Wall clock time and date at job start Fri Apr 10 2020 22:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47402 * 2 1 4 4 C 1.52994 * 109.47207 * 185.27951 * 3 2 1 5 5 C 1.52997 * 109.47479 * 301.09670 * 4 3 2 6 6 C 1.52998 * 109.46981 * 305.28420 * 3 2 1 7 7 C 1.53000 * 109.47287 * 179.97438 * 6 3 2 8 8 C 1.53001 * 109.46862 * 300.00325 * 7 6 3 9 9 N 1.46500 * 109.46938 * 180.02562 * 8 7 6 10 10 C 1.34772 * 120.00101 * 154.99865 * 9 8 7 11 11 O 1.21285 * 120.00340 * 359.97438 * 10 9 8 12 12 C 1.50706 * 120.00199 * 179.97438 * 10 9 8 13 13 H 1.08997 * 109.47128 * 319.99987 * 12 10 9 14 14 N 1.46891 * 109.47245 * 199.99666 * 12 10 9 15 15 C 1.52999 * 109.46914 * 79.99748 * 12 10 9 16 16 C 1.53000 * 109.47405 * 185.00149 * 15 12 10 17 17 C 1.50700 * 109.47628 * 180.02562 * 16 15 12 18 18 H 1.08007 * 119.99547 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00283 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99880 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47205 * 89.99692 * 21 19 17 23 23 H 1.48499 * 109.47116 * 209.99740 * 21 19 17 24 24 H 1.48504 * 109.46687 * 329.99677 * 21 19 17 25 25 C 1.52992 * 109.47431 * 59.99456 * 8 7 6 26 26 C 1.52999 * 109.46751 * 65.28218 * 3 2 1 27 27 H 1.09003 * 109.47098 * 62.99303 * 1 2 3 28 28 H 1.09001 * 109.47294 * 182.99175 * 1 2 3 29 29 H 1.08997 * 109.47260 * 302.99618 * 1 2 3 30 30 H 1.09000 * 109.47157 * 239.99997 * 2 1 3 31 31 H 1.08999 * 109.46933 * 119.99995 * 2 1 3 32 32 H 1.09008 * 109.47006 * 61.09528 * 4 3 2 33 33 H 1.09002 * 109.47373 * 181.09085 * 4 3 2 34 34 H 1.08999 * 109.47623 * 178.83931 * 5 4 3 35 35 H 1.09005 * 109.47028 * 298.83958 * 5 4 3 36 36 H 1.09002 * 109.47404 * 58.83318 * 5 4 3 37 37 H 1.09003 * 109.47364 * 59.99623 * 6 3 2 38 38 H 1.09004 * 109.46940 * 299.99655 * 6 3 2 39 39 H 1.08991 * 109.47281 * 179.97438 * 7 6 3 40 40 H 1.09001 * 109.46668 * 59.99317 * 7 6 3 41 41 H 1.09003 * 109.46681 * 299.99548 * 8 7 6 42 42 H 0.97004 * 119.99999 * 334.99365 * 9 8 7 43 43 H 1.00904 * 111.00173 * 176.04577 * 14 12 10 44 44 H 1.00899 * 111.00756 * 300.00100 * 14 12 10 45 45 H 1.09007 * 109.47510 * 305.00258 * 15 12 10 46 46 H 1.09001 * 109.47408 * 65.00384 * 15 12 10 47 47 H 1.08997 * 109.46911 * 300.00609 * 16 15 12 48 48 H 1.09002 * 109.47101 * 60.00042 * 16 15 12 49 49 H 0.97000 * 119.99874 * 180.02562 * 20 19 17 50 50 H 1.09003 * 109.47114 * 60.00357 * 25 8 7 51 51 H 1.09007 * 109.47246 * 179.97438 * 25 8 7 52 52 H 1.09003 * 109.47043 * 300.00040 * 26 3 2 53 53 H 1.08991 * 109.47549 * 60.00147 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5642 1.4445 -0.1327 5 6 4.1785 0.6626 1.0301 6 6 1.4245 2.2011 -1.1775 7 6 1.9340 3.6437 -1.1772 8 6 1.5349 4.3252 0.1332 9 7 2.0223 5.7068 0.1333 10 6 1.4068 6.6384 0.8880 11 8 0.4492 6.3333 1.5668 12 6 1.9085 8.0595 0.8885 13 1 2.9985 8.0601 0.8837 14 7 1.4237 8.7495 2.0913 15 6 1.3927 8.7829 -0.3571 16 6 2.0018 10.1849 -0.4217 17 6 1.4933 10.8976 -1.6483 18 1 0.8048 10.4001 -2.3154 19 6 1.9077 12.1843 -1.9195 20 7 2.7464 12.7899 -1.1074 21 14 1.2768 13.0680 -3.4395 22 1 0.0324 13.8049 -3.1029 23 1 2.3056 14.0263 -3.9177 24 1 0.9911 12.0752 -4.5063 25 6 2.1504 3.5666 1.3107 26 6 1.6414 2.1243 1.3104 27 1 -0.3633 0.4667 -0.9156 28 1 -0.3634 -1.0263 0.0536 29 1 -0.3633 0.5596 0.8619 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8475 0.9760 -1.0754 33 1 3.9293 2.4714 -0.1133 34 1 5.2632 0.6465 0.9244 35 1 3.9123 1.1429 1.9717 36 1 3.7975 -0.3586 1.0228 37 1 0.3386 2.1996 -1.0829 38 1 1.7086 1.7153 -2.1110 39 1 1.4959 4.1840 -2.0163 40 1 3.0200 3.6455 -1.2715 41 1 0.4490 4.3234 0.2276 42 1 2.7880 5.9510 -0.4098 43 1 1.7991 9.6845 2.1479 44 1 0.4152 8.7625 2.1191 45 1 1.6774 8.2217 -1.2472 46 1 0.3066 8.8605 -0.3086 47 1 1.7171 10.7460 0.4683 48 1 3.0880 10.1073 -0.4703 49 1 3.0377 13.6953 -1.2980 50 1 3.2363 3.5685 1.2163 51 1 1.8664 4.0525 2.2443 52 1 0.5555 2.1229 1.4049 53 1 2.0798 1.5840 2.1492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424171530.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:59 Heat of formation + Delta-G solvation = -106.990555 kcal Electronic energy + Delta-G solvation = -26896.202278 eV Core-core repulsion = 23378.653466 eV Total energy + Delta-G solvation = -3517.548812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51044 -40.35759 -37.21335 -36.37231 -34.83832 -33.27950 -32.78435 -31.68813 -31.68078 -29.06495 -27.79895 -25.85342 -24.71312 -24.08755 -23.34288 -22.48384 -21.74486 -21.09893 -19.08434 -18.58328 -18.01250 -17.46112 -16.56975 -16.20939 -16.07236 -15.89177 -15.75540 -15.56262 -15.43413 -15.17282 -14.78487 -14.65284 -14.30465 -13.99215 -13.92173 -13.62254 -13.43171 -13.17290 -12.96959 -12.89620 -12.74228 -12.69635 -12.60837 -12.52533 -12.50936 -12.31707 -12.04113 -11.81639 -11.71711 -11.53375 -11.44299 -11.30712 -10.99827 -10.89342 -10.79744 -10.62753 -10.56572 -9.99815 -9.63747 -8.21902 -6.32355 1.39422 1.39892 1.50592 1.64715 2.16942 2.39743 3.11733 3.65636 3.72118 3.75160 3.77604 3.91809 4.01524 4.12138 4.19231 4.25788 4.32214 4.39332 4.44137 4.48568 4.55922 4.59345 4.66423 4.68673 4.72042 4.80169 4.83175 4.84839 4.95168 5.02621 5.08384 5.12856 5.13512 5.19790 5.22669 5.24934 5.30908 5.36387 5.37566 5.40748 5.46024 5.56472 5.59486 5.64544 5.65654 5.71880 5.80224 6.07425 6.20843 6.46794 6.58755 6.83126 7.28450 7.36810 8.88906 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.002516 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.185636 B =11125.656533 C =11508.228820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.110 4.110 3 C -0.051 4.051 4 C -0.116 4.116 5 C -0.156 4.156 6 C -0.104 4.104 7 C -0.122 4.122 8 C 0.148 3.852 9 N -0.717 5.717 10 C 0.527 3.473 11 O -0.573 6.573 12 C 0.080 3.920 13 H 0.108 0.892 14 N -0.831 5.831 15 C -0.119 4.119 16 C 0.030 3.970 17 C -0.545 4.545 18 H 0.054 0.946 19 C 0.005 3.995 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.265 1.265 25 C -0.123 4.123 26 C -0.103 4.103 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.411 0.589 43 H 0.352 0.648 44 H 0.343 0.657 45 H 0.066 0.934 46 H 0.042 0.958 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.264 0.736 50 H 0.075 0.925 51 H 0.037 0.963 52 H 0.056 0.944 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 -27.291 0.490 27.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.051 4.051 4 C -0.153 4.153 5 C -0.213 4.213 6 C -0.142 4.142 7 C -0.160 4.160 8 C 0.044 3.956 9 N -0.368 5.368 10 C 0.314 3.686 11 O -0.452 6.452 12 C -0.035 4.035 13 H 0.126 0.874 14 N -0.362 5.362 15 C -0.159 4.159 16 C -0.007 4.007 17 C -0.583 4.583 18 H 0.073 0.927 19 C -0.194 4.194 20 N -0.567 5.567 21 Si 0.784 3.216 22 H -0.201 1.201 23 H -0.206 1.206 24 H -0.189 1.189 25 C -0.161 4.161 26 C -0.141 4.141 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.248 0.752 43 H 0.167 0.833 44 H 0.156 0.844 45 H 0.085 0.915 46 H 0.061 0.939 47 H 0.020 0.980 48 H 0.021 0.979 49 H 0.073 0.927 50 H 0.094 0.906 51 H 0.056 0.944 52 H 0.075 0.925 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.584 -27.936 1.410 28.016 hybrid contribution -0.449 1.889 -1.342 2.360 sum 1.136 -26.047 0.067 26.072 Atomic orbital electron populations 1.21912 0.96298 1.01565 1.01829 1.21574 0.95536 0.95207 1.02378 1.20542 0.95420 0.94994 0.94164 1.21660 0.93772 1.00790 0.99053 1.21873 1.00372 1.00582 0.98440 1.21606 1.00441 0.93445 0.98705 1.21827 1.02672 0.96478 0.95053 1.20987 0.98366 0.79708 0.96539 1.46023 1.34640 1.09144 1.47013 1.20695 0.82343 0.87426 0.78173 1.90613 1.29054 1.82399 1.43092 1.21425 1.01232 0.90323 0.90557 0.87396 1.58757 1.14927 1.24097 1.38398 1.22117 0.99421 0.97536 0.96842 1.18965 0.95056 0.91058 0.95612 1.21618 1.27401 0.99640 1.09602 0.92728 1.25872 0.95203 0.98445 0.99846 1.70062 1.33953 1.13788 1.38884 0.85534 0.78054 0.78416 0.79580 1.20146 1.20625 1.18916 1.21858 1.01165 0.95987 0.97104 1.21582 1.00561 0.93862 0.98059 0.92481 0.92530 0.93234 0.91308 0.91522 0.91384 0.91785 0.92831 0.93096 0.92022 0.91843 0.90180 0.91441 0.89753 0.92291 0.75235 0.83321 0.84409 0.91516 0.93906 0.98046 0.97926 0.92722 0.90608 0.94414 0.92534 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.14 71.98 0.66 -1.27 16 2 C -0.11 -1.23 4.45 30.59 0.14 -1.09 16 3 C -0.05 -0.65 0.32 -52.18 -0.02 -0.67 16 4 C -0.12 -1.36 4.29 30.59 0.13 -1.23 16 5 C -0.16 -1.78 9.21 71.98 0.66 -1.12 16 6 C -0.10 -1.41 4.23 30.59 0.13 -1.28 16 7 C -0.12 -1.96 5.12 30.59 0.16 -1.80 16 8 C 0.15 3.28 2.45 44.99 0.11 3.39 16 9 N -0.72 -17.90 5.08 -442.54 -2.25 -20.15 16 10 C 0.53 17.42 7.04 87.66 0.62 18.04 16 11 O -0.57 -22.79 15.91 -3.04 -0.05 -22.84 16 12 C 0.08 2.72 3.21 44.17 0.14 2.87 16 13 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 14 N -0.83 -29.43 8.93 -171.81 -1.54 -30.96 16 15 C -0.12 -4.69 4.78 30.59 0.15 -4.54 16 16 C 0.03 1.49 4.74 29.85 0.14 1.63 16 17 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 18 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 19 C 0.00 0.27 5.46 84.65 0.46 0.73 16 20 N -0.93 -54.48 13.29 21.44 0.28 -54.19 16 21 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 25 C -0.12 -2.53 5.22 30.57 0.16 -2.37 16 26 C -0.10 -1.70 4.16 30.58 0.13 -1.57 16 27 H 0.06 0.70 6.52 -2.39 -0.02 0.68 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.69 6.44 -2.39 -0.02 0.67 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.73 6.68 -2.39 -0.02 0.71 16 32 H 0.07 0.71 8.14 -2.38 -0.02 0.70 16 33 H 0.06 0.83 4.81 -2.39 -0.01 0.82 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 35 H 0.05 0.65 6.52 -2.38 -0.02 0.64 16 36 H 0.06 0.63 6.46 -2.39 -0.02 0.61 16 37 H 0.06 0.95 6.41 -2.39 -0.02 0.94 16 38 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.14 6.45 -2.39 -0.02 1.13 16 41 H 0.06 1.63 7.58 -2.39 -0.02 1.61 16 42 H 0.41 8.37 8.60 -92.71 -0.80 7.57 16 43 H 0.35 12.58 7.55 -89.69 -0.68 11.91 16 44 H 0.34 12.45 8.58 -89.69 -0.77 11.68 16 45 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 46 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.00 0.07 6.87 -2.39 -0.02 0.05 16 48 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 49 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 50 H 0.08 1.41 6.41 -2.39 -0.02 1.39 16 51 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 52 H 0.06 1.04 6.51 -2.39 -0.02 1.03 16 53 H 0.07 1.11 6.48 -2.39 -0.02 1.09 16 Total: -1.00 -65.44 391.50 1.15 -64.29 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -1.33 Total: 38.49 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 4.00 Total: -20.05 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -3.50 Total: -105.30 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -65.44 1.15 -64.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424171530.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.700 kcal (2) G-P(sol) polarization free energy of solvation -65.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds