Wall clock time and date at job start Fri Apr 10 2020 22:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46696 * 2 1 4 4 C 1.53003 * 109.47081 * 119.99695 * 2 1 3 5 5 C 1.52999 * 109.47023 * 297.71476 * 4 2 1 6 6 C 1.54244 * 108.89491 * 207.13387 * 5 4 2 7 7 C 1.50473 * 108.52396 * 159.26510 * 6 5 4 8 8 C 1.54071 * 112.50189 * 94.15028 * 7 6 5 9 9 C 1.54061 * 112.81422 * 318.28735 * 8 7 6 10 10 C 1.50478 * 112.49447 * 318.27702 * 9 8 7 11 11 C 1.45542 * 108.89676 * 84.24898 * 5 4 2 12 12 N 1.46493 * 109.47463 * 239.99822 * 2 1 3 13 13 C 1.34779 * 120.00252 * 59.99856 * 12 2 1 14 14 O 1.21594 * 119.99765 * 359.97438 * 13 12 2 15 15 N 1.34775 * 120.00297 * 180.02562 * 13 12 2 16 16 C 1.46504 * 119.99871 * 179.97438 * 15 13 12 17 17 C 1.52993 * 109.46951 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.47291 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00015 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00576 * 179.97438 * 18 17 16 21 21 N 1.31523 * 119.99551 * 0.02562 * 20 18 17 22 22 Si 1.86789 * 120.00433 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47470 * 90.00125 * 22 20 18 24 24 H 1.48498 * 109.47383 * 210.00311 * 22 20 18 25 25 H 1.48503 * 109.47296 * 330.00189 * 22 20 18 26 26 H 1.08996 * 109.47350 * 315.32626 * 1 2 3 27 27 H 1.08994 * 109.46722 * 75.32776 * 1 2 3 28 28 H 1.09001 * 109.46934 * 195.32648 * 1 2 3 29 29 H 1.09005 * 109.46909 * 173.16716 * 3 2 1 30 30 H 1.08998 * 109.46736 * 293.15795 * 3 2 1 31 31 H 1.08998 * 109.47607 * 53.16666 * 3 2 1 32 32 H 1.09004 * 109.46924 * 177.71854 * 4 2 1 33 33 H 1.08994 * 109.46945 * 57.71689 * 4 2 1 34 34 H 1.09001 * 108.87401 * 325.64358 * 5 4 2 35 35 H 1.09000 * 109.62931 * 278.97290 * 6 5 4 36 36 H 1.09000 * 109.62715 * 39.55743 * 6 5 4 37 37 H 1.09003 * 108.88106 * 333.36990 * 7 6 5 38 38 H 1.09001 * 108.87580 * 214.92758 * 7 6 5 39 39 H 1.08998 * 108.81579 * 197.41816 * 8 7 6 40 40 H 1.09008 * 108.72218 * 79.07987 * 8 7 6 41 41 H 1.09002 * 108.88103 * 197.50461 * 9 8 7 42 42 H 1.08997 * 108.88218 * 79.05591 * 9 8 7 43 43 H 1.08991 * 109.63023 * 334.45145 * 10 9 8 44 44 H 1.09003 * 109.63345 * 213.86433 * 10 9 8 45 45 H 1.08994 * 108.89859 * 303.44326 * 11 5 4 46 46 H 1.09002 * 108.89203 * 62.03304 * 11 5 4 47 47 H 0.97005 * 120.00411 * 240.00023 * 12 2 1 48 48 H 0.96993 * 119.99937 * 359.97438 * 15 13 12 49 49 H 1.09000 * 109.47155 * 300.00143 * 16 15 13 50 50 H 1.08996 * 109.46807 * 60.00200 * 16 15 13 51 51 H 1.09004 * 109.47508 * 300.00527 * 17 16 15 52 52 H 1.09003 * 109.47305 * 60.00072 * 17 16 15 53 53 H 0.96997 * 119.99620 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5775 0.0326 2.4978 6 6 2.5800 -0.2306 3.6402 7 6 2.4366 0.8633 4.6634 8 6 1.4745 0.4810 5.8045 9 6 0.2133 -0.2482 5.3033 10 6 -0.3452 0.3645 4.0476 11 6 0.2280 -0.3961 2.8343 12 7 2.0184 -0.6906 -1.1961 13 6 1.6929 -0.2302 -2.4202 14 8 0.9934 0.7581 -2.5319 15 7 2.1418 -0.8659 -3.5206 16 6 1.7874 -0.3657 -4.8513 17 6 2.4207 -1.2611 -5.9180 18 6 2.0557 -0.7471 -7.2867 19 1 1.4345 0.1308 -7.3859 20 6 2.5157 -1.3967 -8.4125 21 7 3.2727 -2.4655 -8.2918 22 14 2.0639 -0.7591 -10.1091 23 1 3.0866 0.2190 -10.5589 24 1 2.0092 -1.8935 -11.0659 25 1 0.7364 -0.0960 -10.0513 26 1 -0.3634 0.7308 0.7225 27 1 -0.3632 0.2603 -0.9941 28 1 -0.3633 -0.9911 0.2716 29 1 3.1231 1.4450 0.1223 30 1 1.7799 1.9197 -0.9449 31 1 1.5802 1.9905 0.8225 32 1 3.1293 -0.7568 1.2291 33 1 1.6436 -1.7363 1.2700 34 1 1.5647 1.1006 2.2804 35 1 2.3644 -1.1942 4.1018 36 1 3.5953 -0.2302 3.2436 37 1 2.0607 1.7601 4.1708 38 1 3.4172 1.0807 5.0869 39 1 1.1718 1.3879 6.3278 40 1 2.0015 -0.1684 6.5037 41 1 -0.5482 -0.2117 6.0824 42 1 0.4635 -1.2906 5.1060 43 1 -0.0556 1.4138 3.9920 44 1 -1.4321 0.2814 4.0516 45 1 -0.4204 -0.2288 1.9743 46 1 0.2428 -1.4619 3.0626 47 1 2.5761 -1.4793 -1.1071 48 1 2.6994 -1.6545 -3.4316 49 1 0.7035 -0.3744 -4.9659 50 1 2.1568 0.6532 -4.9666 51 1 3.5047 -1.2521 -5.8031 52 1 2.0517 -2.2803 -5.8027 53 1 3.5960 -2.9228 -9.0838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436329659.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:12 Heat of formation + Delta-G solvation = -82.277285 kcal Electronic energy + Delta-G solvation = -26579.019057 eV Core-core repulsion = 23062.541893 eV Total energy + Delta-G solvation = -3516.477164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.56187 -40.26095 -37.79620 -36.34824 -34.83910 -34.23973 -32.98696 -32.21978 -30.68425 -28.52245 -28.04716 -26.68760 -25.43107 -24.51980 -23.03720 -22.11477 -21.05939 -20.41021 -20.07563 -19.33736 -18.39269 -17.19853 -16.68171 -16.51619 -16.47367 -15.94322 -15.62005 -15.51532 -15.19025 -15.03628 -14.96668 -14.39088 -14.32124 -14.22529 -13.82346 -13.60032 -13.21838 -13.19706 -13.05205 -12.93387 -12.80221 -12.74447 -12.51467 -12.41053 -12.23786 -12.05899 -11.92589 -11.60775 -11.51729 -11.43060 -11.28002 -11.17399 -11.12183 -11.07425 -10.91415 -10.59573 -10.50690 -10.19744 -9.66548 -8.23632 -6.33772 1.41936 1.42584 1.54041 1.83637 2.26949 2.41762 3.10982 3.37759 3.64556 3.80726 3.94043 4.02322 4.10413 4.20015 4.34561 4.36173 4.40170 4.48756 4.49905 4.54113 4.54782 4.63399 4.77984 4.79597 4.87533 4.88357 4.91195 4.93503 5.00351 5.06286 5.08793 5.17782 5.23152 5.28976 5.33681 5.36471 5.40230 5.41308 5.44374 5.46494 5.54478 5.60266 5.60722 5.62065 5.68139 5.72596 5.78225 5.81877 6.14278 6.19106 6.79461 7.22913 7.35584 7.71793 8.88256 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.043832 B = 0.002037 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.654420 B =13743.329581 C =13891.344695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.192 3.808 3 C -0.162 4.162 4 C -0.110 4.110 5 C -0.077 4.077 6 C -0.107 4.107 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.117 4.117 10 C -0.117 4.117 11 C -0.135 4.135 12 N -0.730 5.730 13 C 0.698 3.302 14 O -0.627 6.627 15 N -0.738 5.738 16 C 0.163 3.837 17 C 0.024 3.976 18 C -0.546 4.546 19 H 0.058 0.942 20 C 0.006 3.994 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.267 1.267 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.407 0.593 48 H 0.404 0.596 49 H 0.041 0.959 50 H 0.041 0.959 51 H 0.008 0.992 52 H 0.008 0.992 53 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.113 2.406 30.453 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.106 3.894 3 C -0.220 4.220 4 C -0.148 4.148 5 C -0.096 4.096 6 C -0.145 4.145 7 C -0.157 4.157 8 C -0.154 4.154 9 C -0.155 4.155 10 C -0.154 4.154 11 C -0.172 4.172 12 N -0.386 5.386 13 C 0.398 3.602 14 O -0.509 6.509 15 N -0.393 5.393 16 C 0.039 3.961 17 C -0.013 4.013 18 C -0.584 4.584 19 H 0.076 0.924 20 C -0.193 4.193 21 N -0.566 5.566 22 Si 0.790 3.210 23 H -0.198 1.198 24 H -0.205 1.205 25 H -0.191 1.191 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.079 0.921 47 H 0.243 0.757 48 H 0.239 0.761 49 H 0.059 0.941 50 H 0.059 0.941 51 H 0.026 0.974 52 H 0.026 0.974 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.660 3.172 30.257 30.539 hybrid contribution 0.392 -0.527 -1.167 1.339 sum -2.268 2.645 29.091 29.298 Atomic orbital electron populations 1.22469 0.95302 1.02171 1.02101 1.20246 0.93666 0.92117 0.83340 1.22283 1.01029 0.96321 1.02357 1.22024 1.01598 0.99433 0.91731 1.20111 0.95419 1.00556 0.93514 1.21406 0.98504 0.99243 0.95341 1.21326 0.99155 0.98709 0.96477 1.21905 0.95661 1.00168 0.97619 1.21331 0.96903 0.99879 0.97362 1.21309 0.99674 0.99882 0.94554 1.21048 0.96767 1.00191 0.99216 1.45242 1.56630 1.33475 1.03264 1.16186 0.80136 0.82659 0.81184 1.90811 1.44326 1.29165 1.86561 1.45291 1.56053 1.32986 1.04971 1.21005 0.98205 0.97078 0.79860 1.19121 0.95347 0.94476 0.92393 1.21467 1.32103 1.12849 0.92001 0.92351 1.25885 0.94770 0.95045 1.03594 1.70064 1.35552 1.20075 1.30894 0.85432 0.78961 0.78009 0.78568 1.19766 1.20470 1.19102 0.90053 0.93983 0.91738 0.92395 0.93713 0.90273 0.90364 0.90530 0.90909 0.91537 0.91626 0.92468 0.92173 0.92463 0.92237 0.92450 0.92197 0.92012 0.92093 0.90552 0.92129 0.75748 0.76071 0.94059 0.94056 0.97405 0.97399 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 6.89 71.98 0.50 -3.23 16 2 C 0.19 4.04 0.83 3.61 0.00 4.04 16 3 C -0.16 -3.77 7.96 71.98 0.57 -3.20 16 4 C -0.11 -1.54 4.10 30.60 0.13 -1.42 16 5 C -0.08 -0.96 1.43 -12.65 -0.02 -0.98 16 6 C -0.11 -1.17 4.97 30.20 0.15 -1.02 16 7 C -0.12 -1.29 5.31 30.14 0.16 -1.13 16 8 C -0.12 -1.19 5.85 31.31 0.18 -1.01 16 9 C -0.12 -1.25 5.31 30.14 0.16 -1.09 16 10 C -0.12 -1.38 5.61 30.20 0.17 -1.21 16 11 C -0.14 -1.70 4.11 28.74 0.12 -1.58 16 12 N -0.73 -17.90 5.11 -438.00 -2.24 -20.14 16 13 C 0.70 24.23 7.88 179.05 1.41 25.64 16 14 O -0.63 -26.45 12.53 -4.01 -0.05 -26.50 16 15 N -0.74 -26.49 5.56 -478.54 -2.66 -29.15 16 16 C 0.16 7.24 5.61 86.38 0.48 7.73 16 17 C 0.02 1.24 5.09 29.84 0.15 1.39 16 18 C -0.55 -30.92 9.11 25.60 0.23 -30.69 16 19 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 20 C 0.01 0.32 5.46 84.65 0.46 0.79 16 21 N -0.93 -54.68 13.29 21.45 0.28 -54.39 16 22 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 26 H 0.08 1.60 6.18 -2.39 -0.01 1.58 16 27 H 0.04 1.32 5.89 -2.39 -0.01 1.31 16 28 H 0.06 1.30 7.42 -2.39 -0.02 1.28 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.04 1.41 6.00 -2.39 -0.01 1.40 16 31 H 0.08 1.52 6.15 -2.39 -0.01 1.51 16 32 H 0.08 1.00 7.52 -2.38 -0.02 0.98 16 33 H 0.08 0.99 7.79 -2.39 -0.02 0.97 16 34 H 0.07 1.02 4.83 -2.39 -0.01 1.01 16 35 H 0.07 0.72 6.98 -2.39 -0.02 0.70 16 36 H 0.07 0.70 7.59 -2.39 -0.02 0.68 16 37 H 0.06 0.67 6.63 -2.39 -0.02 0.66 16 38 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.06 0.65 6.63 -2.39 -0.02 0.64 16 43 H 0.06 0.77 6.98 -2.39 -0.02 0.75 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.08 1.09 3.65 -2.39 -0.01 1.08 16 46 H 0.06 0.74 7.37 -2.39 -0.02 0.72 16 47 H 0.41 7.58 8.49 -92.70 -0.79 6.79 16 48 H 0.40 12.39 8.49 -92.71 -0.79 11.60 16 49 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 52 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 53 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -67.13 384.94 1.55 -65.58 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.67 Total: 25.50 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 4.86 Total: -6.97 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -4.61 Total: -103.69 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.13 1.55 -65.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436329659.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.696 kcal (2) G-P(sol) polarization free energy of solvation -67.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds