Wall clock time and date at job start Fri Apr 10 2020 22:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47457 * 2 1 4 4 C 1.53001 * 109.47384 * 120.00214 * 2 1 3 5 5 C 1.52997 * 109.47452 * 174.99804 * 4 2 1 6 6 C 1.52999 * 109.47409 * 174.99983 * 5 4 2 7 7 C 1.52995 * 109.47357 * 185.82093 * 6 5 4 8 8 C 1.53004 * 109.46851 * 61.58193 * 7 6 5 9 9 C 1.53004 * 109.47336 * 181.57731 * 7 6 5 10 10 N 1.46504 * 109.47068 * 295.00069 * 5 4 2 11 11 C 1.34776 * 119.99651 * 85.00043 * 10 5 4 12 12 O 1.21585 * 120.00611 * 6.57168 * 11 10 5 13 13 N 1.34782 * 119.99756 * 186.57142 * 11 10 5 14 14 C 1.46490 * 119.99970 * 175.69063 * 13 11 10 15 15 C 1.53005 * 109.47154 * 185.08358 * 14 13 11 16 16 C 1.50699 * 115.54938 * 57.40697 * 15 14 13 17 17 H 1.07997 * 120.00331 * 267.72763 * 16 15 14 18 18 C 1.37887 * 119.99823 * 87.72683 * 16 15 14 19 19 N 1.31515 * 119.99853 * 179.36703 * 18 16 15 20 20 Si 1.86793 * 120.00180 * 359.36054 * 18 16 15 21 21 H 1.48499 * 109.47125 * 91.68292 * 20 18 16 22 22 H 1.48491 * 109.47524 * 211.68623 * 20 18 16 23 23 H 1.48505 * 109.47164 * 331.68404 * 20 18 16 24 24 C 1.52997 * 117.50018 * 271.74081 * 15 14 13 25 25 C 1.52994 * 117.50081 * 203.07971 * 15 14 13 26 26 H 1.09002 * 109.46762 * 299.99632 * 1 2 3 27 27 H 1.09000 * 109.47214 * 59.99575 * 1 2 3 28 28 H 1.08994 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47275 * 240.00266 * 2 1 3 30 30 H 1.08997 * 109.46978 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.46834 * 300.00236 * 3 2 1 32 32 H 1.09001 * 109.46661 * 59.99889 * 3 2 1 33 33 H 1.09007 * 109.46991 * 54.99536 * 4 2 1 34 34 H 1.09002 * 109.47293 * 295.00262 * 4 2 1 35 35 H 1.08995 * 109.47107 * 55.00079 * 5 4 2 36 36 H 1.09000 * 109.47230 * 305.82883 * 6 5 4 37 37 H 1.09006 * 109.46889 * 65.82443 * 6 5 4 38 38 H 1.08993 * 109.47301 * 301.58097 * 7 6 5 39 39 H 1.09002 * 109.46990 * 59.99909 * 8 7 6 40 40 H 1.08998 * 109.47371 * 179.97438 * 8 7 6 41 41 H 1.09001 * 109.46812 * 299.99812 * 8 7 6 42 42 H 1.09004 * 109.46856 * 64.80499 * 9 7 6 43 43 H 1.08995 * 109.47562 * 184.81450 * 9 7 6 44 44 H 1.09003 * 109.46886 * 304.81596 * 9 7 6 45 45 H 0.96994 * 119.99994 * 264.99971 * 10 5 4 46 46 H 0.97003 * 119.99585 * 355.41542 * 13 11 10 47 47 H 1.09001 * 109.47358 * 305.08232 * 14 13 11 48 48 H 1.09002 * 109.47702 * 65.08536 * 14 13 11 49 49 H 0.96997 * 120.00198 * 180.02562 * 19 18 16 50 50 H 1.09003 * 117.50064 * 359.97438 * 24 15 14 51 51 H 1.09001 * 117.50010 * 145.02093 * 24 15 14 52 52 H 1.09002 * 117.50035 * 214.97766 * 25 15 14 53 53 H 1.09000 * 117.49885 * 359.97274 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 6 4.0852 -1.4395 2.4917 7 6 5.6150 -1.4159 2.4907 8 6 6.1026 0.0322 2.4118 9 6 6.1359 -2.0600 3.7771 10 7 3.9479 -1.6873 0.0625 11 6 4.0652 -1.1630 -1.1736 12 8 3.9709 0.0383 -1.3360 13 7 4.2869 -1.9704 -2.2298 14 6 4.3203 -1.4126 -3.5839 15 6 4.4602 -2.5480 -4.5999 16 6 3.3849 -3.6026 -4.5483 17 1 3.5237 -4.4861 -3.9429 18 6 2.2238 -3.4394 -5.2739 19 7 1.2908 -4.3656 -5.2386 20 14 1.9760 -1.9029 -6.3068 21 1 2.4673 -2.1493 -7.6863 22 1 0.5313 -1.5626 -6.3492 23 1 2.7327 -0.7752 -5.7059 24 6 5.8758 -2.9998 -4.9639 25 6 5.0443 -2.2013 -5.9708 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -1.7199 1.2951 34 1 1.7517 -0.1584 2.1370 35 1 3.9954 0.1610 1.0527 36 1 3.7134 -0.8602 3.3368 37 1 3.7378 -2.4693 2.5762 38 1 5.9864 -1.9718 1.6299 39 1 5.7312 0.5881 3.2727 40 1 7.1925 0.0491 2.4115 41 1 5.7315 0.4910 1.4953 42 1 5.8608 -3.1146 3.7926 43 1 7.2212 -1.9669 3.8165 44 1 5.6966 -1.5573 4.6388 45 1 4.1172 -2.6313 0.2070 46 1 4.4284 -2.9202 -2.0928 47 1 3.3966 -0.8661 -3.7746 48 1 5.1691 -0.7351 -3.6771 49 1 0.4741 -4.2510 -5.7493 50 1 6.7076 -2.4880 -4.4799 51 1 6.0294 -4.0598 -5.1664 52 1 4.6512 -2.7362 -6.8353 53 1 5.3285 -1.1642 -6.1491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430560199.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:07 Heat of formation + Delta-G solvation = -56.900514 kcal Electronic energy + Delta-G solvation = -27847.818198 eV Core-core repulsion = 24332.441453 eV Total energy + Delta-G solvation = -3515.376745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25983 -39.18771 -38.17020 -36.68830 -34.89960 -34.47739 -34.17734 -30.96969 -28.22308 -28.06399 -27.90536 -27.16524 -26.86151 -23.38062 -22.94837 -21.65894 -21.11307 -20.87411 -20.44369 -19.17319 -18.25190 -17.23322 -16.91573 -16.80803 -16.08975 -15.61398 -15.50972 -15.46714 -15.09791 -14.98464 -14.75763 -14.51734 -14.40510 -14.14883 -13.80871 -13.44319 -13.18793 -13.11739 -13.05751 -12.97624 -12.94044 -12.63079 -12.48832 -12.42166 -12.17856 -12.06583 -11.98131 -11.65735 -11.55887 -11.48949 -11.41350 -11.28189 -11.04910 -11.01000 -10.92002 -10.63025 -10.34162 -9.96643 -9.46153 -8.29339 -6.34130 1.31741 1.38577 1.48680 1.95658 2.36291 2.45163 3.06901 3.17717 3.59730 3.70098 3.98093 4.07448 4.08129 4.12522 4.18393 4.24899 4.38607 4.42585 4.46104 4.56932 4.60727 4.67298 4.76972 4.81883 4.83413 4.85925 4.87227 4.89379 4.92587 4.95668 5.01008 5.05436 5.08971 5.10917 5.15119 5.17852 5.23850 5.32081 5.37910 5.43320 5.49862 5.51461 5.54246 5.56618 5.66490 5.71055 5.83158 5.86774 6.26753 6.30670 6.73484 7.34273 7.36061 7.86376 8.85194 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.004335 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.767711 B = 6458.206548 C = 7452.985188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C -0.128 4.128 4 C -0.120 4.120 5 C 0.158 3.842 6 C -0.113 4.113 7 C -0.094 4.094 8 C -0.148 4.148 9 C -0.143 4.143 10 N -0.731 5.731 11 C 0.698 3.302 12 O -0.621 6.621 13 N -0.724 5.724 14 C 0.191 3.809 15 C -0.039 4.039 16 C -0.471 4.471 17 H 0.046 0.954 18 C 0.030 3.970 19 N -0.943 5.943 20 Si 0.925 3.075 21 H -0.268 1.268 22 H -0.306 1.306 23 H -0.243 1.243 24 C -0.152 4.152 25 C -0.194 4.194 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.039 0.961 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.402 0.598 46 H 0.402 0.598 47 H 0.029 0.971 48 H 0.050 0.950 49 H 0.263 0.737 50 H 0.102 0.898 51 H 0.085 0.915 52 H 0.077 0.923 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.250 6.965 17.786 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.185 4.185 4 C -0.159 4.159 5 C 0.053 3.947 6 C -0.151 4.151 7 C -0.113 4.113 8 C -0.205 4.205 9 C -0.200 4.200 10 N -0.387 5.387 11 C 0.399 3.601 12 O -0.503 6.503 13 N -0.378 5.378 14 C 0.065 3.935 15 C -0.040 4.040 16 C -0.508 4.508 17 H 0.064 0.936 18 C -0.168 4.168 19 N -0.583 5.583 20 Si 0.752 3.248 21 H -0.193 1.193 22 H -0.233 1.233 23 H -0.167 1.167 24 C -0.189 4.189 25 C -0.232 4.232 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.237 0.763 46 H 0.237 0.763 47 H 0.047 0.953 48 H 0.068 0.932 49 H 0.072 0.928 50 H 0.120 0.880 51 H 0.104 0.896 52 H 0.096 0.904 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.965 8.013 17.571 20.529 hybrid contribution -0.641 -0.537 -1.147 1.420 sum 6.324 7.475 16.424 19.121 Atomic orbital electron populations 1.21823 0.95555 1.01140 1.01531 1.21061 0.95069 0.96964 0.98484 1.21719 1.01878 0.95177 0.99768 1.22065 0.95521 1.00617 0.97668 1.21095 0.93832 0.94941 0.84789 1.21910 0.95208 1.02266 0.95701 1.21057 0.95076 0.96452 0.98701 1.21876 1.00750 0.96482 1.01405 1.21804 1.00850 1.00636 0.96717 1.45095 1.74781 1.12936 1.05871 1.16114 0.77555 0.85196 0.81260 1.90826 1.60059 1.14153 1.85278 1.44910 1.76446 1.11318 1.05091 1.20583 0.98651 0.93857 0.80380 1.19494 0.94331 0.96279 0.93890 1.20299 0.99638 1.03691 1.27217 0.93551 1.25621 0.95543 0.98168 0.97509 1.70005 1.08715 1.36026 1.43580 0.86105 0.76212 0.82340 0.80173 1.19320 1.23343 1.16657 1.22879 0.93689 0.99675 1.02614 1.22992 1.06087 1.00464 0.93673 0.90963 0.94408 0.93483 0.94325 0.91991 0.95640 0.92158 0.91928 0.89257 0.90076 0.88882 0.90419 0.92280 0.91735 0.92979 0.94195 0.92336 0.92816 0.91922 0.76300 0.76320 0.95277 0.93161 0.92831 0.87988 0.89648 0.90443 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.19 71.98 0.66 -3.25 16 2 C -0.10 -2.91 2.38 -10.79 -0.03 -2.93 16 3 C -0.13 -3.79 8.14 71.98 0.59 -3.20 16 4 C -0.12 -2.73 4.36 30.59 0.13 -2.60 16 5 C 0.16 3.51 1.99 44.99 0.09 3.60 16 6 C -0.11 -1.73 4.26 30.59 0.13 -1.60 16 7 C -0.09 -1.51 2.87 -10.79 -0.03 -1.54 16 8 C -0.15 -2.60 8.89 71.98 0.64 -1.96 16 9 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 10 N -0.73 -19.18 4.50 -457.82 -2.06 -21.24 16 11 C 0.70 24.53 6.85 179.05 1.23 25.76 16 12 O -0.62 -25.19 11.83 -3.98 -0.05 -25.24 16 13 N -0.72 -26.77 5.38 -478.54 -2.57 -29.35 16 14 C 0.19 7.89 5.29 86.38 0.46 8.35 16 15 C -0.04 -1.66 0.91 -52.93 -0.05 -1.71 16 16 C -0.47 -24.81 8.96 25.60 0.23 -24.58 16 17 H 0.05 2.67 8.06 -2.91 -0.02 2.65 16 18 C 0.03 1.67 5.47 84.66 0.46 2.13 16 19 N -0.94 -57.40 13.96 21.45 0.30 -57.11 16 20 Si 0.93 44.89 24.87 68.60 1.71 46.60 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.31 -15.28 7.11 99.48 0.71 -14.58 16 23 H -0.24 -11.20 5.65 99.48 0.56 -10.64 16 24 C -0.15 -5.43 9.94 30.62 0.30 -5.12 16 25 C -0.19 -7.57 7.54 30.62 0.23 -7.33 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.49 5.34 -2.39 -0.01 1.48 16 30 H 0.06 2.02 4.70 -2.39 -0.01 2.01 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 2.12 3.89 -2.39 -0.01 2.11 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.06 1.11 7.74 -2.39 -0.02 1.09 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.04 0.89 6.34 -2.39 -0.02 0.87 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.40 8.92 8.62 -92.71 -0.80 8.12 16 46 H 0.40 14.04 8.25 -92.71 -0.76 13.27 16 47 H 0.03 1.38 6.62 -2.39 -0.02 1.36 16 48 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16 49 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 50 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 51 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 52 H 0.08 3.21 7.15 -2.39 -0.02 3.19 16 53 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -65.39 398.15 2.20 -63.18 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -0.83 Total: 40.32 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 5.71 Total: -17.17 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -4.33 Total: -107.69 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.05 Total: -25.24 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.71 Total: 46.60 kcal Total: -65.39 2.20 -63.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430560199.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.281 kcal (2) G-P(sol) polarization free energy of solvation -65.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds