Wall clock time and date at job start Fri Apr 10 2020 22:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.46955 * 2 1 4 4 C 1.53005 * 109.46836 * 119.99513 * 2 1 3 5 5 C 1.53005 * 109.46977 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46977 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47222 * 59.99875 * 6 5 4 8 8 N 1.46509 * 109.47017 * 59.99903 * 7 6 5 9 9 C 1.46500 * 119.99772 * 239.23570 * 8 7 6 10 10 C 1.34774 * 119.99910 * 59.23418 * 8 7 6 11 11 O 1.21586 * 119.99879 * 359.97438 * 10 8 7 12 12 N 1.34780 * 119.99799 * 180.02562 * 10 8 7 13 13 C 1.46494 * 119.99790 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.46912 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.46877 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46852 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99878 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99745 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00073 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99779 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46978 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.46913 * 120.00255 * 20 18 16 23 23 H 1.48495 * 109.46941 * 240.00465 * 20 18 16 24 24 C 1.52998 * 109.47074 * 300.00410 * 7 6 5 25 25 C 1.52996 * 109.47833 * 59.99651 * 24 7 6 26 26 H 1.09005 * 109.47199 * 300.00523 * 1 2 3 27 27 H 1.08997 * 109.47211 * 60.00356 * 1 2 3 28 28 H 1.09003 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47509 * 239.99457 * 2 1 3 30 30 H 1.09006 * 109.47325 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47076 * 299.99288 * 3 2 1 32 32 H 1.08996 * 109.47671 * 59.99894 * 3 2 1 33 33 H 1.09005 * 109.47196 * 299.99965 * 4 2 1 34 34 H 1.08996 * 109.46778 * 299.99921 * 5 4 2 35 35 H 1.08995 * 109.47339 * 60.00098 * 5 4 2 36 36 H 1.08992 * 109.47026 * 300.00033 * 6 5 4 37 37 H 1.08998 * 109.46635 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.47141 * 179.97438 * 7 6 5 39 39 H 1.08998 * 109.47212 * 95.92929 * 9 8 7 40 40 H 1.09003 * 109.46749 * 215.92811 * 9 8 7 41 41 H 1.09000 * 109.47331 * 335.92955 * 9 8 7 42 42 H 0.97003 * 120.00035 * 359.97438 * 12 10 8 43 43 H 1.09003 * 109.47189 * 299.99601 * 13 12 10 44 44 H 1.08994 * 109.47397 * 60.00181 * 13 12 10 45 45 H 1.09003 * 109.46818 * 299.99767 * 14 13 12 46 46 H 1.08994 * 109.46991 * 59.99871 * 14 13 12 47 47 H 1.09003 * 109.47124 * 299.99478 * 15 14 13 48 48 H 1.08995 * 109.47066 * 59.99761 * 15 14 13 49 49 H 0.97008 * 119.99814 * 179.97438 * 19 18 16 50 50 H 1.09005 * 109.46717 * 299.99153 * 24 7 6 51 51 H 1.09003 * 109.47049 * 180.02562 * 24 7 6 52 52 H 1.08998 * 109.47487 * 180.02562 * 25 24 7 53 53 H 1.09005 * 109.46941 * 60.00219 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5700 -0.7206 1.2497 6 6 4.0799 -1.4424 2.4988 7 6 3.5704 -2.8850 2.4979 8 7 4.0593 -3.5749 1.3014 9 6 3.1077 -4.1461 0.3451 10 6 5.3843 -3.6840 1.0806 11 8 6.1739 -3.2095 1.8741 12 7 5.8340 -4.3182 -0.0204 13 6 7.2743 -4.4372 -0.2601 14 6 7.5126 -5.1942 -1.5683 15 6 9.0169 -5.3191 -1.8183 16 6 9.2517 -6.0652 -3.1065 17 1 8.4120 -6.4157 -3.6883 18 6 10.5385 -6.3005 -3.5421 19 7 11.5610 -5.8742 -2.8334 20 14 10.8296 -7.2260 -5.1385 21 1 9.5238 -7.5964 -5.7410 22 1 11.5831 -6.3613 -6.0816 23 1 11.6131 -8.4566 -4.8614 24 6 2.0404 -2.8855 2.4975 25 6 1.5304 -2.1638 1.2485 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -0.2072 2.1393 34 1 3.9336 -1.2343 0.3598 35 1 3.9330 0.3071 1.2499 36 1 3.7162 -0.9291 3.3888 37 1 5.1699 -1.4424 2.4987 38 1 3.9340 -3.3993 3.3875 39 1 2.9394 -3.4385 -0.4667 40 1 3.5121 -5.0739 -0.0596 41 1 2.1637 -4.3510 0.8501 42 1 5.2040 -4.6964 -0.6536 43 1 7.7143 -3.4425 -0.3311 44 1 7.7361 -4.9809 0.5640 45 1 7.0726 -6.1890 -1.4977 46 1 7.0509 -4.6502 -2.3921 47 1 9.4574 -4.3245 -1.8887 48 1 9.4783 -5.8633 -0.9943 49 1 12.4663 -6.0400 -3.1398 50 1 1.6767 -2.3723 3.3877 51 1 1.6774 -3.9133 2.4973 52 1 0.4404 -2.1638 1.2485 53 1 1.8941 -2.6771 0.3583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433325371.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:10 Heat of formation + Delta-G solvation = -50.571302 kcal Electronic energy + Delta-G solvation = -26987.103603 eV Core-core repulsion = 23472.001314 eV Total energy + Delta-G solvation = -3515.102289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90445 -38.85441 -36.27957 -35.25405 -33.80729 -32.93085 -31.43547 -31.00398 -29.41156 -27.53658 -26.83664 -26.21915 -23.51745 -22.70828 -22.53039 -20.71143 -20.57678 -19.99445 -19.07236 -17.62020 -16.61445 -16.31464 -16.04882 -15.51293 -14.84280 -14.60037 -14.55062 -14.43381 -14.12536 -13.90505 -13.85463 -13.56093 -13.27762 -13.03876 -12.59827 -12.50040 -12.31155 -12.28374 -12.09707 -11.87973 -11.74945 -11.67142 -11.46809 -11.34535 -11.07851 -11.02950 -10.90836 -10.69127 -10.55018 -10.45725 -10.20636 -10.17827 -9.83783 -9.69704 -9.37724 -9.09062 -8.81062 -8.38125 -8.36000 -6.00548 -4.03459 2.76955 3.30618 3.38047 3.41538 3.42909 4.09867 4.35753 4.43764 4.46013 4.53161 4.71645 4.80440 4.86377 4.98067 5.09828 5.14629 5.20792 5.29642 5.31429 5.35289 5.35409 5.40515 5.42427 5.46605 5.53624 5.58982 5.63644 5.69559 5.74166 5.78723 5.85196 5.86341 5.93415 5.98474 6.05365 6.06896 6.20234 6.22533 6.25531 6.36544 6.54128 6.65821 6.67017 6.88199 7.06283 7.10185 7.65969 7.78957 7.98719 8.15995 8.39791 8.83303 9.03521 9.60632 11.10796 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002451 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.427990 B =11419.633869 C =11880.846285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.078 4.078 5 C -0.109 4.109 6 C -0.138 4.138 7 C 0.171 3.829 8 N -0.628 5.628 9 C 0.070 3.930 10 C 0.703 3.297 11 O -0.589 6.589 12 N -0.742 5.742 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.125 4.125 25 C -0.143 4.143 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.393 0.607 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.260 0.740 50 H 0.076 0.924 51 H 0.068 0.932 52 H 0.063 0.937 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.836 10.005 9.175 29.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.097 4.097 5 C -0.147 4.147 6 C -0.177 4.177 7 C 0.068 3.932 8 N -0.367 5.367 9 C -0.073 4.073 10 C 0.404 3.596 11 O -0.467 6.467 12 N -0.398 5.398 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.163 4.163 25 C -0.180 4.180 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.227 0.773 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.070 0.930 50 H 0.095 0.905 51 H 0.086 0.914 52 H 0.082 0.918 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.044 10.355 9.766 28.806 hybrid contribution -0.069 -0.697 -1.219 1.406 sum -25.113 9.658 8.547 28.231 Atomic orbital electron populations 1.21891 0.95515 1.01678 1.01432 1.21134 0.95411 0.96194 0.98329 1.21893 1.01452 0.95963 1.01376 1.21183 0.95631 0.95305 0.97550 1.21536 0.94408 1.00109 0.98603 1.21994 1.03452 0.94352 0.97861 1.20771 0.92996 0.92704 0.86744 1.47043 1.04113 1.60439 1.25125 1.22052 0.94540 0.97699 0.92988 1.15910 0.81801 0.79480 0.82369 1.90869 1.54515 1.53774 1.47565 1.45534 1.09398 1.60631 1.24215 1.21483 0.77665 1.00865 0.98831 1.21881 1.01851 0.98358 0.93676 1.19030 0.87985 0.97447 0.96918 1.21243 0.91988 1.35866 1.06817 0.92629 1.25034 0.96293 0.95948 0.97243 1.69979 0.98455 1.46444 1.38391 0.86532 0.78197 0.79620 0.83620 1.19774 1.21007 1.21015 1.21832 0.94238 1.00848 0.99373 1.22297 1.00337 0.96075 0.99273 0.92928 0.93022 0.92449 0.91387 0.92261 0.93003 0.92908 0.91634 0.92083 0.92090 0.91774 0.89249 0.91239 0.92388 0.92069 0.89779 0.77285 0.92060 0.92070 0.92872 0.92857 0.96257 0.96264 0.92996 0.90546 0.91354 0.91827 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.84 37.16 0.33 -0.59 16 2 C -0.09 -0.67 2.51 -90.62 -0.23 -0.90 16 3 C -0.15 -1.11 8.84 37.15 0.33 -0.78 16 4 C -0.08 -0.60 1.78 -90.61 -0.16 -0.76 16 5 C -0.11 -1.08 4.69 -26.73 -0.13 -1.21 16 6 C -0.14 -1.53 5.23 -26.73 -0.14 -1.67 16 7 C 0.17 1.78 2.94 -67.93 -0.20 1.58 16 8 N -0.63 -7.22 2.25 -179.67 -0.40 -7.62 16 9 C 0.07 0.57 7.91 59.85 0.47 1.04 16 10 C 0.70 11.05 7.99 -86.92 -0.69 10.35 16 11 O -0.59 -11.52 14.39 5.29 0.08 -11.44 16 12 N -0.74 -11.25 5.42 -65.23 -0.35 -11.60 16 13 C 0.13 2.47 5.67 -4.04 -0.02 2.44 16 14 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.13 -0.89 4.91 -26.73 -0.13 -1.03 16 25 C -0.14 -0.96 4.19 -26.73 -0.11 -1.07 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.72 7.60 -51.93 -0.39 0.32 16 35 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.31 6.11 -51.93 -0.32 0.99 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.44 6.70 -51.93 -0.35 0.09 16 40 H 0.06 0.48 6.69 -51.93 -0.35 0.13 16 41 H 0.08 0.52 4.95 -51.93 -0.26 0.27 16 42 H 0.39 4.91 6.34 -40.82 -0.26 4.65 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.07 0.43 6.90 -51.93 -0.36 0.08 16 52 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 53 H 0.09 0.60 3.66 -51.93 -0.19 0.41 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -32.22 389.35 -10.16 -42.38 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -9.69 Total: 0.18 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.37 Total: -8.06 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.02 Total: -45.48 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.22 -10.16 -42.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433325371.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.192 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds