Wall clock time and date at job start Fri Apr 10 2020 22:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.54960 * 109.47085 * 2 1 4 4 C 1.53055 * 106.73401 * 185.64878 * 3 2 1 5 5 C 1.52992 * 109.47348 * 302.45609 * 4 3 2 6 6 C 1.48860 * 107.19612 * 305.77249 * 3 2 1 7 7 C 1.51093 * 112.08775 * 192.77590 * 6 3 2 8 8 C 1.46717 * 115.78505 * 264.84097 * 7 6 3 9 9 N 1.50523 * 107.04631 * 62.55768 * 8 7 6 10 10 C 1.34146 * 120.80929 * 117.55490 * 9 8 7 11 11 O 1.21280 * 119.99556 * 179.97438 * 10 9 8 12 12 C 1.50697 * 120.00168 * 0.02562 * 10 9 8 13 13 H 1.08997 * 109.47225 * 320.00390 * 12 10 9 14 14 N 1.46899 * 109.47341 * 199.99489 * 12 10 9 15 15 C 1.53005 * 109.46828 * 79.99984 * 12 10 9 16 16 C 1.53002 * 109.46968 * 185.00121 * 15 12 10 17 17 C 1.50699 * 109.47227 * 179.97438 * 16 15 12 18 18 H 1.07994 * 120.00014 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99988 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99882 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99791 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47566 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47230 * 120.00226 * 21 19 17 24 24 H 1.48502 * 109.47181 * 239.99780 * 21 19 17 25 25 C 1.43104 * 118.00872 * 297.84789 * 9 8 7 26 26 C 1.54539 * 106.99974 * 68.38460 * 3 2 1 27 27 H 1.09002 * 109.46887 * 184.79161 * 1 2 3 28 28 H 1.09001 * 109.46858 * 304.78495 * 1 2 3 29 29 H 1.08998 * 109.47301 * 64.78364 * 1 2 3 30 30 H 1.08995 * 109.47074 * 240.00227 * 2 1 3 31 31 H 1.09000 * 109.47775 * 119.99984 * 2 1 3 32 32 H 1.09001 * 109.47293 * 62.46302 * 4 3 2 33 33 H 1.09005 * 109.47124 * 182.45478 * 4 3 2 34 34 H 1.08996 * 109.47317 * 297.95353 * 5 4 3 35 35 H 1.08997 * 109.47096 * 57.95330 * 5 4 3 36 36 H 1.09004 * 109.47271 * 177.95639 * 5 4 3 37 37 H 1.09854 * 110.07515 * 69.77361 * 6 3 2 38 38 H 1.10421 * 108.96732 * 313.52868 * 6 3 2 39 39 H 1.10788 * 107.01066 * 147.34238 * 7 6 3 40 40 H 1.07803 * 113.65995 * 30.96878 * 7 6 3 41 41 H 1.08908 * 110.01068 * 302.82725 * 8 7 6 42 42 H 1.08907 * 109.69036 * 181.71069 * 8 7 6 43 43 H 1.00898 * 111.00252 * 300.00724 * 14 12 10 44 44 H 1.00900 * 110.99531 * 63.95579 * 14 12 10 45 45 H 1.09003 * 109.47108 * 304.99880 * 15 12 10 46 46 H 1.08999 * 109.47448 * 64.99823 * 15 12 10 47 47 H 1.09003 * 109.47009 * 299.99819 * 16 15 12 48 48 H 1.08999 * 109.47279 * 59.99599 * 16 15 12 49 49 H 0.97001 * 119.99917 * 180.02562 * 20 19 17 50 50 H 1.09345 * 107.61635 * 211.64586 * 25 9 8 51 51 H 1.09138 * 108.87676 * 327.54451 * 25 9 8 52 52 H 1.09814 * 108.77359 * 356.48889 * 26 3 2 53 53 H 1.09062 * 109.48521 * 114.19634 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0465 1.4610 0.0000 4 6 3.5686 1.3903 -0.1443 5 6 4.1508 0.5540 0.9969 6 6 1.4095 2.1530 -1.1538 7 6 2.0604 3.4845 -1.4476 8 6 1.4182 4.6563 -0.8418 9 7 1.5040 4.4840 0.6511 10 6 2.1866 5.3582 1.4055 11 8 2.2457 5.2054 2.6072 12 6 2.8791 6.5308 0.7601 13 1 3.3390 6.2114 -0.1751 14 7 3.9155 7.0460 1.6647 15 6 1.8569 7.6331 0.4753 16 6 2.5342 8.7709 -0.2914 17 6 1.5273 9.8563 -0.5725 18 1 0.5066 9.7460 -0.2374 19 6 1.9095 10.9909 -1.2565 20 7 3.1526 11.1255 -1.6640 21 14 0.6616 12.3366 -1.6042 22 1 -0.6570 11.9457 -1.0443 23 1 1.1109 13.6035 -0.9730 24 1 0.5391 12.5310 -3.0713 25 6 0.8419 3.3586 1.2368 26 6 1.6839 2.0684 1.3739 27 1 -0.3633 -1.0241 0.0858 28 1 -0.3633 0.5863 0.8440 29 1 -0.3634 0.4378 -0.9297 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8221 0.9290 -1.0988 33 1 3.9844 2.3972 -0.1056 34 1 3.9286 1.0345 1.9496 35 1 3.7078 -0.4418 0.9802 36 1 5.2309 0.4733 0.8739 37 1 0.3358 2.2894 -0.9656 38 1 1.4888 1.5088 -2.0470 39 1 1.9978 3.6413 -2.5425 40 1 3.1108 3.5150 -1.2070 41 1 0.3766 4.7137 -1.1545 42 1 1.9471 5.5602 -1.1409 43 1 3.5141 7.3488 2.5394 44 1 4.6372 6.3574 1.8171 45 1 1.0415 7.2267 -0.1231 46 1 1.4617 8.0142 1.4169 47 1 3.3496 9.1773 0.3070 48 1 2.9294 8.3897 -1.2330 49 1 3.4216 11.9238 -2.1449 50 1 0.5103 3.6531 2.2363 51 1 -0.0523 3.1321 0.6534 52 1 1.1089 1.3287 1.9468 53 1 2.5976 2.2856 1.9283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424189822.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:05 Heat of formation + Delta-G solvation = -61.621946 kcal Electronic energy + Delta-G solvation = -27952.270484 eV Core-core repulsion = 24436.689003 eV Total energy + Delta-G solvation = -3515.581481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76840 -39.04445 -35.88979 -35.28122 -32.94044 -32.69474 -32.11133 -30.55652 -30.03486 -27.46699 -26.45176 -25.30142 -24.02103 -23.04326 -22.26773 -22.00923 -20.18946 -18.89698 -17.94713 -17.19412 -16.47572 -16.02669 -15.77749 -15.41928 -15.25858 -14.85055 -14.58397 -14.41832 -14.28622 -13.89728 -13.87039 -13.50598 -13.12663 -12.98143 -12.40346 -12.33961 -12.24440 -12.09306 -11.99762 -11.88544 -11.59327 -11.56619 -11.39364 -11.17160 -11.08721 -10.92366 -10.89362 -10.61318 -10.49329 -10.38928 -10.32363 -10.06470 -9.96292 -9.77450 -9.34374 -8.97644 -8.58450 -8.32418 -8.16138 -5.93448 -3.95392 2.85853 3.11768 3.33952 3.41747 3.45608 4.35533 4.39772 4.49914 4.52217 4.70785 4.85875 4.92921 4.96990 4.98386 5.04862 5.12109 5.14420 5.20644 5.28061 5.28749 5.38190 5.42211 5.48687 5.53831 5.61863 5.65774 5.67906 5.72349 5.77337 5.80913 5.82704 5.85774 5.89252 5.97629 5.99347 6.02244 6.12151 6.17396 6.29747 6.35995 6.44938 6.64110 6.73980 7.10178 7.41864 7.57812 7.76880 7.83555 7.97030 8.14087 8.40374 8.49457 9.12901 9.67828 11.17445 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.021394 B = 0.003140 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.448364 B = 8915.784546 C = 9285.532591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.122 4.122 3 C -0.049 4.049 4 C -0.113 4.113 5 C -0.157 4.157 6 C -0.098 4.098 7 C -0.143 4.143 8 C 0.105 3.895 9 N -0.601 5.601 10 C 0.485 3.515 11 O -0.557 6.557 12 C 0.078 3.922 13 H 0.096 0.904 14 N -0.808 5.808 15 C -0.096 4.096 16 C 0.032 3.968 17 C -0.521 4.521 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.113 3.887 26 C -0.123 4.123 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.347 0.653 44 H 0.332 0.668 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.035 0.965 48 H 0.012 0.988 49 H 0.259 0.741 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.070 0.930 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 -24.317 1.129 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C -0.049 4.049 4 C -0.150 4.150 5 C -0.214 4.214 6 C -0.135 4.135 7 C -0.181 4.181 8 C -0.015 4.015 9 N -0.334 5.334 10 C 0.273 3.727 11 O -0.436 6.436 12 C -0.038 4.038 13 H 0.114 0.886 14 N -0.335 5.335 15 C -0.135 4.135 16 C -0.005 4.005 17 C -0.559 4.559 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.012 4.012 26 C -0.161 4.161 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.161 0.839 44 H 0.144 0.856 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.030 0.970 49 H 0.068 0.932 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.089 0.911 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.069 -23.701 1.115 23.817 hybrid contribution -0.972 -0.138 0.297 1.026 sum -3.041 -23.839 1.412 24.074 Atomic orbital electron populations 1.21904 0.96169 1.01244 1.02138 1.22296 0.95696 0.96226 1.01685 1.20375 0.94989 0.94688 0.94862 1.21648 0.94454 1.00356 0.98530 1.21926 1.00274 1.00131 0.99053 1.20657 1.00070 0.95308 0.97452 1.20514 1.01498 0.94758 1.01327 1.21524 1.02167 0.99531 0.78326 1.48043 1.52655 1.24561 1.08133 1.22472 0.78406 0.84275 0.87572 1.90631 1.61963 1.76050 1.14953 1.21834 0.93768 0.91667 0.96534 0.88633 1.59026 1.12911 1.42125 1.19450 1.21682 0.95526 0.95318 1.00936 1.19014 0.96035 0.90932 0.94561 1.21318 0.96221 1.02916 1.35477 0.92953 1.24990 0.95110 0.98234 0.96009 1.69984 1.16286 1.27966 1.38928 0.86607 0.81740 0.82217 0.77833 1.19861 1.21080 1.21112 1.20831 0.94588 0.86374 0.99417 1.22768 1.01045 0.96311 0.95992 0.93234 0.92419 0.92497 0.92337 0.91858 0.92205 0.91790 0.92468 0.92506 0.93092 0.91242 0.92100 0.91649 0.90815 0.90635 0.88085 0.83908 0.85607 0.92777 0.92915 0.94698 0.96962 0.93178 0.91441 0.91429 0.91099 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.05 37.16 0.34 -0.73 16 2 C -0.12 -0.87 3.81 -25.70 -0.10 -0.97 16 3 C -0.05 -0.41 0.40 -154.67 -0.06 -0.47 16 4 C -0.11 -0.98 4.33 -26.71 -0.12 -1.09 16 5 C -0.16 -1.30 9.20 37.15 0.34 -0.96 16 6 C -0.10 -0.79 3.11 -29.72 -0.09 -0.88 16 7 C -0.14 -1.32 4.84 -30.69 -0.15 -1.47 16 8 C 0.11 1.17 5.38 -4.79 -0.03 1.15 16 9 N -0.60 -7.86 2.81 -175.40 -0.49 -8.35 16 10 C 0.49 7.88 6.91 -11.27 -0.08 7.81 16 11 O -0.56 -10.56 15.85 5.56 0.09 -10.47 16 12 C 0.08 1.32 2.29 -68.86 -0.16 1.17 16 13 H 0.10 1.55 6.70 -51.93 -0.35 1.20 16 14 N -0.81 -13.96 8.44 -5.65 -0.05 -14.01 16 15 C -0.10 -1.95 4.48 -26.73 -0.12 -2.07 16 16 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 17 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 21 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.11 1.30 4.85 -4.95 -0.02 1.28 16 26 C -0.12 -1.21 4.73 -25.04 -0.12 -1.33 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.41 6.68 -51.93 -0.35 0.06 16 29 H 0.06 0.38 6.73 -51.93 -0.35 0.03 16 30 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.06 0.46 6.34 -51.93 -0.33 0.13 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.65 6.49 -51.93 -0.34 0.31 16 34 H 0.06 0.52 6.36 -51.93 -0.33 0.19 16 35 H 0.06 0.42 6.16 -51.93 -0.32 0.10 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.55 5.21 -51.44 -0.27 0.29 16 38 H 0.06 0.45 8.07 -51.12 -0.41 0.04 16 39 H 0.06 0.54 8.23 -50.90 -0.42 0.12 16 40 H 0.07 0.74 5.83 -52.59 -0.31 0.43 16 41 H 0.08 0.77 8.13 -51.98 -0.42 0.34 16 42 H 0.10 1.26 5.09 -51.98 -0.26 0.99 16 43 H 0.35 6.13 8.58 -39.29 -0.34 5.79 16 44 H 0.33 5.04 9.06 -39.29 -0.36 4.69 16 45 H 0.05 1.03 7.07 -51.93 -0.37 0.66 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.03 0.97 7.75 -51.93 -0.40 0.56 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.07 0.92 7.39 -51.73 -0.38 0.54 16 51 H 0.07 0.67 6.49 -51.85 -0.34 0.34 16 52 H 0.07 0.63 6.44 -51.47 -0.33 0.30 16 53 H 0.07 0.80 6.07 -51.89 -0.31 0.48 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -31.53 383.80 -9.22 -40.75 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -9.36 Total: 7.01 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.91 Total: -11.31 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.20 Total: -48.42 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.53 -9.22 -40.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424189822.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.872 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds