Wall clock time and date at job start Fri Apr 10 2020 22:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47045 * 2 1 4 4 C 1.53001 * 109.47320 * 119.99936 * 2 1 3 5 5 C 1.52999 * 109.47251 * 170.09875 * 4 2 1 6 6 C 1.52999 * 109.46772 * 308.23395 * 5 4 2 7 7 C 1.52993 * 109.47114 * 188.23602 * 5 4 2 8 8 C 1.50700 * 109.47149 * 68.23372 * 5 4 2 9 9 O 1.21281 * 119.99811 * 27.05164 * 8 5 4 10 10 N 1.34775 * 119.99713 * 207.05477 * 8 5 4 11 11 C 1.46500 * 119.99746 * 180.02562 * 10 8 5 12 12 C 1.52998 * 109.47176 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.52241 * 305.07184 * 12 11 10 14 14 C 1.53039 * 109.49832 * 184.99731 * 12 11 10 15 15 C 1.53038 * 109.52779 * 178.68831 * 14 12 11 16 16 C 1.53165 * 109.32770 * 61.37191 * 15 14 12 17 17 N 1.46924 * 108.76830 * 305.35684 * 16 15 14 18 18 C 1.36930 * 120.62959 * 233.63410 * 17 16 15 19 19 H 1.08001 * 120.00142 * 146.26547 * 18 17 16 20 20 C 1.38816 * 119.99961 * 326.26043 * 18 17 16 21 21 N 1.31615 * 119.99928 * 342.65518 * 20 18 17 22 22 Si 1.86801 * 119.99883 * 162.65597 * 20 18 17 23 23 H 1.48499 * 109.47269 * 90.00158 * 22 20 18 24 24 H 1.48502 * 109.47070 * 210.00047 * 22 20 18 25 25 H 1.48501 * 109.47120 * 329.99794 * 22 20 18 26 26 C 1.46926 * 118.73798 * 53.60792 * 17 16 15 27 27 H 1.08994 * 109.46834 * 299.99932 * 1 2 3 28 28 H 1.08999 * 109.47056 * 60.00022 * 1 2 3 29 29 H 1.08997 * 109.46644 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46813 * 239.99926 * 2 1 3 31 31 H 1.08997 * 109.46778 * 320.31913 * 3 2 1 32 32 H 1.08990 * 109.46912 * 80.32026 * 3 2 1 33 33 H 1.09002 * 109.46982 * 200.32717 * 3 2 1 34 34 H 1.09007 * 109.46985 * 50.09856 * 4 2 1 35 35 H 1.09002 * 109.46825 * 290.09913 * 4 2 1 36 36 H 1.09003 * 109.47099 * 190.33087 * 6 5 4 37 37 H 1.09002 * 109.47410 * 310.32599 * 6 5 4 38 38 H 1.08998 * 109.47477 * 70.33034 * 6 5 4 39 39 H 1.09006 * 109.47083 * 299.99737 * 7 5 4 40 40 H 1.09001 * 109.47484 * 59.99921 * 7 5 4 41 41 H 1.08995 * 109.47375 * 179.97438 * 7 5 4 42 42 H 0.96996 * 120.00545 * 359.97438 * 10 8 5 43 43 H 1.09002 * 109.47686 * 59.99004 * 11 10 8 44 44 H 1.09001 * 109.47102 * 299.99383 * 11 10 8 45 45 H 1.09003 * 109.46340 * 298.70212 * 14 12 11 46 46 H 1.09004 * 109.45869 * 58.67283 * 14 12 11 47 47 H 1.09003 * 109.49550 * 181.30914 * 15 14 12 48 48 H 1.08995 * 109.49725 * 301.40639 * 15 14 12 49 49 H 1.09003 * 109.59111 * 185.56715 * 16 15 14 50 50 H 1.09005 * 109.70650 * 65.20949 * 16 15 14 51 51 H 0.97003 * 120.00005 * 179.97438 * 21 20 18 52 52 H 1.09007 * 109.58533 * 186.60439 * 26 17 16 53 53 H 1.08998 * 109.70468 * 66.25105 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5499 -0.9396 1.1314 6 6 3.8651 -1.6102 -0.2071 7 6 4.0263 -1.8363 2.2758 8 6 4.2570 0.3891 1.2065 9 8 3.7485 1.3137 1.8043 10 7 5.4544 0.5498 0.6092 11 6 6.1421 1.8413 0.6827 12 6 7.4708 1.7552 -0.0710 13 1 8.0592 0.9259 0.3216 14 6 8.2461 3.0622 0.1097 15 6 9.5895 2.9646 -0.6169 16 6 9.3422 2.7524 -2.1135 17 7 8.4757 1.5788 -2.2877 18 6 8.8508 0.5507 -3.1106 19 1 8.5754 -0.4647 -2.8661 20 6 9.5848 0.8133 -4.2591 21 7 9.6325 2.0358 -4.7444 22 14 10.5050 -0.5683 -5.1158 23 1 9.6193 -1.2012 -6.1258 24 1 11.7092 -0.0183 -5.7887 25 1 10.9181 -1.5836 -4.1140 26 6 7.1993 1.5291 -1.5616 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.4155 2.0486 -0.6562 32 1 1.9982 1.8426 1.0129 33 1 3.0697 1.4639 -0.3570 34 1 1.5397 -1.6852 1.3420 35 1 1.8283 -0.1155 2.1304 36 1 4.9067 -1.9315 -0.2161 37 1 3.2167 -2.4761 -0.3415 38 1 3.6967 -0.9010 -1.0175 39 1 3.8016 -1.3585 3.2295 40 1 3.5148 -2.7974 2.2215 41 1 5.1017 -1.9923 2.1916 42 1 5.8613 -0.1898 0.1314 43 1 6.3323 2.0929 1.7261 44 1 5.5172 2.6119 0.2313 45 1 7.6680 3.8878 -0.3054 46 1 8.4194 3.2378 1.1714 47 1 10.1512 3.8870 -0.4684 48 1 10.1580 2.1240 -0.2192 49 1 10.2923 2.5838 -2.6206 50 1 8.8548 3.6322 -2.5338 51 1 10.1457 2.2194 -5.5468 52 1 6.7353 0.5532 -1.7047 53 1 6.5340 2.3081 -1.9342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439910557.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:14 Heat of formation + Delta-G solvation = -67.697689 kcal Electronic energy + Delta-G solvation = -27818.585187 eV Core-core repulsion = 24302.740241 eV Total energy + Delta-G solvation = -3515.844945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.58614 -39.52051 -37.67191 -36.19764 -35.08453 -34.35475 -32.29494 -31.79709 -28.41664 -27.83864 -27.52696 -27.24499 -26.83516 -24.01252 -23.61594 -22.33961 -21.32827 -20.79649 -19.73469 -18.63724 -17.74318 -17.09478 -16.85633 -16.69535 -16.00046 -15.80178 -15.62203 -15.16160 -15.00138 -14.76283 -14.55186 -14.34573 -14.02920 -13.83141 -13.76012 -13.66775 -13.56496 -13.22376 -13.01548 -12.97036 -12.88393 -12.81063 -12.51274 -12.43744 -12.40692 -12.28514 -12.01337 -11.98503 -11.83002 -11.63192 -11.57893 -11.33075 -11.31210 -11.10211 -11.06928 -10.54680 -10.45989 -9.90906 -8.61217 -7.87787 -5.38913 1.46501 1.48549 1.57957 1.77980 2.32861 2.50788 3.27420 3.59181 3.61818 3.80314 3.88590 3.99274 4.01432 4.06853 4.12936 4.16777 4.29858 4.39407 4.46275 4.57882 4.61471 4.71495 4.75748 4.78223 4.81933 4.87169 4.87886 4.89636 4.91941 4.95366 4.99880 5.00445 5.08103 5.09800 5.12121 5.21319 5.22929 5.28881 5.33004 5.36371 5.38217 5.41104 5.45073 5.49640 5.54496 5.66540 5.69466 5.73821 6.40894 6.64754 7.15397 7.36637 7.84610 8.41017 9.18036 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.003551 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.422340 B = 7884.065676 C = 8584.391793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.144 4.144 4 C -0.090 4.090 5 C -0.078 4.078 6 C -0.150 4.150 7 C -0.134 4.134 8 C 0.520 3.480 9 O -0.572 6.572 10 N -0.723 5.723 11 C 0.139 3.861 12 C -0.100 4.100 13 H 0.076 0.924 14 C -0.097 4.097 15 C -0.129 4.129 16 C 0.178 3.822 17 N -0.607 5.607 18 C -0.268 4.268 19 H 0.067 0.933 20 C -0.044 4.044 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.283 1.283 24 H -0.295 1.295 25 H -0.267 1.267 26 C 0.156 3.844 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.030 0.970 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.407 0.593 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.055 0.945 49 H 0.040 0.960 50 H -0.007 1.007 51 H 0.250 0.750 52 H 0.054 0.946 53 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.765 -7.502 13.646 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.201 4.201 4 C -0.128 4.128 5 C -0.081 4.081 6 C -0.207 4.207 7 C -0.192 4.192 8 C 0.308 3.692 9 O -0.451 6.451 10 N -0.375 5.375 11 C 0.015 3.985 12 C -0.120 4.120 13 H 0.094 0.906 14 C -0.135 4.135 15 C -0.168 4.168 16 C 0.052 3.948 17 N -0.330 5.330 18 C -0.399 4.399 19 H 0.085 0.915 20 C -0.240 4.240 21 N -0.578 5.578 22 Si 0.792 3.208 23 H -0.210 1.210 24 H -0.221 1.221 25 H -0.191 1.191 26 C 0.031 3.969 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.244 0.756 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.058 0.942 50 H 0.011 0.989 51 H 0.058 0.942 52 H 0.073 0.927 53 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -13.031 -6.784 13.919 20.238 hybrid contribution 0.934 -0.228 -1.323 1.635 sum -12.097 -7.012 12.596 18.819 Atomic orbital electron populations 1.21805 0.94174 1.02336 1.01549 1.21253 0.96581 0.95416 0.98731 1.22171 0.99077 0.97171 1.01687 1.21602 0.91849 1.01391 0.97916 1.20833 0.96603 0.91833 0.98801 1.22035 1.02948 1.01326 0.94419 1.21806 1.01927 0.99512 0.95936 1.20932 0.80439 0.90456 0.77389 1.90629 1.65999 1.43912 1.44598 1.46151 1.20792 1.14865 1.55684 1.21191 0.92114 0.85348 0.99874 1.21708 0.95018 0.99346 0.95922 0.90553 1.21334 0.95544 0.96147 1.00483 1.21984 0.97355 1.01029 0.96432 1.20524 0.93830 0.87722 0.92725 1.44225 1.17339 1.20181 1.51265 1.19443 1.31897 0.87891 1.00632 0.91548 1.25935 1.02943 0.98373 0.96755 1.70203 1.43503 1.21460 1.22636 0.85346 0.77895 0.79182 0.78421 1.20998 1.22121 1.19128 1.20974 0.87189 0.98239 0.90546 0.93030 0.92913 0.91270 0.90638 0.94037 0.92051 0.95103 0.89006 0.92202 0.91454 0.89393 0.92856 0.92835 0.89205 0.91877 0.75638 0.91324 0.93145 0.92907 0.90179 0.91190 0.92589 0.94172 0.98934 0.94153 0.92719 0.98200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.08 71.98 0.65 -1.69 16 2 C -0.10 -2.03 2.61 -10.79 -0.03 -2.06 16 3 C -0.14 -3.76 7.59 71.98 0.55 -3.22 16 4 C -0.09 -1.65 3.80 30.59 0.12 -1.53 16 5 C -0.08 -1.47 0.77 -52.93 -0.04 -1.51 16 6 C -0.15 -2.51 6.78 71.98 0.49 -2.02 16 7 C -0.13 -2.06 8.43 71.98 0.61 -1.45 16 8 C 0.52 13.41 4.20 87.66 0.37 13.78 16 9 O -0.57 -18.35 12.62 -3.03 -0.04 -18.39 16 10 N -0.72 -18.41 5.15 -463.06 -2.39 -20.80 16 11 C 0.14 3.91 5.07 86.38 0.44 4.34 16 12 C -0.10 -3.12 2.37 -10.72 -0.03 -3.15 16 13 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 14 C -0.10 -3.00 5.17 30.62 0.16 -2.84 16 15 C -0.13 -4.65 6.08 30.66 0.19 -4.46 16 16 C 0.18 8.50 5.28 86.35 0.46 8.96 16 17 N -0.61 -29.91 2.96 -699.14 -2.07 -31.98 16 18 C -0.27 -14.44 9.51 84.04 0.80 -13.64 16 19 H 0.07 3.43 7.89 -2.91 -0.02 3.40 16 20 C -0.04 -2.42 4.86 84.86 0.41 -2.00 16 21 N -0.93 -55.34 11.66 21.65 0.25 -55.09 16 22 Si 0.96 43.95 29.59 68.60 2.03 45.98 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 C 0.16 6.27 5.60 86.36 0.48 6.75 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.47 5.98 -2.39 -0.01 1.45 16 31 H 0.04 1.03 7.97 -2.39 -0.02 1.01 16 32 H 0.06 1.82 5.97 -2.39 -0.01 1.80 16 33 H 0.03 0.90 6.20 -2.39 -0.01 0.89 16 34 H 0.09 1.23 8.10 -2.38 -0.02 1.21 16 35 H 0.06 1.31 7.32 -2.39 -0.02 1.30 16 36 H 0.07 1.06 7.24 -2.39 -0.02 1.04 16 37 H 0.09 1.12 8.11 -2.39 -0.02 1.10 16 38 H 0.05 1.06 6.73 -2.39 -0.02 1.04 16 39 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 42 H 0.41 9.48 6.08 -92.71 -0.56 8.92 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.04 2.16 6.52 -2.39 -0.02 2.14 16 50 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 51 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 52 H 0.05 2.09 7.14 -2.38 -0.02 2.08 16 53 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 Total: -1.00 -65.85 392.18 3.70 -62.15 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.29 Total: 23.86 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 5.62 Total: -5.73 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -4.20 Total: -107.87 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.04 Total: -18.39 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.85 3.70 -62.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439910557.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.547 kcal (2) G-P(sol) polarization free energy of solvation -65.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds