Wall clock time and date at job start Fri Apr 10 2020 22:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.46955 * 2 1 4 4 C 1.53005 * 109.46836 * 119.99513 * 2 1 3 5 5 C 1.53005 * 109.46977 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46977 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47222 * 59.99875 * 6 5 4 8 8 N 1.46509 * 109.47017 * 59.99903 * 7 6 5 9 9 C 1.46500 * 119.99772 * 239.23570 * 8 7 6 10 10 C 1.34774 * 119.99910 * 59.23418 * 8 7 6 11 11 O 1.21586 * 119.99879 * 359.97438 * 10 8 7 12 12 N 1.34780 * 119.99799 * 180.02562 * 10 8 7 13 13 C 1.46494 * 119.99790 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.46912 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.46877 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46852 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99878 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99745 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00073 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99779 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46978 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.46913 * 120.00255 * 20 18 16 23 23 H 1.48495 * 109.46941 * 240.00465 * 20 18 16 24 24 C 1.52998 * 109.47074 * 300.00410 * 7 6 5 25 25 C 1.52996 * 109.47833 * 59.99651 * 24 7 6 26 26 H 1.09005 * 109.47199 * 300.00523 * 1 2 3 27 27 H 1.08997 * 109.47211 * 60.00356 * 1 2 3 28 28 H 1.09003 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47509 * 239.99457 * 2 1 3 30 30 H 1.09006 * 109.47325 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47076 * 299.99288 * 3 2 1 32 32 H 1.08996 * 109.47671 * 59.99894 * 3 2 1 33 33 H 1.09005 * 109.47196 * 299.99965 * 4 2 1 34 34 H 1.08996 * 109.46778 * 299.99921 * 5 4 2 35 35 H 1.08995 * 109.47339 * 60.00098 * 5 4 2 36 36 H 1.08992 * 109.47026 * 300.00033 * 6 5 4 37 37 H 1.08998 * 109.46635 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.47141 * 179.97438 * 7 6 5 39 39 H 1.08998 * 109.47212 * 95.92929 * 9 8 7 40 40 H 1.09003 * 109.46749 * 215.92811 * 9 8 7 41 41 H 1.09000 * 109.47331 * 335.92955 * 9 8 7 42 42 H 0.97003 * 120.00035 * 359.97438 * 12 10 8 43 43 H 1.09003 * 109.47189 * 299.99601 * 13 12 10 44 44 H 1.08994 * 109.47397 * 60.00181 * 13 12 10 45 45 H 1.09003 * 109.46818 * 299.99767 * 14 13 12 46 46 H 1.08994 * 109.46991 * 59.99871 * 14 13 12 47 47 H 1.09003 * 109.47124 * 299.99478 * 15 14 13 48 48 H 1.08995 * 109.47066 * 59.99761 * 15 14 13 49 49 H 0.97008 * 119.99814 * 179.97438 * 19 18 16 50 50 H 1.09005 * 109.46717 * 299.99153 * 24 7 6 51 51 H 1.09003 * 109.47049 * 180.02562 * 24 7 6 52 52 H 1.08998 * 109.47487 * 180.02562 * 25 24 7 53 53 H 1.09005 * 109.46941 * 60.00219 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5700 -0.7206 1.2497 6 6 4.0799 -1.4424 2.4988 7 6 3.5704 -2.8850 2.4979 8 7 4.0593 -3.5749 1.3014 9 6 3.1077 -4.1461 0.3451 10 6 5.3843 -3.6840 1.0806 11 8 6.1739 -3.2095 1.8741 12 7 5.8340 -4.3182 -0.0204 13 6 7.2743 -4.4372 -0.2601 14 6 7.5126 -5.1942 -1.5683 15 6 9.0169 -5.3191 -1.8183 16 6 9.2517 -6.0652 -3.1065 17 1 8.4120 -6.4157 -3.6883 18 6 10.5385 -6.3005 -3.5421 19 7 11.5610 -5.8742 -2.8334 20 14 10.8296 -7.2260 -5.1385 21 1 9.5238 -7.5964 -5.7410 22 1 11.5831 -6.3613 -6.0816 23 1 11.6131 -8.4566 -4.8614 24 6 2.0404 -2.8855 2.4975 25 6 1.5304 -2.1638 1.2485 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -0.2072 2.1393 34 1 3.9336 -1.2343 0.3598 35 1 3.9330 0.3071 1.2499 36 1 3.7162 -0.9291 3.3888 37 1 5.1699 -1.4424 2.4987 38 1 3.9340 -3.3993 3.3875 39 1 2.9394 -3.4385 -0.4667 40 1 3.5121 -5.0739 -0.0596 41 1 2.1637 -4.3510 0.8501 42 1 5.2040 -4.6964 -0.6536 43 1 7.7143 -3.4425 -0.3311 44 1 7.7361 -4.9809 0.5640 45 1 7.0726 -6.1890 -1.4977 46 1 7.0509 -4.6502 -2.3921 47 1 9.4574 -4.3245 -1.8887 48 1 9.4783 -5.8633 -0.9943 49 1 12.4663 -6.0400 -3.1398 50 1 1.6767 -2.3723 3.3877 51 1 1.6774 -3.9133 2.4973 52 1 0.4404 -2.1638 1.2485 53 1 1.8941 -2.6771 0.3583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433325371.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:09 Heat of formation + Delta-G solvation = -68.344500 kcal Electronic energy + Delta-G solvation = -26987.874307 eV Core-core repulsion = 23472.001314 eV Total energy + Delta-G solvation = -3515.872993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85999 -39.84199 -37.24722 -36.69218 -35.32799 -34.29441 -32.69081 -32.15461 -30.21096 -28.52903 -28.03812 -27.20975 -25.10296 -23.69177 -23.28416 -22.30378 -21.69119 -20.61130 -20.19404 -18.74878 -18.44886 -17.37340 -17.19149 -16.63343 -16.46588 -15.93068 -15.67439 -15.26033 -15.07158 -14.92991 -14.74336 -14.36735 -14.29311 -14.05398 -13.89337 -13.73481 -13.46318 -13.29639 -13.03180 -12.98740 -12.78739 -12.75415 -12.53087 -12.48984 -12.32214 -12.15897 -11.99466 -11.85698 -11.67930 -11.61670 -11.56323 -11.27264 -11.15665 -10.97661 -10.86054 -10.56371 -10.55369 -10.13935 -9.40210 -8.19447 -6.31048 1.41772 1.42137 1.55365 1.68918 2.18303 2.41963 3.03803 3.14355 3.72165 3.75768 3.85608 4.08968 4.14787 4.17323 4.22192 4.23563 4.31735 4.41215 4.46221 4.55113 4.58466 4.62972 4.65460 4.71835 4.76711 4.82861 4.85428 4.87400 4.95245 4.98071 5.05590 5.07321 5.12321 5.15427 5.18921 5.19575 5.28307 5.32253 5.34829 5.41558 5.44605 5.48779 5.57013 5.59129 5.68446 5.70475 5.78010 5.84027 6.00679 6.22447 6.86252 7.02922 7.38571 7.61595 8.93034 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002451 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.427990 B =11419.633869 C =11880.846285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.071 4.071 5 C -0.102 4.102 6 C -0.136 4.136 7 C 0.166 3.834 8 N -0.618 5.618 9 C 0.061 3.939 10 C 0.696 3.304 11 O -0.635 6.635 12 N -0.733 5.733 13 C 0.151 3.849 14 C -0.099 4.099 15 C 0.024 3.976 16 C -0.539 4.539 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.257 1.257 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.115 4.115 25 C -0.141 4.141 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.408 0.592 43 H 0.042 0.958 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.067 0.933 47 H -0.009 1.009 48 H -0.009 1.009 49 H 0.263 0.737 50 H 0.090 0.910 51 H 0.085 0.915 52 H 0.085 0.915 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.436 9.142 8.058 31.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.089 4.089 5 C -0.140 4.140 6 C -0.175 4.175 7 C 0.063 3.937 8 N -0.355 5.355 9 C -0.080 4.080 10 C 0.397 3.603 11 O -0.517 6.517 12 N -0.390 5.390 13 C 0.026 3.974 14 C -0.137 4.137 15 C -0.014 4.014 16 C -0.577 4.577 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.153 4.153 25 C -0.177 4.177 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.246 0.754 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.009 0.991 48 H 0.010 0.990 49 H 0.072 0.928 50 H 0.108 0.892 51 H 0.104 0.896 52 H 0.103 0.897 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -28.722 9.482 8.632 31.454 hybrid contribution 1.065 -0.363 -0.809 1.386 sum -27.657 9.119 7.822 30.153 Atomic orbital electron populations 1.21858 0.94162 1.02409 1.01700 1.21109 0.96441 0.95660 0.97696 1.21898 1.00585 0.96506 1.01789 1.21122 0.93344 0.96466 0.98015 1.21459 0.96508 0.99117 0.96926 1.21921 1.00791 0.95602 0.99168 1.20923 0.95530 0.91619 0.85675 1.47079 1.02953 1.59596 1.25855 1.22374 0.94764 0.98042 0.92859 1.16143 0.83080 0.79198 0.81875 1.90846 1.56276 1.55502 1.49029 1.45196 1.08173 1.60882 1.24733 1.21028 0.79595 0.99281 0.97481 1.21575 0.97771 0.99600 0.94715 1.18939 0.91695 0.95185 0.95542 1.21700 0.92579 1.35836 1.07554 0.91461 1.26048 0.96071 0.96920 1.01201 1.70127 0.99036 1.47907 1.40569 0.85345 0.78646 0.77996 0.78724 1.18087 1.20585 1.20579 1.21811 0.90941 1.02248 1.00287 1.22307 1.01540 0.94940 0.98937 0.92541 0.92938 0.91452 0.92183 0.93645 0.92665 0.92438 0.91071 0.94151 0.92839 0.90324 0.93563 0.92859 0.91254 0.91426 0.87040 0.75395 0.93912 0.93770 0.91377 0.91468 0.99065 0.99020 0.92821 0.89183 0.89616 0.89683 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.84 71.98 0.64 -0.73 16 2 C -0.09 -1.15 2.51 -10.80 -0.03 -1.17 16 3 C -0.15 -2.09 8.84 71.98 0.64 -1.46 16 4 C -0.07 -0.94 1.78 -10.79 -0.02 -0.95 16 5 C -0.10 -2.03 4.69 30.60 0.14 -1.89 16 6 C -0.14 -3.08 5.23 30.60 0.16 -2.92 16 7 C 0.17 3.31 2.94 44.99 0.13 3.44 16 8 N -0.62 -13.66 2.25 -840.60 -1.89 -15.55 16 9 C 0.06 0.82 7.91 127.77 1.01 1.83 16 10 C 0.70 22.26 7.99 179.05 1.43 23.69 16 11 O -0.63 -26.23 14.39 -3.99 -0.06 -26.28 16 12 N -0.73 -22.10 5.42 -478.54 -2.59 -24.70 16 13 C 0.15 5.69 5.67 86.38 0.49 6.18 16 14 C -0.10 -3.92 5.27 30.60 0.16 -3.75 16 15 C 0.02 1.28 4.97 29.85 0.15 1.43 16 16 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 18 C 0.00 -0.29 5.46 84.66 0.46 0.18 16 19 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 20 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 C -0.12 -1.28 4.91 30.59 0.15 -1.13 16 25 C -0.14 -1.40 4.19 30.59 0.13 -1.27 16 26 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.51 6.43 -2.39 -0.02 0.50 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.04 0.74 6.43 -2.38 -0.02 0.73 16 31 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.04 0.96 7.60 -2.39 -0.02 0.94 16 35 H 0.05 1.11 6.43 -2.39 -0.02 1.10 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.46 6.11 -2.39 -0.01 1.44 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 0.83 6.70 -2.39 -0.02 0.82 16 40 H 0.07 0.85 6.69 -2.39 -0.02 0.83 16 41 H 0.11 0.92 4.95 -2.39 -0.01 0.91 16 42 H 0.41 9.56 6.34 -92.71 -0.59 8.97 16 43 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 47 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 48 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 49 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 50 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 51 H 0.09 0.72 6.90 -2.39 -0.02 0.70 16 52 H 0.08 0.57 6.43 -2.39 -0.02 0.56 16 53 H 0.09 0.90 3.66 -2.38 -0.01 0.89 16 Total: -1.00 -72.96 389.35 3.93 -69.02 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.29 Total: 17.61 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 5.88 Total: -8.65 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -4.20 Total: -97.80 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.06 Total: -26.28 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -72.96 3.93 -69.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433325371.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.680 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds