Wall clock time and date at job start Fri Apr 10 2020 22:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47402 * 2 1 4 4 C 1.52994 * 109.47207 * 185.27951 * 3 2 1 5 5 C 1.52997 * 109.47479 * 301.09670 * 4 3 2 6 6 C 1.52998 * 109.46981 * 305.28420 * 3 2 1 7 7 C 1.53000 * 109.47287 * 179.97438 * 6 3 2 8 8 C 1.53001 * 109.46862 * 300.00325 * 7 6 3 9 9 N 1.46500 * 109.46938 * 180.02562 * 8 7 6 10 10 C 1.34772 * 120.00101 * 154.99865 * 9 8 7 11 11 O 1.21285 * 120.00340 * 359.97438 * 10 9 8 12 12 C 1.50706 * 120.00199 * 179.97438 * 10 9 8 13 13 H 1.08997 * 109.47128 * 319.99987 * 12 10 9 14 14 N 1.46891 * 109.47245 * 199.99666 * 12 10 9 15 15 C 1.52999 * 109.46914 * 79.99748 * 12 10 9 16 16 C 1.53000 * 109.47405 * 185.00149 * 15 12 10 17 17 C 1.50700 * 109.47628 * 180.02562 * 16 15 12 18 18 H 1.08007 * 119.99547 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00283 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99880 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47205 * 89.99692 * 21 19 17 23 23 H 1.48499 * 109.47116 * 209.99740 * 21 19 17 24 24 H 1.48504 * 109.46687 * 329.99677 * 21 19 17 25 25 C 1.52992 * 109.47431 * 59.99456 * 8 7 6 26 26 C 1.52999 * 109.46751 * 65.28218 * 3 2 1 27 27 H 1.09003 * 109.47098 * 62.99303 * 1 2 3 28 28 H 1.09001 * 109.47294 * 182.99175 * 1 2 3 29 29 H 1.08997 * 109.47260 * 302.99618 * 1 2 3 30 30 H 1.09000 * 109.47157 * 239.99997 * 2 1 3 31 31 H 1.08999 * 109.46933 * 119.99995 * 2 1 3 32 32 H 1.09008 * 109.47006 * 61.09528 * 4 3 2 33 33 H 1.09002 * 109.47373 * 181.09085 * 4 3 2 34 34 H 1.08999 * 109.47623 * 178.83931 * 5 4 3 35 35 H 1.09005 * 109.47028 * 298.83958 * 5 4 3 36 36 H 1.09002 * 109.47404 * 58.83318 * 5 4 3 37 37 H 1.09003 * 109.47364 * 59.99623 * 6 3 2 38 38 H 1.09004 * 109.46940 * 299.99655 * 6 3 2 39 39 H 1.08991 * 109.47281 * 179.97438 * 7 6 3 40 40 H 1.09001 * 109.46668 * 59.99317 * 7 6 3 41 41 H 1.09003 * 109.46681 * 299.99548 * 8 7 6 42 42 H 0.97004 * 119.99999 * 334.99365 * 9 8 7 43 43 H 1.00904 * 111.00173 * 176.04577 * 14 12 10 44 44 H 1.00899 * 111.00756 * 300.00100 * 14 12 10 45 45 H 1.09007 * 109.47510 * 305.00258 * 15 12 10 46 46 H 1.09001 * 109.47408 * 65.00384 * 15 12 10 47 47 H 1.08997 * 109.46911 * 300.00609 * 16 15 12 48 48 H 1.09002 * 109.47101 * 60.00042 * 16 15 12 49 49 H 0.97000 * 119.99874 * 180.02562 * 20 19 17 50 50 H 1.09003 * 109.47114 * 60.00357 * 25 8 7 51 51 H 1.09007 * 109.47246 * 179.97438 * 25 8 7 52 52 H 1.09003 * 109.47043 * 300.00040 * 26 3 2 53 53 H 1.08991 * 109.47549 * 60.00147 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5642 1.4445 -0.1327 5 6 4.1785 0.6626 1.0301 6 6 1.4245 2.2011 -1.1775 7 6 1.9340 3.6437 -1.1772 8 6 1.5349 4.3252 0.1332 9 7 2.0223 5.7068 0.1333 10 6 1.4068 6.6384 0.8880 11 8 0.4492 6.3333 1.5668 12 6 1.9085 8.0595 0.8885 13 1 2.9985 8.0601 0.8837 14 7 1.4237 8.7495 2.0913 15 6 1.3927 8.7829 -0.3571 16 6 2.0018 10.1849 -0.4217 17 6 1.4933 10.8976 -1.6483 18 1 0.8048 10.4001 -2.3154 19 6 1.9077 12.1843 -1.9195 20 7 2.7464 12.7899 -1.1074 21 14 1.2768 13.0680 -3.4395 22 1 0.0324 13.8049 -3.1029 23 1 2.3056 14.0263 -3.9177 24 1 0.9911 12.0752 -4.5063 25 6 2.1504 3.5666 1.3107 26 6 1.6414 2.1243 1.3104 27 1 -0.3633 0.4667 -0.9156 28 1 -0.3634 -1.0263 0.0536 29 1 -0.3633 0.5596 0.8619 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8475 0.9760 -1.0754 33 1 3.9293 2.4714 -0.1133 34 1 5.2632 0.6465 0.9244 35 1 3.9123 1.1429 1.9717 36 1 3.7975 -0.3586 1.0228 37 1 0.3386 2.1996 -1.0829 38 1 1.7086 1.7153 -2.1110 39 1 1.4959 4.1840 -2.0163 40 1 3.0200 3.6455 -1.2715 41 1 0.4490 4.3234 0.2276 42 1 2.7880 5.9510 -0.4098 43 1 1.7991 9.6845 2.1479 44 1 0.4152 8.7625 2.1191 45 1 1.6774 8.2217 -1.2472 46 1 0.3066 8.8605 -0.3086 47 1 1.7171 10.7460 0.4683 48 1 3.0880 10.1073 -0.4703 49 1 3.0377 13.6953 -1.2980 50 1 3.2363 3.5685 1.2163 51 1 1.8664 4.0525 2.2443 52 1 0.5555 2.1229 1.4049 53 1 2.0798 1.5840 2.1492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424171530.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:00 Heat of formation + Delta-G solvation = -87.971495 kcal Electronic energy + Delta-G solvation = -26895.377549 eV Core-core repulsion = 23378.653466 eV Total energy + Delta-G solvation = -3516.724083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61159 -39.22139 -35.85542 -35.11964 -32.85018 -32.36487 -32.19753 -30.94514 -29.87208 -28.11760 -26.32091 -24.57900 -23.61486 -23.32249 -22.69131 -21.14223 -20.53757 -19.74958 -18.15395 -17.18105 -16.39681 -16.17967 -15.43914 -15.32371 -14.85292 -14.83226 -14.66991 -14.43192 -14.25730 -14.13672 -13.57068 -13.40754 -13.06143 -12.95187 -12.76031 -12.48134 -12.22167 -12.14464 -12.13016 -12.01057 -11.90265 -11.71807 -11.57768 -11.33332 -11.08062 -10.91062 -10.84679 -10.80577 -10.67952 -10.35048 -10.21789 -10.10313 -9.98156 -9.85467 -9.26983 -9.16459 -8.87070 -8.44071 -8.15471 -6.08627 -4.11720 3.00205 3.26961 3.32332 3.33753 3.36820 4.36707 4.39252 4.42008 4.46865 4.70181 4.87253 4.97411 5.02353 5.11325 5.14012 5.17545 5.20642 5.22518 5.23708 5.27754 5.32408 5.41874 5.45971 5.50649 5.61118 5.61892 5.65765 5.70509 5.75661 5.79363 5.81431 5.88692 5.89799 5.93488 5.98628 6.06771 6.11626 6.17814 6.27653 6.30416 6.37122 6.53567 6.67989 6.88718 7.47021 7.52813 7.62558 7.77786 7.88575 7.93131 8.31369 8.54866 8.94309 9.53183 11.02298 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.002516 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.185636 B =11125.656533 C =11508.228820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C -0.057 4.057 4 C -0.117 4.117 5 C -0.156 4.156 6 C -0.106 4.106 7 C -0.130 4.130 8 C 0.149 3.851 9 N -0.732 5.732 10 C 0.526 3.474 11 O -0.539 6.539 12 C 0.074 3.926 13 H 0.095 0.905 14 N -0.831 5.831 15 C -0.137 4.137 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.130 4.130 26 C -0.107 4.107 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.400 0.600 43 H 0.353 0.647 44 H 0.345 0.655 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.017 0.983 48 H 0.018 0.982 49 H 0.261 0.739 50 H 0.065 0.935 51 H 0.067 0.933 52 H 0.065 0.935 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 -25.728 2.005 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.150 4.150 3 C -0.057 4.057 4 C -0.154 4.154 5 C -0.213 4.213 6 C -0.144 4.144 7 C -0.168 4.168 8 C 0.044 3.956 9 N -0.384 5.384 10 C 0.313 3.687 11 O -0.415 6.415 12 C -0.041 4.041 13 H 0.113 0.887 14 N -0.363 5.363 15 C -0.176 4.176 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.168 4.168 26 C -0.145 4.145 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.234 0.766 43 H 0.169 0.831 44 H 0.158 0.842 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.071 0.929 50 H 0.084 0.916 51 H 0.085 0.915 52 H 0.084 0.916 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.038 -26.343 2.945 26.527 hybrid contribution -0.297 1.423 -1.846 2.350 sum 0.741 -24.920 1.100 24.955 Atomic orbital electron populations 1.21911 0.96051 1.01307 1.02272 1.21600 0.95804 0.95843 1.01799 1.20595 0.95041 0.94700 0.95377 1.21671 0.94333 1.00953 0.98469 1.21881 1.00144 1.00343 0.98949 1.21598 1.00728 0.94195 0.97845 1.21860 1.01805 0.96088 0.96999 1.20868 0.99698 0.80471 0.94536 1.46093 1.34997 1.08950 1.48351 1.20865 0.82615 0.87260 0.77941 1.90623 1.27543 1.81933 1.41416 1.21479 1.00605 0.90036 0.92017 0.88712 1.58742 1.15045 1.24172 1.38316 1.22369 1.00565 0.99705 0.95000 1.19101 0.96019 0.88863 0.97308 1.21184 1.27385 0.98990 1.08598 0.92742 1.25013 0.95027 0.97533 0.96766 1.69950 1.32806 1.13365 1.37101 0.86584 0.78600 0.79573 0.83205 1.20616 1.21150 1.19887 1.21945 1.00678 0.95179 0.99046 1.21613 1.01150 0.94973 0.96741 0.92407 0.93175 0.92332 0.92201 0.91821 0.92279 0.91248 0.93130 0.92410 0.92658 0.91293 0.91662 0.91263 0.91155 0.89874 0.76650 0.83145 0.84182 0.92583 0.92757 0.96427 0.96352 0.92886 0.91611 0.91463 0.91639 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.14 37.16 0.34 -0.73 16 2 C -0.11 -0.75 4.45 -26.73 -0.12 -0.87 16 3 C -0.06 -0.42 0.32 -154.51 -0.05 -0.47 16 4 C -0.12 -0.83 4.29 -26.74 -0.11 -0.95 16 5 C -0.16 -1.06 9.21 37.16 0.34 -0.72 16 6 C -0.11 -0.82 4.23 -26.73 -0.11 -0.93 16 7 C -0.13 -1.15 5.12 -26.73 -0.14 -1.29 16 8 C 0.15 1.69 2.45 -67.93 -0.17 1.52 16 9 N -0.73 -9.44 5.08 -53.81 -0.27 -9.71 16 10 C 0.53 8.74 7.04 -10.98 -0.08 8.67 16 11 O -0.54 -10.58 15.91 5.55 0.09 -10.49 16 12 C 0.07 1.27 3.21 -68.87 -0.22 1.05 16 13 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 14 N -0.83 -14.58 8.93 -5.66 -0.05 -14.63 16 15 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 16 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 17 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 21 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.13 -1.37 5.22 -26.76 -0.14 -1.51 16 26 C -0.11 -0.93 4.16 -26.76 -0.11 -1.04 16 27 H 0.06 0.39 6.52 -51.93 -0.34 0.05 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.42 6.44 -51.93 -0.33 0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.42 6.68 -51.93 -0.35 0.07 16 32 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.07 0.54 4.81 -51.93 -0.25 0.29 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.42 6.52 -51.93 -0.34 0.08 16 36 H 0.05 0.35 6.46 -51.93 -0.34 0.01 16 37 H 0.07 0.56 6.41 -51.93 -0.33 0.23 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.57 6.45 -51.93 -0.34 0.24 16 41 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 42 H 0.40 4.40 8.60 -40.82 -0.35 4.05 16 43 H 0.35 6.21 7.55 -39.29 -0.30 5.91 16 44 H 0.35 6.15 8.58 -39.29 -0.34 5.82 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 50 H 0.07 0.65 6.41 -51.93 -0.33 0.32 16 51 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 52 H 0.06 0.61 6.51 -51.93 -0.34 0.27 16 53 H 0.07 0.54 6.48 -51.93 -0.34 0.20 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -30.64 391.50 -9.40 -40.04 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -9.55 Total: 10.77 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.24 Total: -12.81 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.41 Total: -49.70 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.64 -9.40 -40.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424171530.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.931 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds