Wall clock time and date at job start Fri Apr 10 2020 22:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47406 * 2 1 4 4 C 1.53001 * 108.45361 * 187.56772 * 3 2 1 5 5 C 1.53008 * 109.46726 * 289.46339 * 4 3 2 6 6 C 1.53839 * 108.62270 * 69.68631 * 3 2 1 7 7 C 1.52835 * 113.06542 * 195.97660 * 6 3 2 8 8 C 1.51035 * 112.18703 * 318.06170 * 7 6 3 9 9 N 1.47424 * 106.57154 * 90.01906 * 8 7 6 10 10 C 1.34778 * 118.49717 * 100.91269 * 9 8 7 11 11 O 1.21277 * 119.99706 * 355.03386 * 10 9 8 12 12 C 1.50697 * 119.99758 * 175.03330 * 10 9 8 13 13 H 1.08996 * 109.47037 * 43.82067 * 12 10 9 14 14 N 1.46895 * 109.46885 * 163.81762 * 12 10 9 15 15 C 1.53005 * 109.47159 * 283.81808 * 12 10 9 16 16 C 1.52992 * 109.47206 * 175.00300 * 15 12 10 17 17 C 1.50699 * 109.47252 * 180.02562 * 16 15 12 18 18 H 1.07999 * 119.99676 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00152 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47263 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47112 * 119.99996 * 21 19 17 24 24 H 1.48504 * 109.47401 * 239.99780 * 21 19 17 25 25 C 1.40516 * 123.00208 * 280.89416 * 9 8 7 26 26 C 1.51005 * 108.61863 * 305.43924 * 3 2 1 27 27 H 1.09002 * 109.46686 * 304.78283 * 1 2 3 28 28 H 1.08995 * 109.46927 * 64.77662 * 1 2 3 29 29 H 1.08996 * 109.47321 * 184.78285 * 1 2 3 30 30 H 1.09003 * 109.46890 * 239.99858 * 2 1 3 31 31 H 1.09004 * 109.47019 * 119.99888 * 2 1 3 32 32 H 1.08999 * 109.47011 * 49.45793 * 4 3 2 33 33 H 1.08998 * 109.47323 * 169.46705 * 4 3 2 34 34 H 1.08994 * 109.47359 * 51.98787 * 5 4 3 35 35 H 1.09004 * 109.46625 * 171.98771 * 5 4 3 36 36 H 1.08999 * 109.47026 * 291.98657 * 5 4 3 37 37 H 1.09005 * 108.76543 * 316.90385 * 6 3 2 38 38 H 1.09003 * 108.76284 * 75.16734 * 6 3 2 39 39 H 1.08997 * 108.94349 * 197.36482 * 7 6 3 40 40 H 1.09003 * 108.93566 * 78.75636 * 7 6 3 41 41 H 1.09000 * 110.02686 * 330.75791 * 8 7 6 42 42 H 1.08990 * 110.03198 * 209.28250 * 8 7 6 43 43 H 1.00902 * 111.00009 * 59.99938 * 14 12 10 44 44 H 1.00903 * 111.00104 * 183.95084 * 14 12 10 45 45 H 1.09001 * 109.46888 * 295.00595 * 15 12 10 46 46 H 1.08998 * 109.47203 * 54.99900 * 15 12 10 47 47 H 1.09001 * 109.47438 * 299.99959 * 16 15 12 48 48 H 1.08998 * 109.47366 * 59.99700 * 16 15 12 49 49 H 0.97001 * 119.99480 * 180.02562 * 20 19 17 50 50 H 1.08997 * 109.34912 * 179.32698 * 25 9 8 51 51 H 1.09005 * 109.35061 * 299.03006 * 25 9 8 52 52 H 1.09005 * 109.59374 * 94.37258 * 26 3 2 53 53 H 1.08996 * 109.72704 * 333.98201 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5579 1.4194 -0.1911 5 6 4.2229 0.8718 1.0734 6 6 1.7267 2.0743 1.3672 7 6 1.8309 3.5991 1.3601 8 6 3.0329 4.0850 0.5855 9 7 2.5889 4.2685 -0.8083 10 6 2.3098 5.5160 -1.2353 11 8 2.3389 6.4445 -0.4557 12 6 1.9618 5.7570 -2.6816 13 1 1.2681 4.9881 -3.0214 14 7 1.3348 7.0781 -2.8207 15 6 3.2353 5.7052 -3.5281 16 6 2.8688 5.8255 -5.0086 17 6 4.1231 5.7738 -5.8424 18 1 5.0854 5.6664 -5.3641 19 6 4.0422 5.8647 -7.2158 20 7 2.8704 5.9970 -7.7982 21 14 5.5969 5.8014 -8.2493 22 1 6.7765 5.6500 -7.3601 23 1 5.5268 4.6454 -9.1787 24 1 5.7235 7.0579 -9.0307 25 6 2.4437 3.2023 -1.7119 26 6 1.4185 2.1736 -1.1659 27 1 -0.3633 0.5863 0.8441 28 1 -0.3633 0.4379 -0.9296 29 1 -0.3634 -1.0240 0.0857 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8077 0.7809 -1.0385 33 1 3.9157 2.4314 -0.3806 34 1 3.7630 -0.0788 1.3432 35 1 5.2865 0.7215 0.8886 36 1 4.0928 1.5828 1.8893 37 1 0.7149 1.7933 1.6597 38 1 2.4263 1.6801 2.1043 39 1 1.9057 3.9534 2.3882 40 1 0.9287 4.0132 0.9097 41 1 3.8299 3.3427 0.6287 42 1 3.3819 5.0333 0.9939 43 1 1.9585 7.8087 -2.5119 44 1 1.0337 7.2373 -3.7705 45 1 3.8915 6.5294 -3.2481 46 1 3.7476 4.7586 -3.3563 47 1 2.2127 5.0014 -5.2887 48 1 2.3566 6.7721 -5.1805 49 1 2.8135 6.0606 -8.7644 50 1 2.0945 3.5862 -2.6704 51 1 3.4071 2.7111 -1.8489 52 1 0.5199 2.6938 -0.8340 53 1 1.1605 1.4626 -1.9507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424189819.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:03 Heat of formation + Delta-G solvation = -32.747350 kcal Electronic energy + Delta-G solvation = -28234.268620 eV Core-core repulsion = 24719.939235 eV Total energy + Delta-G solvation = -3514.329385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32488 -39.00347 -35.66424 -35.43753 -33.24304 -32.75592 -32.05350 -30.24856 -29.87171 -27.63039 -26.00127 -25.62925 -23.87516 -23.40615 -22.62787 -21.58922 -20.31551 -18.90131 -17.79033 -17.52980 -16.32688 -16.08047 -15.92562 -15.50179 -15.28420 -14.61339 -14.42049 -14.27550 -14.11687 -13.91903 -13.75228 -13.20864 -13.10556 -13.04166 -12.71497 -12.39117 -12.33030 -12.12970 -12.07115 -11.83628 -11.81341 -11.47077 -11.39399 -11.07502 -11.05011 -10.92497 -10.85410 -10.74550 -10.64840 -10.27809 -10.16342 -9.99559 -9.95715 -9.82861 -9.24743 -9.10622 -8.44627 -8.36380 -8.14414 -6.09012 -4.11956 2.95101 3.24039 3.25655 3.33869 3.37666 4.39013 4.47270 4.51139 4.57360 4.76956 4.94717 4.99193 5.04891 5.11247 5.15696 5.19521 5.21096 5.25803 5.27519 5.33777 5.38506 5.46133 5.54473 5.58706 5.64152 5.68586 5.74648 5.78188 5.81121 5.82551 5.87604 5.90232 5.98131 6.01107 6.08625 6.12270 6.17494 6.23659 6.29523 6.35651 6.41899 6.53355 6.83003 6.87566 7.45451 7.52183 7.61217 7.72815 7.88268 7.93328 8.30963 8.50253 8.94219 9.53080 11.01897 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.003617 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.694309 B = 7739.885723 C = 8438.157711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.052 4.052 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.115 4.115 7 C -0.131 4.131 8 C 0.098 3.902 9 N -0.601 5.601 10 C 0.519 3.481 11 O -0.537 6.537 12 C 0.071 3.929 13 H 0.098 0.902 14 N -0.830 5.830 15 C -0.139 4.139 16 C 0.025 3.975 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.087 3.913 26 C -0.125 4.125 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.344 0.656 44 H 0.353 0.647 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.018 0.982 48 H 0.017 0.983 49 H 0.261 0.739 50 H 0.095 0.905 51 H 0.075 0.925 52 H 0.068 0.932 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 -12.221 17.625 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.052 4.052 4 C -0.184 4.184 5 C -0.214 4.214 6 C -0.152 4.152 7 C -0.170 4.170 8 C -0.024 4.024 9 N -0.334 5.334 10 C 0.307 3.693 11 O -0.413 6.413 12 C -0.044 4.044 13 H 0.116 0.884 14 N -0.362 5.362 15 C -0.179 4.179 16 C -0.012 4.012 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.037 4.037 26 C -0.163 4.163 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.157 0.843 44 H 0.168 0.832 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.070 0.930 50 H 0.113 0.887 51 H 0.093 0.907 52 H 0.087 0.913 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.042 -11.996 18.403 22.177 hybrid contribution 1.536 -0.054 -1.416 2.090 sum -1.506 -12.049 16.987 20.881 Atomic orbital electron populations 1.21882 0.96080 1.01167 1.02217 1.21726 0.95777 0.95902 1.01773 1.20315 0.95064 0.94942 0.94843 1.22483 0.94887 1.02886 0.98123 1.21974 1.00102 1.01077 0.98284 1.21920 1.01830 0.94936 0.96518 1.21557 0.99432 0.95664 1.00301 1.21756 0.97210 1.02548 0.80841 1.46686 1.67560 1.06885 1.12318 1.21035 0.75429 0.82235 0.90564 1.90606 1.51337 1.42635 1.56717 1.21547 0.97660 0.94312 0.90839 0.88414 1.58752 1.45332 1.02449 1.29673 1.22415 0.95042 1.01587 0.98808 1.19099 0.97133 0.97272 0.87744 1.21211 0.93130 1.50346 0.91362 0.92692 1.25005 0.96023 0.95140 0.98101 1.69963 1.23199 1.50041 1.09968 0.86546 0.83520 0.77674 0.80340 1.19762 1.20950 1.20959 1.21334 1.00016 0.88845 0.93553 1.22107 0.98777 0.98009 0.97430 0.92606 0.92346 0.93229 0.91940 0.92206 0.91804 0.89028 0.92676 0.93080 0.92308 0.92125 0.91305 0.91823 0.91565 0.88708 0.89495 0.84260 0.83190 0.92774 0.92362 0.96368 0.96428 0.92952 0.88708 0.90678 0.91323 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.37 37.16 0.35 -0.87 16 2 C -0.11 -0.90 4.34 -26.73 -0.12 -1.01 16 3 C -0.05 -0.44 0.27 -155.08 -0.04 -0.49 16 4 C -0.15 -1.28 3.03 -26.73 -0.08 -1.36 16 5 C -0.16 -1.19 8.52 37.16 0.32 -0.88 16 6 C -0.11 -0.99 4.48 -26.38 -0.12 -1.10 16 7 C -0.13 -1.36 5.35 -27.80 -0.15 -1.51 16 8 C 0.10 1.14 5.51 -4.53 -0.02 1.12 16 9 N -0.60 -8.08 2.34 -177.20 -0.41 -8.49 16 10 C 0.52 8.78 6.88 -10.99 -0.08 8.70 16 11 O -0.54 -10.61 15.57 5.56 0.09 -10.53 16 12 C 0.07 1.23 2.34 -68.87 -0.16 1.07 16 13 H 0.10 1.62 6.51 -51.93 -0.34 1.28 16 14 N -0.83 -14.63 8.90 -5.66 -0.05 -14.68 16 15 C -0.14 -2.72 4.47 -26.73 -0.12 -2.83 16 16 C 0.02 0.59 4.74 -27.89 -0.13 0.46 16 17 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 21 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.09 1.05 4.59 -5.99 -0.03 1.02 16 26 C -0.12 -1.25 3.93 -26.59 -0.10 -1.36 16 27 H 0.05 0.44 6.27 -51.93 -0.33 0.11 16 28 H 0.06 0.48 6.86 -51.93 -0.36 0.12 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.50 8.01 -51.93 -0.42 0.08 16 31 H 0.06 0.44 6.81 -51.93 -0.35 0.09 16 32 H 0.06 0.57 7.94 -51.93 -0.41 0.16 16 33 H 0.09 0.90 2.79 -51.93 -0.14 0.76 16 34 H 0.05 0.39 6.57 -51.93 -0.34 0.05 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.43 5.99 -51.93 -0.31 0.12 16 37 H 0.06 0.52 6.08 -51.93 -0.32 0.20 16 38 H 0.07 0.54 5.31 -51.93 -0.28 0.26 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.83 7.42 -51.93 -0.39 0.44 16 41 H 0.10 0.95 3.87 -51.93 -0.20 0.75 16 42 H 0.09 1.16 7.10 -51.93 -0.37 0.79 16 43 H 0.34 6.15 8.61 -39.29 -0.34 5.81 16 44 H 0.35 6.20 7.55 -39.29 -0.30 5.90 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.09 6.94 -51.93 -0.36 0.73 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 49 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 50 H 0.09 1.27 4.54 -51.93 -0.24 1.03 16 51 H 0.08 0.86 5.47 -51.93 -0.28 0.58 16 52 H 0.07 0.76 7.34 -51.93 -0.38 0.38 16 53 H 0.08 0.72 7.15 -51.93 -0.37 0.35 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -30.06 372.10 -8.78 -38.83 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -8.82 Total: 10.26 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.90 Total: -12.01 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.27 Total: -48.28 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.06 -8.78 -38.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424189819.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.086 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds