10 6 5.4101 0.9908 4.0775 11 8 6.0882 1.8261 3.5177 12 6 5.9505 0.2661 5.2832 13 1 5.6606 -0.7835 5.2364 14 7 7.4158 0.3690 5.3003 15 6 5.3801 0.8966 6.5553 16 6 5.8287 0.0848 7.7721 17 6 5.2664 0.7054 9.0251 18 1 4.6503 1.5901 8.9599 19 6 5.5385 0.1438 10.2545 20 7 6.2890 -0.9332 10.3339 21 14 4.8420 0.9135 11.8075 22 1 4.0366 2.1086 11.4495 23 1 3.9791 -0.0735 12.5050 24 1 5.9561 1.3168 12.7027 25 6 2.1188 1.4146 2.4972 26 6 1.5698 2.1497 1.2728 27 1 -0.3633 0.4928 0.9018 28 1 -0.3633 0.5345 -0.8777 29 1 -0.3632 -1.0274 -0.0241 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.7535 1.6261 -2.1272 33 1 0.4063 2.2526 -1.1470 34 1 1.6306 4.1399 -2.1023 35 1 1.9196 4.0976 -0.3465 36 1 3.1687 3.5068 -1.4685 37 1 3.9043 0.9391 -0.9548 38 1 3.9325 2.4705 -0.0477 39 1 5.2078 0.7084 1.1422 40 1 3.7549 -0.3199 1.1762 41 1 4.0113 2.4426 2.4490 42 1 3.6307 0.0430 4.0693 43 1 7.8204 -0.0970 4.5021 44 1 7.7100 1.3332 5.3436 45 1 5.7428 1.9203 6.6476 46 1 4.2914 0.9003 6.5023 47 1 5.4660 -0.9389 7.6798 48 1 6.9174 0.0811 7.8251 49 1 6.4801 -1.3285 11.1988 50 1 1.7837 1.9188 3.4036 51 1 1.7554 0.3869 2.4971 52 1 1.9330 3.1774 1.2728 53 1 0.4803 2.1491 1.3068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424171529.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:57 Heat of formation + Delta-G solvation = -107.305986 kcal Electronic energy + Delta-G solvation = -26893.688826 eV Core-core repulsion = 23376.126337 eV Total energy + Delta-G solvation = -3517.562490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56596 -40.43451 -36.99829 -36.38464 -34.80666 -33.30806 -32.78958 -31.92222 -31.72081 -29.01191 -27.81234 -25.75563 -24.65023 -24.07677 -23.36101 -22.44002 -21.76638 -21.14236 -19.02740 -18.47461 -17.92742 -17.55331 -16.88640 -16.47542 -16.19348 -15.96295 -15.68874 -15.56199 -15.43517 -15.03978 -14.97562 -14.41290 -14.30022 -13.96555 -13.79518 -13.56491 -13.41567 -13.23840 -12.93950 -12.83184 -12.80644 -12.69123 -12.56067 -12.48599 -12.25903 -12.23647 -12.02052 -11.76337 -11.71486 -11.64569 -11.38865 -11.24103 -11.02388 -10.92992 -10.86363 -10.82642 -10.49270 -10.03496 -9.59937 -8.13839 -6.24031 1.41374 1.42401 1.53609 1.55790 2.20489 2.44806 3.19228 3.57494 3.64676 3.69606 3.77942 3.91402 4.00705 4.09998 4.16239 4.29739 4.33020 4.36566 4.41233 4.46520 4.52885 4.58493 4.66604 4.70126 4.76993 4.78577 4.81345 4.93956 4.94767 4.99670 5.09564 5.10367 5.17228 5.21235 5.23675 5.25703 5.27365 5.33956 5.35660 5.38713 5.52640 5.57458 5.57624 5.62799 5.70061 5.84841 5.98923 6.10546 6.30704 6.47621 6.55922 6.94862 7.19338 7.44139 8.97601 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.002559 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.400419 B =10937.228316 C =11509.799573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.051 4.051 4 C -0.110 4.110 5 C -0.159 4.159 6 C -0.103 4.103 7 C -0.122 4.122 8 C 0.145 3.855 9 N -0.714 5.714 10 C 0.490 3.510 11 O -0.583 6.583 12 C 0.085 3.915 13 H 0.109 0.891 14 N -0.819 5.819 15 C -0.080 4.080 16 C 0.039 3.961 17 C -0.542 4.542 18 H 0.055 0.945 19 C 0.001 3.999 20 N -0.930 5.930 21 Si 0.960 3.040 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.281 1.281 25 C -0.123 4.123 26 C -0.105 4.105 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.412 0.588 43 H 0.346 0.654 44 H 0.344 0.656 45 H 0.040 0.960 46 H 0.067 0.933 47 H -0.005 1.005 48 H 0.005 0.995 49 H 0.262 0.738 50 H 0.066 0.934 51 H 0.084 0.916 52 H 0.060 0.940 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 3.039 -25.782 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.051 4.051 4 C -0.147 4.147 5 C -0.216 4.216 6 C -0.141 4.141 7 C -0.161 4.161 8 C 0.041 3.959 9 N -0.364 5.364 10 C 0.275 3.725 11 O -0.464 6.464 12 C -0.031 4.031 13 H 0.127 0.873 14 N -0.348 5.348 15 C -0.119 4.119 16 C 0.002 3.998 17 C -0.580 4.580 18 H 0.073 0.927 19 C -0.197 4.197 20 N -0.570 5.570 21 Si 0.785 3.215 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.207 1.207 25 C -0.160 4.160 26 C -0.143 4.143 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.249 0.751 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.013 0.987 48 H 0.023 0.977 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.103 0.897 52 H 0.079 0.921 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.840 3.105 -25.368 28.601 hybrid contribution -0.087 0.476 0.369 0.608 sum -12.926 3.580 -24.999 28.370 Atomic orbital electron populations 1.21874 0.95385 1.01658 1.02253 1.21657 0.96319 0.95323 1.01999 1.20542 0.93915 0.95576 0.95064 1.21580 1.00602 0.95508 0.97031 1.21908 1.00830 0.97106 1.01741 1.21578 0.95335 1.00286 0.96871 1.21869 0.99427 1.00397 0.94388 1.21007 0.94712 0.95693 0.84482 1.46186 1.16155 1.42842 1.31267 1.22313 0.82001 0.82494 0.85718 1.90628 1.59384 1.35484 1.60868 1.21641 0.89412 1.00556 0.91506 0.87286 1.58978 1.05605 1.21698 1.48516 1.21375 0.99410 0.98441 0.92659 1.18829 0.95928 0.93839 0.91199 1.21757 1.31179 1.12041 0.93035 0.92664 1.25907 0.95613 0.95515 1.02659 1.70112 1.39124 1.22310 1.25497 0.85480 0.78222 0.78669 0.79136 1.18802 1.20230 1.20719 1.21825 0.92080 1.02747 0.99388 1.21621 1.01229 0.98783 0.92629 0.92365 0.92079 0.92907 0.91739 0.92107 0.91814 0.90968 0.92470 0.92745 0.93108 0.91326 0.92300 0.94246 0.90565 0.92402 0.75148 0.84130 0.84225 0.94121 0.91413 0.98711 0.97695 0.92932 0.91544 0.89741 0.92109 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.21 71.98 0.66 -0.87 16 2 C -0.12 -1.32 4.29 30.60 0.13 -1.19 16 3 C -0.05 -0.63 0.32 -52.18 -0.02 -0.64 16 4 C -0.11 -1.19 4.43 30.59 0.14 -1.05 16 5 C -0.16 -1.89 9.11 71.98 0.66 -1.24 16 6 C -0.10 -1.61 4.25 30.59 0.13 -1.48 16 7 C -0.12 -2.36 5.22 30.59 0.16 -2.20 16 8 C 0.15 3.08 2.45 44.99 0.11 3.19 16 9 N -0.71 -16.94 5.08 -442.53 -2.25 -19.18 16 10 C 0.49 15.19 7.03 87.66 0.62 15.81 16 11 O -0.58 -21.64 15.91 -3.03 -0.05 -21.68 16 12 C 0.08 2.83 3.15 44.17 0.14 2.97 16 13 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 14 N -0.82 -28.33 8.44 -171.80 -1.45 -29.78 16 15 C -0.08 -3.26 4.78 30.60 0.15 -3.12 16 16 C 0.04 2.05 4.86 29.85 0.15 2.20 16 17 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 18 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 19 C 0.00 0.04 5.46 84.65 0.46 0.51 16 20 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 21 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 22 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 C -0.12 -1.91 5.12 30.59 0.16 -1.75 16 26 C -0.10 -1.39 4.18 30.60 0.13 -1.26 16 27 H 0.06 0.57 6.54 -2.39 -0.02 0.56 16 28 H 0.06 0.55 6.43 -2.39 -0.02 0.53 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.80 4.81 -2.39 -0.01 0.79 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.69 6.64 -2.39 -0.02 0.68 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 0.69 6.31 -2.39 -0.02 0.67 16 36 H 0.05 0.66 6.69 -2.38 -0.02 0.65 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.03 6.48 -2.39 -0.02 1.02 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.31 6.47 -2.38 -0.02 1.29 16 41 H 0.06 1.55 7.58 -2.39 -0.02 1.53 16 42 H 0.41 8.03 8.60 -92.71 -0.80 7.23 16 43 H 0.35 10.31 9.06 -89.70 -0.81 9.50 16 44 H 0.34 12.25 8.58 -89.69 -0.77 11.48 16 45 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 47 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 48 H 0.00 0.27 7.75 -2.39 -0.02 0.25 16 49 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 50 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.08 1.12 6.39 -2.38 -0.02 1.11 16 52 H 0.06 0.90 6.44 -2.39 -0.02 0.89 16 53 H 0.08 0.92 6.50 -2.39 -0.02 0.90 16 Total: -1.00 -68.45 393.45 1.09 -67.35 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -1.47 Total: 34.12 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 4.00 Total: -20.81 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -3.41 Total: -105.60 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.68 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -68.45 1.09 -67.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424171529.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.952 kcal (2) G-P(sol) polarization free energy of solvation -68.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds