Wall clock time and date at job start Fri Apr 10 2020 22:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47457 * 2 1 4 4 C 1.53001 * 109.47384 * 120.00214 * 2 1 3 5 5 C 1.52997 * 109.47452 * 174.99804 * 4 2 1 6 6 C 1.52999 * 109.47409 * 174.99983 * 5 4 2 7 7 C 1.52995 * 109.47357 * 185.82093 * 6 5 4 8 8 C 1.53004 * 109.46851 * 61.58193 * 7 6 5 9 9 C 1.53004 * 109.47336 * 181.57731 * 7 6 5 10 10 N 1.46504 * 109.47068 * 295.00069 * 5 4 2 11 11 C 1.34776 * 119.99651 * 85.00043 * 10 5 4 12 12 O 1.21585 * 120.00611 * 6.57168 * 11 10 5 13 13 N 1.34782 * 119.99756 * 186.57142 * 11 10 5 14 14 C 1.46490 * 119.99970 * 175.69063 * 13 11 10 15 15 C 1.53005 * 109.47154 * 185.08358 * 14 13 11 16 16 C 1.50699 * 115.54938 * 57.40697 * 15 14 13 17 17 H 1.07997 * 120.00331 * 267.72763 * 16 15 14 18 18 C 1.37887 * 119.99823 * 87.72683 * 16 15 14 19 19 N 1.31515 * 119.99853 * 179.36703 * 18 16 15 20 20 Si 1.86793 * 120.00180 * 359.36054 * 18 16 15 21 21 H 1.48499 * 109.47125 * 91.68292 * 20 18 16 22 22 H 1.48491 * 109.47524 * 211.68623 * 20 18 16 23 23 H 1.48505 * 109.47164 * 331.68404 * 20 18 16 24 24 C 1.52997 * 117.50018 * 271.74081 * 15 14 13 25 25 C 1.52994 * 117.50081 * 203.07971 * 15 14 13 26 26 H 1.09002 * 109.46762 * 299.99632 * 1 2 3 27 27 H 1.09000 * 109.47214 * 59.99575 * 1 2 3 28 28 H 1.08994 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47275 * 240.00266 * 2 1 3 30 30 H 1.08997 * 109.46978 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.46834 * 300.00236 * 3 2 1 32 32 H 1.09001 * 109.46661 * 59.99889 * 3 2 1 33 33 H 1.09007 * 109.46991 * 54.99536 * 4 2 1 34 34 H 1.09002 * 109.47293 * 295.00262 * 4 2 1 35 35 H 1.08995 * 109.47107 * 55.00079 * 5 4 2 36 36 H 1.09000 * 109.47230 * 305.82883 * 6 5 4 37 37 H 1.09006 * 109.46889 * 65.82443 * 6 5 4 38 38 H 1.08993 * 109.47301 * 301.58097 * 7 6 5 39 39 H 1.09002 * 109.46990 * 59.99909 * 8 7 6 40 40 H 1.08998 * 109.47371 * 179.97438 * 8 7 6 41 41 H 1.09001 * 109.46812 * 299.99812 * 8 7 6 42 42 H 1.09004 * 109.46856 * 64.80499 * 9 7 6 43 43 H 1.08995 * 109.47562 * 184.81450 * 9 7 6 44 44 H 1.09003 * 109.46886 * 304.81596 * 9 7 6 45 45 H 0.96994 * 119.99994 * 264.99971 * 10 5 4 46 46 H 0.97003 * 119.99585 * 355.41542 * 13 11 10 47 47 H 1.09001 * 109.47358 * 305.08232 * 14 13 11 48 48 H 1.09002 * 109.47702 * 65.08536 * 14 13 11 49 49 H 0.96997 * 120.00198 * 180.02562 * 19 18 16 50 50 H 1.09003 * 117.50064 * 359.97438 * 24 15 14 51 51 H 1.09001 * 117.50010 * 145.02093 * 24 15 14 52 52 H 1.09002 * 117.50035 * 214.97766 * 25 15 14 53 53 H 1.09000 * 117.49885 * 359.97274 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 6 4.0852 -1.4395 2.4917 7 6 5.6150 -1.4159 2.4907 8 6 6.1026 0.0322 2.4118 9 6 6.1359 -2.0600 3.7771 10 7 3.9479 -1.6873 0.0625 11 6 4.0652 -1.1630 -1.1736 12 8 3.9709 0.0383 -1.3360 13 7 4.2869 -1.9704 -2.2298 14 6 4.3203 -1.4126 -3.5839 15 6 4.4602 -2.5480 -4.5999 16 6 3.3849 -3.6026 -4.5483 17 1 3.5237 -4.4861 -3.9429 18 6 2.2238 -3.4394 -5.2739 19 7 1.2908 -4.3656 -5.2386 20 14 1.9760 -1.9029 -6.3068 21 1 2.4673 -2.1493 -7.6863 22 1 0.5313 -1.5626 -6.3492 23 1 2.7327 -0.7752 -5.7059 24 6 5.8758 -2.9998 -4.9639 25 6 5.0443 -2.2013 -5.9708 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -1.7199 1.2951 34 1 1.7517 -0.1584 2.1370 35 1 3.9954 0.1610 1.0527 36 1 3.7134 -0.8602 3.3368 37 1 3.7378 -2.4693 2.5762 38 1 5.9864 -1.9718 1.6299 39 1 5.7312 0.5881 3.2727 40 1 7.1925 0.0491 2.4115 41 1 5.7315 0.4910 1.4953 42 1 5.8608 -3.1146 3.7926 43 1 7.2212 -1.9669 3.8165 44 1 5.6966 -1.5573 4.6388 45 1 4.1172 -2.6313 0.2070 46 1 4.4284 -2.9202 -2.0928 47 1 3.3966 -0.8661 -3.7746 48 1 5.1691 -0.7351 -3.6771 49 1 0.4741 -4.2510 -5.7493 50 1 6.7076 -2.4880 -4.4799 51 1 6.0294 -4.0598 -5.1664 52 1 4.6512 -2.7362 -6.8353 53 1 5.3285 -1.1642 -6.1491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430560199.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:08 Heat of formation + Delta-G solvation = -39.577143 kcal Electronic energy + Delta-G solvation = -27847.067000 eV Core-core repulsion = 24332.441453 eV Total energy + Delta-G solvation = -3514.625547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.98831 -37.80280 -36.80213 -35.68275 -33.57913 -33.12730 -32.11511 -29.90039 -27.32150 -26.82117 -26.42850 -26.25274 -25.04565 -21.99915 -21.67925 -20.41017 -19.91072 -19.47425 -19.26267 -17.71018 -16.46502 -15.95841 -15.55578 -15.22217 -14.93324 -14.47210 -14.17121 -14.12899 -14.00155 -13.63512 -13.45711 -13.07802 -12.82220 -12.62510 -12.42625 -12.29754 -12.27061 -12.19701 -11.92737 -11.90722 -11.62911 -11.43029 -11.15221 -11.10845 -10.75552 -10.74310 -10.73282 -10.49469 -10.33820 -10.20862 -10.15727 -10.03316 -9.67049 -9.46078 -9.14589 -8.69065 -8.61027 -8.56687 -8.03534 -6.14957 -4.19087 3.24144 3.29974 3.40123 3.46417 3.83140 4.41315 4.51634 4.69311 4.77096 4.80983 5.04680 5.14216 5.17337 5.20912 5.24694 5.35578 5.45294 5.53853 5.55468 5.65545 5.67746 5.72971 5.74951 5.84462 5.85855 5.94364 5.97143 6.03388 6.04487 6.09095 6.09402 6.13568 6.21005 6.25547 6.31008 6.31897 6.35944 6.43968 6.54399 6.55286 6.71864 6.78666 6.86141 6.95542 7.02101 7.10077 7.32356 7.56130 7.69814 8.41805 8.67519 8.84682 9.24026 9.48719 10.96338 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.004335 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.767711 B = 6458.206548 C = 7452.985188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.125 4.125 5 C 0.159 3.841 6 C -0.122 4.122 7 C -0.096 4.096 8 C -0.150 4.150 9 C -0.147 4.147 10 N -0.745 5.745 11 C 0.701 3.299 12 O -0.596 6.596 13 N -0.721 5.721 14 C 0.178 3.822 15 C -0.015 4.015 16 C -0.487 4.487 17 H 0.077 0.923 18 C 0.081 3.919 19 N -0.896 5.896 20 Si 0.878 3.122 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.256 1.256 24 C -0.179 4.179 25 C -0.194 4.194 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.392 0.608 46 H 0.398 0.602 47 H 0.060 0.940 48 H 0.038 0.962 49 H 0.265 0.735 50 H 0.072 0.928 51 H 0.086 0.914 52 H 0.089 0.911 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.946 6.121 15.870 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.194 4.194 4 C -0.164 4.164 5 C 0.053 3.947 6 C -0.160 4.160 7 C -0.114 4.114 8 C -0.208 4.208 9 C -0.204 4.204 10 N -0.401 5.401 11 C 0.401 3.599 12 O -0.476 6.476 13 N -0.373 5.373 14 C 0.053 3.947 15 C -0.016 4.016 16 C -0.524 4.524 17 H 0.095 0.905 18 C -0.122 4.122 19 N -0.533 5.533 20 Si 0.706 3.294 21 H -0.206 1.206 22 H -0.222 1.222 23 H -0.180 1.180 24 C -0.216 4.216 25 C -0.232 4.232 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.225 0.775 46 H 0.232 0.768 47 H 0.079 0.921 48 H 0.057 0.943 49 H 0.074 0.926 50 H 0.091 0.909 51 H 0.105 0.895 52 H 0.107 0.893 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.631 7.182 15.625 18.095 hybrid contribution -0.275 -0.248 -0.619 0.721 sum 5.356 6.934 15.006 17.377 Atomic orbital electron populations 1.21849 0.96335 1.01192 1.00951 1.21094 0.94360 0.97039 0.98803 1.21817 1.02907 0.95136 0.99511 1.22094 0.95514 1.00576 0.98243 1.20961 0.93975 0.95530 0.84207 1.21952 0.95348 1.01605 0.97121 1.21083 0.95071 0.96928 0.98341 1.21906 1.00682 0.96078 1.02091 1.21848 1.00774 1.00415 0.97380 1.45153 1.76003 1.12187 1.06785 1.15982 0.77833 0.85627 0.80460 1.90843 1.59032 1.12996 1.84729 1.44985 1.75829 1.11065 1.05454 1.20896 0.99830 0.94422 0.79518 1.19643 0.93537 0.96334 0.92108 1.20140 0.98926 1.03995 1.29374 0.90522 1.24945 0.95417 0.95903 0.95917 1.69882 1.07901 1.33908 1.41580 0.86872 0.76873 0.84744 0.80884 1.20554 1.22161 1.18002 1.22857 0.94763 0.99487 1.04531 1.22931 1.06310 0.99001 0.94926 0.93484 0.93064 0.93124 0.90067 0.90543 0.93743 0.94721 0.92083 0.91825 0.88661 0.90723 0.91495 0.90928 0.92956 0.93077 0.91891 0.92811 0.92875 0.92882 0.77501 0.76765 0.92130 0.94348 0.92557 0.90930 0.89530 0.89257 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.19 37.16 0.34 -1.70 16 2 C -0.09 -1.43 2.38 -90.62 -0.22 -1.65 16 3 C -0.14 -2.04 8.14 37.16 0.30 -1.74 16 4 C -0.13 -1.54 4.36 -26.73 -0.12 -1.66 16 5 C 0.16 1.87 1.99 -67.93 -0.14 1.74 16 6 C -0.12 -1.10 4.26 -26.73 -0.11 -1.22 16 7 C -0.10 -0.87 2.87 -90.62 -0.26 -1.13 16 8 C -0.15 -1.44 8.89 37.16 0.33 -1.11 16 9 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 10 N -0.75 -9.99 4.50 -58.68 -0.26 -10.25 16 11 C 0.70 12.24 6.85 -86.91 -0.60 11.65 16 12 O -0.60 -11.89 11.83 5.29 0.06 -11.83 16 13 N -0.72 -13.30 5.38 -65.23 -0.35 -13.65 16 14 C 0.18 3.72 5.29 -4.04 -0.02 3.70 16 15 C -0.01 -0.33 0.91 -155.66 -0.14 -0.47 16 16 C -0.49 -12.64 8.96 -34.44 -0.31 -12.95 16 17 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 18 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 19 N -0.90 -26.40 13.96 55.43 0.77 -25.62 16 20 Si 0.88 21.54 24.87 -169.99 -4.23 17.31 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.26 -6.05 5.65 56.52 0.32 -5.73 16 24 C -0.18 -3.43 9.94 -26.70 -0.27 -3.69 16 25 C -0.19 -3.98 7.54 -26.70 -0.20 -4.18 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.53 5.34 -51.93 -0.28 1.25 16 30 H 0.08 1.24 4.70 -51.93 -0.24 1.00 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.28 3.89 -51.93 -0.20 1.08 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.74 7.74 -51.93 -0.40 0.33 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.72 6.34 -51.93 -0.33 0.39 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.39 4.53 8.62 -40.82 -0.35 4.18 16 46 H 0.40 6.94 8.25 -40.82 -0.34 6.61 16 47 H 0.06 1.42 6.62 -51.93 -0.34 1.08 16 48 H 0.04 0.78 8.11 -51.93 -0.42 0.35 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 51 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 52 H 0.09 1.93 7.15 -51.93 -0.37 1.56 16 53 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 398.15 15.07 6.00 6.00 Total: -1.00 -29.24 398.15 -9.27 -38.51 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -10.11 Total: 12.60 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -1.16 Total: -13.07 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.16 Total: -49.52 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.06 Total: -11.83 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.23 Total: 17.31 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.24 -9.27 -38.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430560199.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.065 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds