Wall clock time and date at job start Fri Apr 10 2020 22:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46696 * 2 1 4 4 C 1.53003 * 109.47081 * 119.99695 * 2 1 3 5 5 C 1.52999 * 109.47023 * 297.71476 * 4 2 1 6 6 C 1.54244 * 108.89491 * 207.13387 * 5 4 2 7 7 C 1.50473 * 108.52396 * 159.26510 * 6 5 4 8 8 C 1.54071 * 112.50189 * 94.15028 * 7 6 5 9 9 C 1.54061 * 112.81422 * 318.28735 * 8 7 6 10 10 C 1.50478 * 112.49447 * 318.27702 * 9 8 7 11 11 C 1.45542 * 108.89676 * 84.24898 * 5 4 2 12 12 N 1.46493 * 109.47463 * 239.99822 * 2 1 3 13 13 C 1.34779 * 120.00252 * 59.99856 * 12 2 1 14 14 O 1.21594 * 119.99765 * 359.97438 * 13 12 2 15 15 N 1.34775 * 120.00297 * 180.02562 * 13 12 2 16 16 C 1.46504 * 119.99871 * 179.97438 * 15 13 12 17 17 C 1.52993 * 109.46951 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.47291 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00015 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00576 * 179.97438 * 18 17 16 21 21 N 1.31523 * 119.99551 * 0.02562 * 20 18 17 22 22 Si 1.86789 * 120.00433 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47470 * 90.00125 * 22 20 18 24 24 H 1.48498 * 109.47383 * 210.00311 * 22 20 18 25 25 H 1.48503 * 109.47296 * 330.00189 * 22 20 18 26 26 H 1.08996 * 109.47350 * 315.32626 * 1 2 3 27 27 H 1.08994 * 109.46722 * 75.32776 * 1 2 3 28 28 H 1.09001 * 109.46934 * 195.32648 * 1 2 3 29 29 H 1.09005 * 109.46909 * 173.16716 * 3 2 1 30 30 H 1.08998 * 109.46736 * 293.15795 * 3 2 1 31 31 H 1.08998 * 109.47607 * 53.16666 * 3 2 1 32 32 H 1.09004 * 109.46924 * 177.71854 * 4 2 1 33 33 H 1.08994 * 109.46945 * 57.71689 * 4 2 1 34 34 H 1.09001 * 108.87401 * 325.64358 * 5 4 2 35 35 H 1.09000 * 109.62931 * 278.97290 * 6 5 4 36 36 H 1.09000 * 109.62715 * 39.55743 * 6 5 4 37 37 H 1.09003 * 108.88106 * 333.36990 * 7 6 5 38 38 H 1.09001 * 108.87580 * 214.92758 * 7 6 5 39 39 H 1.08998 * 108.81579 * 197.41816 * 8 7 6 40 40 H 1.09008 * 108.72218 * 79.07987 * 8 7 6 41 41 H 1.09002 * 108.88103 * 197.50461 * 9 8 7 42 42 H 1.08997 * 108.88218 * 79.05591 * 9 8 7 43 43 H 1.08991 * 109.63023 * 334.45145 * 10 9 8 44 44 H 1.09003 * 109.63345 * 213.86433 * 10 9 8 45 45 H 1.08994 * 108.89859 * 303.44326 * 11 5 4 46 46 H 1.09002 * 108.89203 * 62.03304 * 11 5 4 47 47 H 0.97005 * 120.00411 * 240.00023 * 12 2 1 48 48 H 0.96993 * 119.99937 * 359.97438 * 15 13 12 49 49 H 1.09000 * 109.47155 * 300.00143 * 16 15 13 50 50 H 1.08996 * 109.46807 * 60.00200 * 16 15 13 51 51 H 1.09004 * 109.47508 * 300.00527 * 17 16 15 52 52 H 1.09003 * 109.47305 * 60.00072 * 17 16 15 53 53 H 0.96997 * 119.99620 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5775 0.0326 2.4978 6 6 2.5800 -0.2306 3.6402 7 6 2.4366 0.8633 4.6634 8 6 1.4745 0.4810 5.8045 9 6 0.2133 -0.2482 5.3033 10 6 -0.3452 0.3645 4.0476 11 6 0.2280 -0.3961 2.8343 12 7 2.0184 -0.6906 -1.1961 13 6 1.6929 -0.2302 -2.4202 14 8 0.9934 0.7581 -2.5319 15 7 2.1418 -0.8659 -3.5206 16 6 1.7874 -0.3657 -4.8513 17 6 2.4207 -1.2611 -5.9180 18 6 2.0557 -0.7471 -7.2867 19 1 1.4345 0.1308 -7.3859 20 6 2.5157 -1.3967 -8.4125 21 7 3.2727 -2.4655 -8.2918 22 14 2.0639 -0.7591 -10.1091 23 1 3.0866 0.2190 -10.5589 24 1 2.0092 -1.8935 -11.0659 25 1 0.7364 -0.0960 -10.0513 26 1 -0.3634 0.7308 0.7225 27 1 -0.3632 0.2603 -0.9941 28 1 -0.3633 -0.9911 0.2716 29 1 3.1231 1.4450 0.1223 30 1 1.7799 1.9197 -0.9449 31 1 1.5802 1.9905 0.8225 32 1 3.1293 -0.7568 1.2291 33 1 1.6436 -1.7363 1.2700 34 1 1.5647 1.1006 2.2804 35 1 2.3644 -1.1942 4.1018 36 1 3.5953 -0.2302 3.2436 37 1 2.0607 1.7601 4.1708 38 1 3.4172 1.0807 5.0869 39 1 1.1718 1.3879 6.3278 40 1 2.0015 -0.1684 6.5037 41 1 -0.5482 -0.2117 6.0824 42 1 0.4635 -1.2906 5.1060 43 1 -0.0556 1.4138 3.9920 44 1 -1.4321 0.2814 4.0516 45 1 -0.4204 -0.2288 1.9743 46 1 0.2428 -1.4619 3.0626 47 1 2.5761 -1.4793 -1.1071 48 1 2.6994 -1.6545 -3.4316 49 1 0.7035 -0.3744 -4.9659 50 1 2.1568 0.6532 -4.9666 51 1 3.5047 -1.2521 -5.8031 52 1 2.0517 -2.2803 -5.8027 53 1 3.5960 -2.9228 -9.0838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436329659.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:12 Heat of formation + Delta-G solvation = -64.192391 kcal Electronic energy + Delta-G solvation = -26578.234837 eV Core-core repulsion = 23062.541893 eV Total energy + Delta-G solvation = -3515.692944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.55223 -39.29969 -36.78394 -34.67836 -33.41396 -32.80572 -32.46128 -30.96992 -29.02537 -27.68150 -27.24000 -24.97999 -24.67714 -23.75650 -21.42989 -20.73900 -20.22456 -19.58372 -19.38540 -17.98026 -16.32404 -16.30770 -15.74800 -15.16880 -15.01626 -14.91744 -14.72308 -14.48170 -14.17731 -13.80009 -13.66951 -13.35360 -13.27410 -13.07358 -12.87329 -12.54588 -12.40193 -12.24719 -11.94480 -11.94030 -11.65199 -11.24017 -11.16170 -11.07125 -11.00071 -10.94557 -10.67563 -10.61512 -10.60201 -10.54605 -10.50817 -10.29264 -10.10636 -9.65921 -9.41399 -9.17168 -8.89027 -8.45735 -8.18943 -6.07372 -4.09765 3.09706 3.30906 3.36993 3.41718 3.67070 4.26336 4.36137 4.41428 4.50390 4.64980 4.72106 4.77831 4.89559 4.95366 4.99704 5.04929 5.12241 5.14747 5.22467 5.29683 5.45521 5.48256 5.57716 5.61753 5.69519 5.73851 5.77310 5.83008 5.85826 5.88691 5.91069 5.93467 5.94217 5.98465 6.02595 6.14296 6.23474 6.25276 6.32879 6.43477 6.49061 6.51516 6.80690 6.86670 7.08539 7.34052 7.60492 7.66290 7.92227 8.29202 8.52617 8.95689 9.09468 9.54778 11.04300 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.043832 B = 0.002037 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.654420 B =13743.329581 C =13891.344695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.195 3.805 3 C -0.166 4.166 4 C -0.120 4.120 5 C -0.083 4.083 6 C -0.111 4.111 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.118 4.118 10 C -0.118 4.118 11 C -0.137 4.137 12 N -0.748 5.748 13 C 0.700 3.300 14 O -0.594 6.594 15 N -0.741 5.741 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.085 0.915 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.392 0.608 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.021 0.979 52 H 0.021 0.979 53 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 2.648 29.126 29.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.109 3.891 3 C -0.224 4.224 4 C -0.158 4.158 5 C -0.101 4.101 6 C -0.149 4.149 7 C -0.157 4.157 8 C -0.154 4.154 9 C -0.156 4.156 10 C -0.155 4.155 11 C -0.174 4.174 12 N -0.404 5.404 13 C 0.401 3.599 14 O -0.473 6.473 15 N -0.395 5.395 16 C 0.018 3.982 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.076 0.924 47 H 0.224 0.776 48 H 0.225 0.775 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.040 0.960 52 H 0.040 0.960 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.887 3.440 28.879 29.226 hybrid contribution 0.463 -0.607 -0.838 1.134 sum -2.424 2.833 28.040 28.287 Atomic orbital electron populations 1.22512 0.94893 1.01120 1.04094 1.20027 0.93929 0.92168 0.82969 1.22336 1.00398 0.95893 1.03762 1.22075 1.01049 0.99379 0.93282 1.20154 0.95136 1.01138 0.93706 1.21443 0.98699 0.99065 0.95682 1.21330 0.98880 0.98990 0.96453 1.21908 0.95793 1.00044 0.97658 1.21346 0.96722 0.99983 0.97537 1.21323 0.99591 1.00095 0.94508 1.21087 0.97033 0.99934 0.99358 1.45329 1.57360 1.33297 1.04389 1.16061 0.80471 0.83104 0.80305 1.90818 1.42916 1.27649 1.85931 1.45583 1.55503 1.32374 1.05992 1.21550 0.99478 0.98445 0.78698 1.19321 0.96259 0.94793 0.92110 1.21059 1.31814 1.12581 0.90381 0.92238 1.25005 0.95000 0.94904 0.99482 1.69963 1.34776 1.19051 1.29581 0.86506 0.79000 0.78389 0.83617 1.20589 1.21204 1.19728 0.91493 0.90055 0.92901 0.93111 0.89896 0.92078 0.91359 0.91433 0.90340 0.91786 0.91919 0.92030 0.92548 0.92564 0.92610 0.92760 0.92161 0.91734 0.92168 0.89724 0.92422 0.77552 0.77545 0.92880 0.92892 0.96032 0.96024 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 6.89 37.16 0.26 -1.73 16 2 C 0.20 2.18 0.83 -131.82 -0.11 2.07 16 3 C -0.17 -1.99 7.96 37.16 0.30 -1.70 16 4 C -0.12 -0.99 4.10 -26.73 -0.11 -1.10 16 5 C -0.08 -0.61 1.43 -93.49 -0.13 -0.74 16 6 C -0.11 -0.75 4.97 -27.34 -0.14 -0.88 16 7 C -0.12 -0.76 5.31 -27.43 -0.15 -0.91 16 8 C -0.12 -0.71 5.85 -25.62 -0.15 -0.86 16 9 C -0.12 -0.75 5.31 -27.44 -0.15 -0.89 16 10 C -0.12 -0.80 5.61 -27.34 -0.15 -0.95 16 11 C -0.14 -1.00 4.11 -29.60 -0.12 -1.12 16 12 N -0.75 -9.56 5.11 -52.41 -0.27 -9.83 16 13 C 0.70 12.12 7.88 -86.92 -0.69 11.43 16 14 O -0.59 -12.21 12.53 5.28 0.07 -12.14 16 15 N -0.74 -13.23 5.56 -65.23 -0.36 -13.60 16 16 C 0.14 3.07 5.61 -4.04 -0.02 3.04 16 17 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 18 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.63 5.46 -17.81 -0.10 1.53 16 21 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 22 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H 0.07 0.69 6.18 -51.93 -0.32 0.37 16 27 H 0.08 1.26 5.89 -51.93 -0.31 0.96 16 28 H 0.05 0.57 7.42 -51.93 -0.39 0.18 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.29 6.00 -51.93 -0.31 0.98 16 31 H 0.06 0.62 6.15 -51.93 -0.32 0.30 16 32 H 0.07 0.54 7.52 -51.93 -0.39 0.15 16 33 H 0.07 0.54 7.79 -51.93 -0.40 0.14 16 34 H 0.08 0.63 4.83 -51.93 -0.25 0.38 16 35 H 0.06 0.43 6.98 -51.93 -0.36 0.07 16 36 H 0.06 0.42 7.59 -51.93 -0.39 0.03 16 37 H 0.06 0.42 6.63 -51.93 -0.34 0.07 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 41 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.39 6.63 -51.93 -0.34 0.05 16 43 H 0.06 0.45 6.98 -51.93 -0.36 0.09 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.68 3.65 -51.93 -0.19 0.49 16 46 H 0.06 0.42 7.37 -51.93 -0.38 0.04 16 47 H 0.39 4.03 8.49 -40.82 -0.35 3.68 16 48 H 0.39 6.07 8.49 -40.82 -0.35 5.73 16 49 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 51 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 53 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -31.01 384.94 -10.49 -41.50 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -9.53 Total: 4.79 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.91 Total: -7.49 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.11 Total: -48.98 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.01 -10.49 -41.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436329659.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.688 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds