Wall clock time and date at job start Fri Apr 10 2020 22:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.54960 * 109.47085 * 2 1 4 4 C 1.53055 * 106.73401 * 185.64878 * 3 2 1 5 5 C 1.52992 * 109.47348 * 302.45609 * 4 3 2 6 6 C 1.48860 * 107.19612 * 305.77249 * 3 2 1 7 7 C 1.51093 * 112.08775 * 192.77590 * 6 3 2 8 8 C 1.46717 * 115.78505 * 264.84097 * 7 6 3 9 9 N 1.50523 * 107.04631 * 62.55768 * 8 7 6 10 10 C 1.34146 * 120.80929 * 117.55490 * 9 8 7 11 11 O 1.21280 * 119.99556 * 179.97438 * 10 9 8 12 12 C 1.50697 * 120.00168 * 0.02562 * 10 9 8 13 13 H 1.08997 * 109.47225 * 320.00390 * 12 10 9 14 14 N 1.46899 * 109.47341 * 199.99489 * 12 10 9 15 15 C 1.53005 * 109.46828 * 79.99984 * 12 10 9 16 16 C 1.53002 * 109.46968 * 185.00121 * 15 12 10 17 17 C 1.50699 * 109.47227 * 179.97438 * 16 15 12 18 18 H 1.07994 * 120.00014 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99988 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99882 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99791 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47566 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47230 * 120.00226 * 21 19 17 24 24 H 1.48502 * 109.47181 * 239.99780 * 21 19 17 25 25 C 1.43104 * 118.00872 * 297.84789 * 9 8 7 26 26 C 1.54539 * 106.99974 * 68.38460 * 3 2 1 27 27 H 1.09002 * 109.46887 * 184.79161 * 1 2 3 28 28 H 1.09001 * 109.46858 * 304.78495 * 1 2 3 29 29 H 1.08998 * 109.47301 * 64.78364 * 1 2 3 30 30 H 1.08995 * 109.47074 * 240.00227 * 2 1 3 31 31 H 1.09000 * 109.47775 * 119.99984 * 2 1 3 32 32 H 1.09001 * 109.47293 * 62.46302 * 4 3 2 33 33 H 1.09005 * 109.47124 * 182.45478 * 4 3 2 34 34 H 1.08996 * 109.47317 * 297.95353 * 5 4 3 35 35 H 1.08997 * 109.47096 * 57.95330 * 5 4 3 36 36 H 1.09004 * 109.47271 * 177.95639 * 5 4 3 37 37 H 1.09854 * 110.07515 * 69.77361 * 6 3 2 38 38 H 1.10421 * 108.96732 * 313.52868 * 6 3 2 39 39 H 1.10788 * 107.01066 * 147.34238 * 7 6 3 40 40 H 1.07803 * 113.65995 * 30.96878 * 7 6 3 41 41 H 1.08908 * 110.01068 * 302.82725 * 8 7 6 42 42 H 1.08907 * 109.69036 * 181.71069 * 8 7 6 43 43 H 1.00898 * 111.00252 * 300.00724 * 14 12 10 44 44 H 1.00900 * 110.99531 * 63.95579 * 14 12 10 45 45 H 1.09003 * 109.47108 * 304.99880 * 15 12 10 46 46 H 1.08999 * 109.47448 * 64.99823 * 15 12 10 47 47 H 1.09003 * 109.47009 * 299.99819 * 16 15 12 48 48 H 1.08999 * 109.47279 * 59.99599 * 16 15 12 49 49 H 0.97001 * 119.99917 * 180.02562 * 20 19 17 50 50 H 1.09345 * 107.61635 * 211.64586 * 25 9 8 51 51 H 1.09138 * 108.87676 * 327.54451 * 25 9 8 52 52 H 1.09814 * 108.77359 * 356.48889 * 26 3 2 53 53 H 1.09062 * 109.48521 * 114.19634 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0465 1.4610 0.0000 4 6 3.5686 1.3903 -0.1443 5 6 4.1508 0.5540 0.9969 6 6 1.4095 2.1530 -1.1538 7 6 2.0604 3.4845 -1.4476 8 6 1.4182 4.6563 -0.8418 9 7 1.5040 4.4840 0.6511 10 6 2.1866 5.3582 1.4055 11 8 2.2457 5.2054 2.6072 12 6 2.8791 6.5308 0.7601 13 1 3.3390 6.2114 -0.1751 14 7 3.9155 7.0460 1.6647 15 6 1.8569 7.6331 0.4753 16 6 2.5342 8.7709 -0.2914 17 6 1.5273 9.8563 -0.5725 18 1 0.5066 9.7460 -0.2374 19 6 1.9095 10.9909 -1.2565 20 7 3.1526 11.1255 -1.6640 21 14 0.6616 12.3366 -1.6042 22 1 -0.6570 11.9457 -1.0443 23 1 1.1109 13.6035 -0.9730 24 1 0.5391 12.5310 -3.0713 25 6 0.8419 3.3586 1.2368 26 6 1.6839 2.0684 1.3739 27 1 -0.3633 -1.0241 0.0858 28 1 -0.3633 0.5863 0.8440 29 1 -0.3634 0.4378 -0.9297 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8221 0.9290 -1.0988 33 1 3.9844 2.3972 -0.1056 34 1 3.9286 1.0345 1.9496 35 1 3.7078 -0.4418 0.9802 36 1 5.2309 0.4733 0.8739 37 1 0.3358 2.2894 -0.9656 38 1 1.4888 1.5088 -2.0470 39 1 1.9978 3.6413 -2.5425 40 1 3.1108 3.5150 -1.2070 41 1 0.3766 4.7137 -1.1545 42 1 1.9471 5.5602 -1.1409 43 1 3.5141 7.3488 2.5394 44 1 4.6372 6.3574 1.8171 45 1 1.0415 7.2267 -0.1231 46 1 1.4617 8.0142 1.4169 47 1 3.3496 9.1773 0.3070 48 1 2.9294 8.3897 -1.2330 49 1 3.4216 11.9238 -2.1449 50 1 0.5103 3.6531 2.2363 51 1 -0.0523 3.1321 0.6534 52 1 1.1089 1.3287 1.9468 53 1 2.5976 2.2856 1.9283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424189822.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:04 Heat of formation + Delta-G solvation = -80.735333 kcal Electronic energy + Delta-G solvation = -27953.099302 eV Core-core repulsion = 24436.689003 eV Total energy + Delta-G solvation = -3516.410300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.78733 -40.05797 -36.89116 -36.87305 -34.83427 -33.71603 -32.73013 -31.94127 -31.35338 -28.52071 -27.85970 -26.33200 -25.39901 -23.67348 -23.57677 -22.81778 -21.88150 -20.06892 -18.81432 -18.50331 -18.16307 -17.34478 -16.99643 -16.51270 -16.41417 -16.09184 -15.64560 -15.41267 -15.36439 -15.11569 -14.76566 -14.56563 -14.25480 -14.09641 -13.94724 -13.71892 -13.43186 -13.07227 -13.00811 -12.85344 -12.80191 -12.51449 -12.49628 -12.33497 -12.29011 -12.10827 -11.97952 -11.82986 -11.70010 -11.67475 -11.50447 -11.20873 -11.05819 -11.01176 -10.89776 -10.76881 -10.48510 -9.67663 -9.59494 -8.12892 -6.22972 1.41875 1.43227 1.54138 1.56273 2.02468 2.45359 3.20197 3.39810 3.62213 3.68436 3.75768 3.87551 4.04222 4.11298 4.15128 4.22183 4.30699 4.31529 4.35091 4.42828 4.46363 4.59117 4.61985 4.69496 4.72758 4.77106 4.86987 4.87622 4.94952 4.97696 5.00556 5.07105 5.10571 5.18875 5.19842 5.24792 5.30703 5.33966 5.35823 5.40772 5.55796 5.57826 5.58368 5.66025 5.70998 5.84848 5.99172 6.09443 6.31073 6.35063 6.48832 6.95440 7.14823 7.45123 8.98462 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.021394 B = 0.003140 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.448364 B = 8915.784546 C = 9285.532591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.045 4.045 4 C -0.111 4.111 5 C -0.155 4.155 6 C -0.097 4.097 7 C -0.141 4.141 8 C 0.102 3.898 9 N -0.592 5.592 10 C 0.486 3.514 11 O -0.589 6.589 12 C 0.086 3.914 13 H 0.105 0.895 14 N -0.819 5.819 15 C -0.081 4.081 16 C 0.042 3.958 17 C -0.541 4.541 18 H 0.055 0.945 19 C 0.002 3.998 20 N -0.929 5.929 21 Si 0.959 3.041 22 H -0.264 1.264 23 H -0.282 1.282 24 H -0.276 1.276 25 C 0.110 3.890 26 C -0.115 4.115 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.344 0.656 44 H 0.344 0.656 45 H 0.068 0.932 46 H 0.038 0.962 47 H 0.003 0.997 48 H -0.004 1.004 49 H 0.262 0.738 50 H 0.044 0.956 51 H 0.091 0.909 52 H 0.082 0.918 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 -25.830 -0.113 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.045 4.045 4 C -0.148 4.148 5 C -0.212 4.212 6 C -0.134 4.134 7 C -0.179 4.179 8 C -0.018 4.018 9 N -0.324 5.324 10 C 0.273 3.727 11 O -0.470 6.470 12 C -0.029 4.029 13 H 0.123 0.877 14 N -0.347 5.347 15 C -0.119 4.119 16 C 0.005 3.995 17 C -0.580 4.580 18 H 0.073 0.927 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.784 3.216 22 H -0.188 1.188 23 H -0.208 1.208 24 H -0.202 1.202 25 C -0.014 4.014 26 C -0.153 4.153 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.157 0.843 44 H 0.157 0.843 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.022 0.978 48 H 0.014 0.986 49 H 0.071 0.929 50 H 0.063 0.937 51 H 0.109 0.891 52 H 0.101 0.899 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.711 -25.250 -0.153 25.521 hybrid contribution -0.442 0.305 0.668 0.857 sum -4.153 -24.945 0.515 25.294 Atomic orbital electron populations 1.21901 0.95666 1.01653 1.02189 1.22242 0.96053 0.95050 1.02042 1.20327 0.94751 0.95567 0.93891 1.21630 0.94730 0.99388 0.99090 1.21906 1.00470 1.00547 0.98262 1.20664 1.00147 0.94687 0.97870 1.20482 1.00747 0.94626 1.02066 1.21715 1.03294 0.99981 0.76810 1.48096 1.51092 1.24155 1.09011 1.22117 0.78783 0.84612 0.87151 1.90617 1.63307 1.76921 1.16169 1.21614 0.93116 0.91122 0.97066 0.87699 1.59011 1.13447 1.42936 1.19326 1.21404 0.96234 0.94708 0.99563 1.18805 0.94949 0.92034 0.93745 1.21739 0.96810 1.03942 1.35469 0.92693 1.25884 0.97092 1.00813 0.95750 1.70110 1.18293 1.28876 1.39654 0.85496 0.79360 0.78772 0.77978 1.18831 1.20829 1.20168 1.20988 0.95585 0.86335 0.98490 1.22703 0.99790 0.95691 0.97142 0.92643 0.92838 0.92025 0.91565 0.91944 0.91202 0.93698 0.93803 0.91300 0.93014 0.90578 0.90505 0.90016 0.91802 0.88888 0.89571 0.84277 0.84305 0.91369 0.94289 0.97810 0.98601 0.92944 0.93746 0.89063 0.89934 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.05 71.98 0.65 -1.02 16 2 C -0.12 -1.35 3.81 31.26 0.12 -1.23 16 3 C -0.05 -0.66 0.40 -52.28 -0.02 -0.68 16 4 C -0.11 -1.78 4.33 30.61 0.13 -1.64 16 5 C -0.15 -2.42 9.20 71.98 0.66 -1.76 16 6 C -0.10 -1.28 3.11 28.66 0.09 -1.19 16 7 C -0.14 -2.31 4.84 28.03 0.14 -2.18 16 8 C 0.10 2.11 5.38 83.65 0.45 2.56 16 9 N -0.59 -15.07 2.81 -827.60 -2.33 -17.40 16 10 C 0.49 15.92 6.91 87.75 0.61 16.53 16 11 O -0.59 -22.78 15.85 -3.03 -0.05 -22.82 16 12 C 0.09 2.99 2.29 44.17 0.10 3.09 16 13 H 0.11 3.43 6.70 -2.39 -0.02 3.41 16 14 N -0.82 -29.17 8.44 -171.80 -1.45 -30.62 16 15 C -0.08 -3.32 4.48 30.60 0.14 -3.18 16 16 C 0.04 2.18 4.86 29.85 0.15 2.33 16 17 C -0.54 -30.73 9.11 25.60 0.23 -30.49 16 18 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 19 C 0.00 0.14 5.46 84.66 0.46 0.60 16 20 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 21 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 22 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 C 0.11 2.43 4.85 87.58 0.42 2.86 16 26 C -0.11 -2.15 4.73 31.69 0.15 -2.00 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.62 6.68 -2.39 -0.02 0.60 16 29 H 0.06 0.61 6.73 -2.39 -0.02 0.59 16 30 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 31 H 0.06 0.75 6.34 -2.39 -0.02 0.74 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 0.89 6.49 -2.38 -0.02 0.88 16 34 H 0.04 0.80 6.36 -2.39 -0.02 0.78 16 35 H 0.07 0.90 6.16 -2.39 -0.01 0.88 16 36 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.08 0.94 5.21 -1.93 -0.01 0.93 16 38 H 0.08 0.84 8.07 -1.62 -0.01 0.83 16 39 H 0.08 1.12 8.23 -1.42 -0.01 1.11 16 40 H 0.06 1.20 5.83 -3.01 -0.02 1.18 16 41 H 0.09 1.64 8.13 -2.44 -0.02 1.62 16 42 H 0.09 2.07 5.09 -2.44 -0.01 2.06 16 43 H 0.34 12.59 8.58 -89.70 -0.77 11.82 16 44 H 0.34 10.71 9.06 -89.69 -0.81 9.90 16 45 H 0.07 2.58 7.07 -2.39 -0.02 2.56 16 46 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.00 0.20 7.75 -2.39 -0.02 0.18 16 48 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 49 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 50 H 0.04 1.20 7.39 -2.20 -0.02 1.19 16 51 H 0.09 1.59 6.49 -2.31 -0.02 1.58 16 52 H 0.08 1.35 6.44 -1.95 -0.01 1.34 16 53 H 0.04 1.06 6.07 -2.35 -0.01 1.04 16 Total: -1.00 -68.42 383.80 2.31 -66.11 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: -0.66 Total: 31.94 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 4.48 Total: -17.39 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -3.49 Total: -104.23 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.82 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -68.42 2.31 -66.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424189822.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.621 kcal (2) G-P(sol) polarization free energy of solvation -68.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds