Wall clock time and date at job start Fri Apr 10 2020 22:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47406 * 2 1 4 4 C 1.53001 * 108.45361 * 187.56772 * 3 2 1 5 5 C 1.53008 * 109.46726 * 289.46339 * 4 3 2 6 6 C 1.53839 * 108.62270 * 69.68631 * 3 2 1 7 7 C 1.52835 * 113.06542 * 195.97660 * 6 3 2 8 8 C 1.51035 * 112.18703 * 318.06170 * 7 6 3 9 9 N 1.47424 * 106.57154 * 90.01906 * 8 7 6 10 10 C 1.34778 * 118.49717 * 100.91269 * 9 8 7 11 11 O 1.21277 * 119.99706 * 355.03386 * 10 9 8 12 12 C 1.50697 * 119.99758 * 175.03330 * 10 9 8 13 13 H 1.08996 * 109.47037 * 43.82067 * 12 10 9 14 14 N 1.46895 * 109.46885 * 163.81762 * 12 10 9 15 15 C 1.53005 * 109.47159 * 283.81808 * 12 10 9 16 16 C 1.52992 * 109.47206 * 175.00300 * 15 12 10 17 17 C 1.50699 * 109.47252 * 180.02562 * 16 15 12 18 18 H 1.07999 * 119.99676 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00152 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47263 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47112 * 119.99996 * 21 19 17 24 24 H 1.48504 * 109.47401 * 239.99780 * 21 19 17 25 25 C 1.40516 * 123.00208 * 280.89416 * 9 8 7 26 26 C 1.51005 * 108.61863 * 305.43924 * 3 2 1 27 27 H 1.09002 * 109.46686 * 304.78283 * 1 2 3 28 28 H 1.08995 * 109.46927 * 64.77662 * 1 2 3 29 29 H 1.08996 * 109.47321 * 184.78285 * 1 2 3 30 30 H 1.09003 * 109.46890 * 239.99858 * 2 1 3 31 31 H 1.09004 * 109.47019 * 119.99888 * 2 1 3 32 32 H 1.08999 * 109.47011 * 49.45793 * 4 3 2 33 33 H 1.08998 * 109.47323 * 169.46705 * 4 3 2 34 34 H 1.08994 * 109.47359 * 51.98787 * 5 4 3 35 35 H 1.09004 * 109.46625 * 171.98771 * 5 4 3 36 36 H 1.08999 * 109.47026 * 291.98657 * 5 4 3 37 37 H 1.09005 * 108.76543 * 316.90385 * 6 3 2 38 38 H 1.09003 * 108.76284 * 75.16734 * 6 3 2 39 39 H 1.08997 * 108.94349 * 197.36482 * 7 6 3 40 40 H 1.09003 * 108.93566 * 78.75636 * 7 6 3 41 41 H 1.09000 * 110.02686 * 330.75791 * 8 7 6 42 42 H 1.08990 * 110.03198 * 209.28250 * 8 7 6 43 43 H 1.00902 * 111.00009 * 59.99938 * 14 12 10 44 44 H 1.00903 * 111.00104 * 183.95084 * 14 12 10 45 45 H 1.09001 * 109.46888 * 295.00595 * 15 12 10 46 46 H 1.08998 * 109.47203 * 54.99900 * 15 12 10 47 47 H 1.09001 * 109.47438 * 299.99959 * 16 15 12 48 48 H 1.08998 * 109.47366 * 59.99700 * 16 15 12 49 49 H 0.97001 * 119.99480 * 180.02562 * 20 19 17 50 50 H 1.08997 * 109.34912 * 179.32698 * 25 9 8 51 51 H 1.09005 * 109.35061 * 299.03006 * 25 9 8 52 52 H 1.09005 * 109.59374 * 94.37258 * 26 3 2 53 53 H 1.08996 * 109.72704 * 333.98201 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5579 1.4194 -0.1911 5 6 4.2229 0.8718 1.0734 6 6 1.7267 2.0743 1.3672 7 6 1.8309 3.5991 1.3601 8 6 3.0329 4.0850 0.5855 9 7 2.5889 4.2685 -0.8083 10 6 2.3098 5.5160 -1.2353 11 8 2.3389 6.4445 -0.4557 12 6 1.9618 5.7570 -2.6816 13 1 1.2681 4.9881 -3.0214 14 7 1.3348 7.0781 -2.8207 15 6 3.2353 5.7052 -3.5281 16 6 2.8688 5.8255 -5.0086 17 6 4.1231 5.7738 -5.8424 18 1 5.0854 5.6664 -5.3641 19 6 4.0422 5.8647 -7.2158 20 7 2.8704 5.9970 -7.7982 21 14 5.5969 5.8014 -8.2493 22 1 6.7765 5.6500 -7.3601 23 1 5.5268 4.6454 -9.1787 24 1 5.7235 7.0579 -9.0307 25 6 2.4437 3.2023 -1.7119 26 6 1.4185 2.1736 -1.1659 27 1 -0.3633 0.5863 0.8441 28 1 -0.3633 0.4379 -0.9296 29 1 -0.3634 -1.0240 0.0857 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8077 0.7809 -1.0385 33 1 3.9157 2.4314 -0.3806 34 1 3.7630 -0.0788 1.3432 35 1 5.2865 0.7215 0.8886 36 1 4.0928 1.5828 1.8893 37 1 0.7149 1.7933 1.6597 38 1 2.4263 1.6801 2.1043 39 1 1.9057 3.9534 2.3882 40 1 0.9287 4.0132 0.9097 41 1 3.8299 3.3427 0.6287 42 1 3.3819 5.0333 0.9939 43 1 1.9585 7.8087 -2.5119 44 1 1.0337 7.2373 -3.7705 45 1 3.8915 6.5294 -3.2481 46 1 3.7476 4.7586 -3.3563 47 1 2.2127 5.0014 -5.2887 48 1 2.3566 6.7721 -5.1805 49 1 2.8135 6.0606 -8.7644 50 1 2.0945 3.5862 -2.6704 51 1 3.4071 2.7111 -1.8489 52 1 0.5199 2.6938 -0.8340 53 1 1.1605 1.4626 -1.9507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424189819.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:02 Heat of formation + Delta-G solvation = -50.217769 kcal Electronic energy + Delta-G solvation = -28235.026194 eV Core-core repulsion = 24719.939235 eV Total energy + Delta-G solvation = -3515.086959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34071 -40.13421 -37.19931 -36.56573 -34.90268 -33.98484 -32.72328 -31.69590 -31.07862 -28.88548 -27.34871 -26.53495 -25.41079 -24.35567 -23.30910 -22.79589 -21.85150 -20.09557 -19.02002 -18.51003 -18.26158 -17.24172 -16.87597 -16.54345 -16.33851 -16.18719 -15.62499 -15.55941 -15.37423 -14.80320 -14.76802 -14.59379 -14.50007 -14.04841 -13.89466 -13.65131 -13.45190 -13.21477 -13.08539 -12.93130 -12.81237 -12.70195 -12.55946 -12.49568 -12.31464 -12.15719 -11.87779 -11.82255 -11.76545 -11.60729 -11.42955 -11.27661 -11.01744 -10.88671 -10.74911 -10.57854 -10.54704 -9.66449 -9.44123 -8.20980 -6.31192 1.38878 1.40669 1.52166 1.58672 2.07236 2.40336 3.12889 3.53730 3.71374 3.73090 3.81200 3.84926 4.05072 4.09141 4.12166 4.18143 4.24267 4.33847 4.42726 4.48922 4.51198 4.61896 4.63332 4.65985 4.70612 4.74110 4.81907 4.86112 4.93609 4.97317 5.06038 5.08354 5.09667 5.16520 5.20961 5.25284 5.29952 5.36475 5.38813 5.43538 5.46988 5.52935 5.64171 5.64733 5.70167 5.76854 5.80698 6.05924 6.21470 6.45448 6.47258 6.84042 7.19590 7.38031 8.90007 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.003617 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.694309 B = 7739.885723 C = 8438.157711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C -0.049 4.049 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.110 4.110 7 C -0.125 4.125 8 C 0.096 3.904 9 N -0.589 5.589 10 C 0.516 3.484 11 O -0.570 6.570 12 C 0.078 3.922 13 H 0.106 0.894 14 N -0.830 5.830 15 C -0.120 4.120 16 C 0.032 3.968 17 C -0.542 4.542 18 H 0.054 0.946 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.958 3.042 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.281 1.281 25 C 0.081 3.919 26 C -0.117 4.117 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.343 0.657 44 H 0.352 0.648 45 H 0.043 0.957 46 H 0.067 0.933 47 H 0.002 0.998 48 H 0.001 0.999 49 H 0.264 0.736 50 H 0.079 0.921 51 H 0.087 0.913 52 H 0.058 0.942 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 -14.108 18.587 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.147 4.147 3 C -0.049 4.049 4 C -0.183 4.183 5 C -0.212 4.212 6 C -0.147 4.147 7 C -0.163 4.163 8 C -0.025 4.025 9 N -0.320 5.320 10 C 0.305 3.695 11 O -0.449 6.449 12 C -0.037 4.037 13 H 0.124 0.876 14 N -0.361 5.361 15 C -0.160 4.160 16 C -0.005 4.005 17 C -0.580 4.580 18 H 0.073 0.927 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.783 3.217 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.207 1.207 25 C -0.043 4.043 26 C -0.155 4.155 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.135 0.865 42 H 0.088 0.912 43 H 0.156 0.844 44 H 0.166 0.834 45 H 0.061 0.939 46 H 0.085 0.915 47 H 0.020 0.980 48 H 0.019 0.981 49 H 0.072 0.928 50 H 0.098 0.902 51 H 0.104 0.896 52 H 0.077 0.923 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.075 -13.922 19.379 23.952 hybrid contribution 1.212 0.509 -1.712 2.159 sum -0.863 -13.413 17.667 22.198 Atomic orbital electron populations 1.21878 0.96104 1.01571 1.01799 1.21682 0.95681 0.95039 1.02304 1.20285 0.95040 0.95412 0.94161 1.22427 0.94781 1.02087 0.98957 1.21956 1.00143 1.01521 0.97592 1.21898 1.02625 0.93312 0.96847 1.21487 0.97487 0.97039 1.00333 1.21941 0.98503 1.02400 0.79619 1.46704 1.66015 1.06037 1.13258 1.20895 0.75619 0.83033 0.89981 1.90590 1.53177 1.43845 1.57256 1.21455 0.96609 0.94398 0.91212 0.87647 1.58764 1.45250 1.02625 1.29488 1.22145 0.95966 1.01520 0.96323 1.18948 0.95708 0.95636 0.90226 1.21619 0.94074 1.50159 0.92172 0.92730 1.25841 0.99142 0.94739 0.99437 1.70072 1.25276 1.50900 1.10386 0.85505 0.79785 0.77781 0.78627 1.18963 1.20229 1.20652 1.21471 1.01261 0.88813 0.92750 1.22044 0.97699 0.97488 0.98316 0.92656 0.93099 0.92503 0.91909 0.91167 0.91796 0.90399 0.91825 0.92935 0.91872 0.91680 0.89721 0.90778 0.93896 0.86522 0.91227 0.84418 0.83355 0.93867 0.91459 0.97953 0.98085 0.92757 0.90235 0.89559 0.92339 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.37 71.98 0.67 -1.43 16 2 C -0.11 -1.43 4.34 30.59 0.13 -1.30 16 3 C -0.05 -0.74 0.27 -52.55 -0.01 -0.75 16 4 C -0.15 -2.19 3.03 30.60 0.09 -2.10 16 5 C -0.16 -1.89 8.52 71.98 0.61 -1.27 16 6 C -0.11 -1.63 4.48 30.82 0.14 -1.49 16 7 C -0.13 -2.45 5.35 29.90 0.16 -2.28 16 8 C 0.10 2.15 5.51 85.56 0.47 2.62 16 9 N -0.59 -15.59 2.34 -832.92 -1.95 -17.54 16 10 C 0.52 17.61 6.88 87.66 0.60 18.21 16 11 O -0.57 -22.84 15.57 -3.02 -0.05 -22.89 16 12 C 0.08 2.74 2.34 44.17 0.10 2.85 16 13 H 0.11 3.54 6.51 -2.39 -0.02 3.52 16 14 N -0.83 -29.92 8.90 -171.81 -1.53 -31.45 16 15 C -0.12 -4.74 4.47 30.59 0.14 -4.60 16 16 C 0.03 1.57 4.74 29.85 0.14 1.71 16 17 C -0.54 -29.64 9.11 25.60 0.23 -29.41 16 18 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 19 C 0.01 0.38 5.46 84.65 0.46 0.84 16 20 N -0.93 -54.11 13.29 21.45 0.28 -53.82 16 21 Si 0.96 43.17 29.54 68.60 2.03 45.19 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.08 1.89 4.59 88.20 0.41 2.30 16 26 C -0.12 -2.21 3.93 30.68 0.12 -2.09 16 27 H 0.05 0.75 6.27 -2.39 -0.01 0.74 16 28 H 0.05 0.76 6.86 -2.39 -0.02 0.74 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.84 8.01 -2.39 -0.02 0.82 16 31 H 0.07 0.80 6.81 -2.38 -0.02 0.79 16 32 H 0.06 0.98 7.94 -2.39 -0.02 0.96 16 33 H 0.08 1.38 2.79 -2.39 -0.01 1.37 16 34 H 0.06 0.69 6.57 -2.39 -0.02 0.67 16 35 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.72 5.99 -2.39 -0.01 0.70 16 37 H 0.06 0.95 6.08 -2.38 -0.01 0.93 16 38 H 0.08 1.03 5.31 -2.39 -0.01 1.02 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.04 1.05 7.42 -2.39 -0.02 1.03 16 41 H 0.12 2.13 3.87 -2.39 -0.01 2.13 16 42 H 0.07 1.84 7.10 -2.39 -0.02 1.82 16 43 H 0.34 12.55 8.61 -89.69 -0.77 11.78 16 44 H 0.35 12.73 7.55 -89.69 -0.68 12.06 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 46 H 0.07 2.51 6.94 -2.39 -0.02 2.50 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.00 0.05 6.87 -2.39 -0.02 0.03 16 49 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 50 H 0.08 2.11 4.54 -2.39 -0.01 2.10 16 51 H 0.09 1.87 5.47 -2.38 -0.01 1.85 16 52 H 0.06 1.24 7.34 -2.38 -0.02 1.23 16 53 H 0.08 1.47 7.15 -2.39 -0.02 1.45 16 Total: -1.00 -64.09 372.10 2.74 -61.35 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.52 Total: 37.36 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 4.47 Total: -18.20 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -3.19 Total: -102.81 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -64.09 2.74 -61.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424189819.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.130 kcal (2) G-P(sol) polarization free energy of solvation -64.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds