Wall clock time and date at job start Fri Apr 10 2020 22:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47045 * 2 1 4 4 C 1.53001 * 109.47320 * 119.99936 * 2 1 3 5 5 C 1.52999 * 109.47251 * 170.09875 * 4 2 1 6 6 C 1.52999 * 109.46772 * 308.23395 * 5 4 2 7 7 C 1.52993 * 109.47114 * 188.23602 * 5 4 2 8 8 C 1.50700 * 109.47149 * 68.23372 * 5 4 2 9 9 O 1.21281 * 119.99811 * 27.05164 * 8 5 4 10 10 N 1.34775 * 119.99713 * 207.05477 * 8 5 4 11 11 C 1.46500 * 119.99746 * 180.02562 * 10 8 5 12 12 C 1.52998 * 109.47176 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.52241 * 305.07184 * 12 11 10 14 14 C 1.53039 * 109.49832 * 184.99731 * 12 11 10 15 15 C 1.53038 * 109.52779 * 178.68831 * 14 12 11 16 16 C 1.53165 * 109.32770 * 61.37191 * 15 14 12 17 17 N 1.46924 * 108.76830 * 305.35684 * 16 15 14 18 18 C 1.36930 * 120.62959 * 233.63410 * 17 16 15 19 19 H 1.08001 * 120.00142 * 146.26547 * 18 17 16 20 20 C 1.38816 * 119.99961 * 326.26043 * 18 17 16 21 21 N 1.31615 * 119.99928 * 342.65518 * 20 18 17 22 22 Si 1.86801 * 119.99883 * 162.65597 * 20 18 17 23 23 H 1.48499 * 109.47269 * 90.00158 * 22 20 18 24 24 H 1.48502 * 109.47070 * 210.00047 * 22 20 18 25 25 H 1.48501 * 109.47120 * 329.99794 * 22 20 18 26 26 C 1.46926 * 118.73798 * 53.60792 * 17 16 15 27 27 H 1.08994 * 109.46834 * 299.99932 * 1 2 3 28 28 H 1.08999 * 109.47056 * 60.00022 * 1 2 3 29 29 H 1.08997 * 109.46644 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46813 * 239.99926 * 2 1 3 31 31 H 1.08997 * 109.46778 * 320.31913 * 3 2 1 32 32 H 1.08990 * 109.46912 * 80.32026 * 3 2 1 33 33 H 1.09002 * 109.46982 * 200.32717 * 3 2 1 34 34 H 1.09007 * 109.46985 * 50.09856 * 4 2 1 35 35 H 1.09002 * 109.46825 * 290.09913 * 4 2 1 36 36 H 1.09003 * 109.47099 * 190.33087 * 6 5 4 37 37 H 1.09002 * 109.47410 * 310.32599 * 6 5 4 38 38 H 1.08998 * 109.47477 * 70.33034 * 6 5 4 39 39 H 1.09006 * 109.47083 * 299.99737 * 7 5 4 40 40 H 1.09001 * 109.47484 * 59.99921 * 7 5 4 41 41 H 1.08995 * 109.47375 * 179.97438 * 7 5 4 42 42 H 0.96996 * 120.00545 * 359.97438 * 10 8 5 43 43 H 1.09002 * 109.47686 * 59.99004 * 11 10 8 44 44 H 1.09001 * 109.47102 * 299.99383 * 11 10 8 45 45 H 1.09003 * 109.46340 * 298.70212 * 14 12 11 46 46 H 1.09004 * 109.45869 * 58.67283 * 14 12 11 47 47 H 1.09003 * 109.49550 * 181.30914 * 15 14 12 48 48 H 1.08995 * 109.49725 * 301.40639 * 15 14 12 49 49 H 1.09003 * 109.59111 * 185.56715 * 16 15 14 50 50 H 1.09005 * 109.70650 * 65.20949 * 16 15 14 51 51 H 0.97003 * 120.00005 * 179.97438 * 21 20 18 52 52 H 1.09007 * 109.58533 * 186.60439 * 26 17 16 53 53 H 1.08998 * 109.70468 * 66.25105 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5499 -0.9396 1.1314 6 6 3.8651 -1.6102 -0.2071 7 6 4.0263 -1.8363 2.2758 8 6 4.2570 0.3891 1.2065 9 8 3.7485 1.3137 1.8043 10 7 5.4544 0.5498 0.6092 11 6 6.1421 1.8413 0.6827 12 6 7.4708 1.7552 -0.0710 13 1 8.0592 0.9259 0.3216 14 6 8.2461 3.0622 0.1097 15 6 9.5895 2.9646 -0.6169 16 6 9.3422 2.7524 -2.1135 17 7 8.4757 1.5788 -2.2877 18 6 8.8508 0.5507 -3.1106 19 1 8.5754 -0.4647 -2.8661 20 6 9.5848 0.8133 -4.2591 21 7 9.6325 2.0358 -4.7444 22 14 10.5050 -0.5683 -5.1158 23 1 9.6193 -1.2012 -6.1258 24 1 11.7092 -0.0183 -5.7887 25 1 10.9181 -1.5836 -4.1140 26 6 7.1993 1.5291 -1.5616 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.4155 2.0486 -0.6562 32 1 1.9982 1.8426 1.0129 33 1 3.0697 1.4639 -0.3570 34 1 1.5397 -1.6852 1.3420 35 1 1.8283 -0.1155 2.1304 36 1 4.9067 -1.9315 -0.2161 37 1 3.2167 -2.4761 -0.3415 38 1 3.6967 -0.9010 -1.0175 39 1 3.8016 -1.3585 3.2295 40 1 3.5148 -2.7974 2.2215 41 1 5.1017 -1.9923 2.1916 42 1 5.8613 -0.1898 0.1314 43 1 6.3323 2.0929 1.7261 44 1 5.5172 2.6119 0.2313 45 1 7.6680 3.8878 -0.3054 46 1 8.4194 3.2378 1.1714 47 1 10.1512 3.8870 -0.4684 48 1 10.1580 2.1240 -0.2192 49 1 10.2923 2.5838 -2.6206 50 1 8.8548 3.6322 -2.5338 51 1 10.1457 2.2194 -5.5468 52 1 6.7353 0.5532 -1.7047 53 1 6.5340 2.3081 -1.9342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439910557.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:15 Heat of formation + Delta-G solvation = -51.764633 kcal Electronic energy + Delta-G solvation = -27817.894277 eV Core-core repulsion = 24302.740241 eV Total energy + Delta-G solvation = -3515.154036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.57260 -38.01865 -36.63946 -34.85000 -33.98560 -32.84796 -30.43559 -30.30887 -27.64128 -26.97175 -26.66933 -25.63201 -25.24039 -22.77830 -22.01439 -20.90920 -20.36100 -19.36137 -18.62606 -16.95542 -16.54841 -16.01813 -15.67785 -14.93588 -14.80689 -14.53158 -14.24176 -13.96456 -13.68968 -13.45485 -13.33305 -12.97810 -12.88579 -12.77828 -12.55641 -12.40570 -12.30766 -12.17895 -12.14816 -11.91511 -11.64707 -11.50000 -11.26443 -11.14224 -11.05113 -10.76356 -10.72515 -10.53043 -10.47345 -10.27557 -10.21580 -10.20609 -9.97248 -9.70590 -9.40910 -9.36060 -8.76395 -8.49064 -6.61725 -5.82495 -3.29955 2.81794 3.33941 3.37553 3.41581 3.43418 4.43578 4.45639 4.65861 4.68186 4.96502 5.00298 5.09999 5.13549 5.29437 5.31479 5.41116 5.43020 5.47451 5.50414 5.60155 5.61818 5.63827 5.71613 5.74206 5.77836 5.82669 5.90229 5.92693 5.95958 5.99984 6.00735 6.06861 6.18574 6.21555 6.24534 6.32915 6.35908 6.37272 6.49973 6.58505 6.65290 6.73171 6.79952 6.84022 6.97549 7.32911 7.58546 7.70231 7.77432 8.41796 8.44956 9.18400 9.80797 10.41908 11.25532 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.003551 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.422340 B = 7884.065676 C = 8584.391793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C -0.150 4.150 4 C -0.093 4.093 5 C -0.082 4.082 6 C -0.152 4.152 7 C -0.137 4.137 8 C 0.523 3.477 9 O -0.541 6.541 10 N -0.724 5.724 11 C 0.128 3.872 12 C -0.118 4.118 13 H 0.071 0.929 14 C -0.099 4.099 15 C -0.141 4.141 16 C 0.173 3.827 17 N -0.589 5.589 18 C -0.261 4.261 19 H 0.061 0.939 20 C 0.010 3.990 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.156 3.844 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.402 0.598 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.047 0.953 47 H 0.049 0.951 48 H 0.054 0.946 49 H 0.074 0.926 50 H 0.019 0.981 51 H 0.254 0.746 52 H 0.049 0.951 53 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.162 -5.318 12.179 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.207 4.207 4 C -0.131 4.131 5 C -0.085 4.085 6 C -0.209 4.209 7 C -0.195 4.195 8 C 0.309 3.691 9 O -0.419 6.419 10 N -0.376 5.376 11 C 0.004 3.996 12 C -0.138 4.138 13 H 0.090 0.910 14 C -0.137 4.137 15 C -0.180 4.180 16 C 0.047 3.953 17 N -0.312 5.312 18 C -0.391 4.391 19 H 0.079 0.921 20 C -0.189 4.189 21 N -0.539 5.539 22 Si 0.728 3.272 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.204 1.204 26 C 0.029 3.971 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.237 0.763 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.092 0.908 50 H 0.037 0.963 51 H 0.064 0.936 52 H 0.068 0.932 53 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -12.416 -4.578 12.428 18.154 hybrid contribution 0.799 -0.958 -0.860 1.516 sum -11.617 -5.536 11.568 17.304 Atomic orbital electron populations 1.21830 0.95468 1.01198 1.01647 1.21246 0.95482 0.97164 0.98183 1.22258 1.00216 0.95200 1.03025 1.21607 0.91882 1.00541 0.99053 1.20796 0.96802 0.93355 0.97543 1.22033 1.02080 1.01084 0.95685 1.21798 1.01509 0.98976 0.97171 1.20329 0.80804 0.89581 0.78373 1.90635 1.65393 1.42583 1.43272 1.46168 1.20602 1.15254 1.55596 1.21422 0.93349 0.84884 0.99984 1.21947 0.94003 0.99042 0.98829 0.91017 1.21330 0.97069 0.96438 0.98882 1.22155 0.95696 0.99985 1.00207 1.20678 0.95902 0.88977 0.89700 1.43949 1.15668 1.20518 1.51018 1.19054 1.32493 0.86952 1.00560 0.92135 1.25165 1.01736 0.96254 0.95791 1.70049 1.42341 1.19387 1.22122 0.86379 0.79571 0.81805 0.79469 1.21293 1.21529 1.20384 1.20889 0.89137 0.98526 0.88564 0.92817 0.92860 0.93053 0.91013 0.94071 0.90311 0.93047 0.91560 0.90612 0.91953 0.91469 0.91375 0.92062 0.91511 0.92092 0.76271 0.92224 0.91762 0.92493 0.93474 0.93211 0.92732 0.90809 0.96255 0.93600 0.93235 0.96466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.08 37.16 0.34 -0.98 16 2 C -0.10 -1.09 2.61 -90.61 -0.24 -1.32 16 3 C -0.15 -1.94 7.59 37.16 0.28 -1.66 16 4 C -0.09 -0.94 3.80 -26.73 -0.10 -1.04 16 5 C -0.08 -0.85 0.77 -155.66 -0.12 -0.97 16 6 C -0.15 -1.44 6.78 37.16 0.25 -1.19 16 7 C -0.14 -1.23 8.43 37.15 0.31 -0.92 16 8 C 0.52 6.95 4.20 -10.99 -0.05 6.91 16 9 O -0.54 -8.70 12.62 5.56 0.07 -8.63 16 10 N -0.72 -9.59 5.15 -60.29 -0.31 -9.90 16 11 C 0.13 1.86 5.07 -4.04 -0.02 1.84 16 12 C -0.12 -1.92 2.37 -90.50 -0.21 -2.13 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.10 -1.62 5.17 -26.69 -0.14 -1.76 16 15 C -0.14 -2.62 6.08 -26.63 -0.16 -2.78 16 16 C 0.17 4.04 5.28 -3.73 -0.02 4.02 16 17 N -0.59 -14.34 2.96 -172.33 -0.51 -14.84 16 18 C -0.26 -6.98 9.51 -15.06 -0.14 -7.12 16 19 H 0.06 1.58 7.89 -52.49 -0.41 1.17 16 20 C 0.01 0.29 4.86 -17.43 -0.08 0.20 16 21 N -0.90 -25.78 11.66 55.49 0.65 -25.14 16 22 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.16 3.12 5.60 -3.71 -0.02 3.09 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.76 5.98 -51.93 -0.31 0.45 16 31 H 0.04 0.50 7.97 -51.93 -0.41 0.09 16 32 H 0.08 1.14 5.97 -51.93 -0.31 0.83 16 33 H 0.05 0.74 6.20 -51.93 -0.32 0.42 16 34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.08 0.87 7.32 -51.93 -0.38 0.49 16 36 H 0.06 0.56 7.24 -51.93 -0.38 0.19 16 37 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 38 H 0.07 0.72 6.73 -51.93 -0.35 0.37 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.40 4.96 6.08 -40.82 -0.25 4.71 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.07 1.92 6.52 -51.93 -0.34 1.58 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 52 H 0.05 0.95 7.14 -51.93 -0.37 0.58 16 53 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 392.18 15.07 5.91 5.91 Total: -1.00 -29.70 392.18 -9.50 -39.19 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -10.15 Total: 3.04 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -0.12 Total: -5.81 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.17 Total: -49.88 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.07 Total: -8.63 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.70 -9.50 -39.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439910557.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.571 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds