Wall clock time and date at job start Fri Apr 10 2020 22:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47356 * 2 1 4 4 C 1.53004 * 109.46685 * 119.99853 * 2 1 3 5 5 C 1.53005 * 109.47304 * 169.30900 * 4 2 1 6 6 C 1.53006 * 109.46826 * 307.42293 * 5 4 2 7 7 C 1.52992 * 109.47650 * 187.41699 * 5 4 2 8 8 C 1.50705 * 109.46878 * 67.41602 * 5 4 2 9 9 O 1.21287 * 119.99831 * 29.11390 * 8 5 4 10 10 N 1.34770 * 120.00122 * 209.38635 * 8 5 4 11 11 C 1.46498 * 119.99978 * 179.72737 * 10 8 5 12 12 C 1.53005 * 109.47279 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.49512 * 55.06055 * 12 11 10 14 14 C 1.53039 * 109.49827 * 175.16145 * 12 11 10 15 15 C 1.53045 * 109.53575 * 181.31537 * 14 12 11 16 16 C 1.53187 * 109.31025 * 298.63306 * 15 14 12 17 17 N 1.46926 * 108.77695 * 54.63875 * 16 15 14 18 18 C 1.36940 * 120.63093 * 126.36817 * 17 16 15 19 19 H 1.08001 * 119.99891 * 331.07649 * 18 17 16 20 20 C 1.38814 * 119.99932 * 151.08392 * 18 17 16 21 21 N 1.31618 * 119.99869 * 344.51463 * 20 18 17 22 22 Si 1.86800 * 120.00015 * 164.52197 * 20 18 17 23 23 H 1.48494 * 109.47208 * 89.99600 * 22 20 18 24 24 H 1.48496 * 109.47003 * 209.99609 * 22 20 18 25 25 H 1.48499 * 109.46849 * 329.99800 * 22 20 18 26 26 C 1.46922 * 118.73735 * 306.38956 * 17 16 15 27 27 H 1.08995 * 109.47321 * 300.00031 * 1 2 3 28 28 H 1.08994 * 109.46755 * 60.00043 * 1 2 3 29 29 H 1.08999 * 109.47199 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47029 * 239.99246 * 2 1 3 31 31 H 1.09002 * 109.46954 * 75.61944 * 3 2 1 32 32 H 1.08993 * 109.47126 * 195.62124 * 3 2 1 33 33 H 1.08994 * 109.46968 * 315.62516 * 3 2 1 34 34 H 1.09005 * 109.47612 * 49.31275 * 4 2 1 35 35 H 1.08998 * 109.47590 * 289.30925 * 4 2 1 36 36 H 1.09001 * 109.46692 * 188.54278 * 6 5 4 37 37 H 1.08993 * 109.46746 * 308.54316 * 6 5 4 38 38 H 1.09000 * 109.47211 * 68.54321 * 6 5 4 39 39 H 1.09002 * 109.47351 * 300.00757 * 7 5 4 40 40 H 1.09008 * 109.46702 * 60.00510 * 7 5 4 41 41 H 1.09000 * 109.47157 * 179.97438 * 7 5 4 42 42 H 0.96999 * 120.00201 * 359.73104 * 10 8 5 43 43 H 1.09004 * 109.47166 * 300.00257 * 11 10 8 44 44 H 1.08997 * 109.47436 * 60.00436 * 11 10 8 45 45 H 1.09001 * 109.46058 * 301.33063 * 14 12 11 46 46 H 1.08996 * 109.46120 * 61.29224 * 14 12 11 47 47 H 1.08998 * 109.49295 * 178.68447 * 15 14 12 48 48 H 1.08996 * 109.49769 * 58.58559 * 15 14 12 49 49 H 1.08997 * 109.59020 * 294.84965 * 16 15 14 50 50 H 1.09005 * 109.70118 * 174.49463 * 16 15 14 51 51 H 0.96997 * 119.99798 * 180.02562 * 21 20 18 52 52 H 1.09005 * 109.58794 * 293.82016 * 26 17 16 53 53 H 1.09001 * 109.58636 * 173.39584 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5464 -0.9573 1.1229 6 6 3.8434 -1.6558 -0.2056 7 6 4.0237 -1.8373 2.2798 8 6 4.2675 0.3653 1.1672 9 8 3.7914 1.2953 1.7833 10 7 5.4386 0.5164 0.5176 11 6 6.1365 1.8039 0.5557 12 6 7.4299 1.7072 -0.2561 13 1 7.2007 1.3680 -1.2663 14 6 8.0984 3.0824 -0.3176 15 6 9.3752 2.9937 -1.1569 16 6 10.3483 2.0121 -0.4965 17 7 9.6639 0.7267 -0.3016 18 6 10.2111 -0.4345 -0.7786 19 1 10.8444 -0.4136 -1.6532 20 6 9.9516 -1.6384 -0.1380 21 7 9.4468 -1.6416 1.0775 22 14 10.3189 -3.2538 -1.0012 23 1 11.7092 -3.6747 -0.6929 24 1 9.3705 -4.2942 -0.5289 25 1 10.1691 -3.0764 -2.4679 26 6 8.3810 0.7109 0.4143 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.9206 1.8701 0.9955 32 1 3.0942 1.4551 -0.2767 33 1 1.4687 2.0298 -0.7187 34 1 1.5294 -1.6791 1.3498 35 1 1.8407 -0.1093 2.1290 36 1 4.8899 -1.9597 -0.2302 37 1 3.2072 -2.5353 -0.3038 38 1 3.6447 -0.9699 -1.0291 39 1 3.8120 -1.3397 3.2262 40 1 3.5022 -2.7940 2.2476 41 1 5.0968 -2.0058 2.1894 42 1 5.8193 -0.2272 0.0248 43 1 5.4971 2.5767 0.1290 44 1 6.3738 2.0582 1.5887 45 1 7.4142 3.7989 -0.7721 46 1 8.3491 3.4097 0.6914 47 1 9.8383 3.9784 -1.2196 48 1 9.1282 2.6428 -2.1588 49 1 10.6667 2.4065 0.4684 50 1 11.2180 1.8694 -1.1379 51 1 9.2659 -2.4829 1.5252 52 1 8.5389 0.9993 1.4536 53 1 7.9512 -0.2899 0.3719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439910558.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:18 Heat of formation + Delta-G solvation = -50.148423 kcal Electronic energy + Delta-G solvation = -28178.603258 eV Core-core repulsion = 24663.519306 eV Total energy + Delta-G solvation = -3515.083952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.41576 -37.95841 -36.53183 -34.66489 -33.86938 -32.97127 -30.76366 -29.80045 -27.48181 -26.94346 -26.55508 -25.59246 -25.26076 -22.67437 -22.01445 -20.77074 -20.25939 -19.27432 -18.52547 -16.88977 -16.56285 -15.87600 -15.55262 -14.98217 -14.80753 -14.18726 -14.07826 -13.82971 -13.71267 -13.57763 -13.06691 -12.91835 -12.82522 -12.78617 -12.42725 -12.30129 -12.26705 -12.13771 -11.96505 -11.87150 -11.50409 -11.46832 -11.24120 -11.03063 -10.99797 -10.73897 -10.70806 -10.51343 -10.38607 -10.25877 -10.23484 -10.10320 -9.92774 -9.66538 -9.44328 -9.22758 -8.59588 -8.50539 -6.68177 -5.82868 -3.26675 3.00408 3.32268 3.40093 3.41984 3.57436 4.44738 4.57183 4.79131 4.83637 5.01373 5.12018 5.18860 5.19772 5.32141 5.44105 5.55828 5.57504 5.59317 5.59400 5.62256 5.68293 5.74203 5.80807 5.83968 5.87055 5.90670 5.93048 5.98390 6.05342 6.08834 6.13222 6.18525 6.27694 6.30037 6.30630 6.31938 6.39164 6.43356 6.49376 6.58872 6.65822 6.78263 6.85674 6.90183 7.00757 7.30330 7.59787 7.74986 7.91488 8.41117 8.60217 9.17531 9.80397 10.38500 11.24927 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.004407 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.810430 B = 6351.822882 C = 7707.936981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.093 4.093 5 C -0.081 4.081 6 C -0.152 4.152 7 C -0.139 4.139 8 C 0.525 3.475 9 O -0.547 6.547 10 N -0.720 5.720 11 C 0.131 3.869 12 C -0.128 4.128 13 H 0.068 0.932 14 C -0.100 4.100 15 C -0.133 4.133 16 C 0.143 3.857 17 N -0.593 5.593 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.899 3.101 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.181 3.819 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.404 0.596 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.046 0.954 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.057 0.943 49 H 0.017 0.983 50 H 0.052 0.948 51 H 0.253 0.747 52 H 0.018 0.982 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.655 2.627 -2.149 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.203 4.203 4 C -0.131 4.131 5 C -0.084 4.084 6 C -0.209 4.209 7 C -0.196 4.196 8 C 0.312 3.688 9 O -0.425 6.425 10 N -0.372 5.372 11 C 0.007 3.993 12 C -0.148 4.148 13 H 0.086 0.914 14 C -0.138 4.138 15 C -0.172 4.172 16 C 0.017 3.983 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.728 3.272 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.055 3.945 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.240 0.760 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.035 0.965 50 H 0.071 0.929 51 H 0.063 0.937 52 H 0.036 0.964 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.990 3.144 -1.610 14.429 hybrid contribution 0.485 -1.230 -0.612 1.457 sum -13.505 1.914 -2.223 13.820 Atomic orbital electron populations 1.21825 0.95536 1.01214 1.01548 1.21247 0.95391 0.97091 0.98343 1.22183 1.00491 0.95230 1.02383 1.21599 0.92134 1.00459 0.98869 1.20780 0.96450 0.93541 0.97635 1.22038 1.02508 1.00688 0.95711 1.21804 1.02214 0.98775 0.96836 1.20279 0.80717 0.89454 0.78390 1.90642 1.66456 1.42016 1.43433 1.46159 1.22428 1.15352 1.53222 1.21351 0.92706 0.84601 1.00661 1.22138 0.94513 0.98266 0.99915 0.91368 1.21331 0.96702 0.95823 0.99955 1.21985 0.96829 0.98896 0.99474 1.20932 0.93598 0.86979 0.96829 1.44027 1.19215 1.01929 1.66318 1.19185 1.27747 0.84690 1.06555 0.91808 1.25051 1.01101 0.98269 0.95071 1.70027 1.48362 1.25316 1.10908 0.86355 0.77829 0.83738 0.79230 1.21380 1.21520 1.20500 1.20785 0.84277 0.97375 0.92097 0.92801 0.92999 0.93023 0.91093 0.90932 0.92748 0.94303 0.91590 0.90609 0.91622 0.91581 0.91776 0.92068 0.91698 0.91429 0.75965 0.92583 0.91946 0.93487 0.92529 0.93115 0.92468 0.96540 0.92944 0.93664 0.96423 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.11 37.16 0.34 -1.02 16 2 C -0.10 -1.14 2.64 -90.62 -0.24 -1.38 16 3 C -0.15 -1.91 7.54 37.16 0.28 -1.63 16 4 C -0.09 -1.07 3.81 -26.73 -0.10 -1.17 16 5 C -0.08 -1.02 0.77 -155.66 -0.12 -1.14 16 6 C -0.15 -1.73 6.84 37.16 0.25 -1.48 16 7 C -0.14 -1.73 8.44 37.15 0.31 -1.41 16 8 C 0.53 8.17 4.10 -10.99 -0.04 8.13 16 9 O -0.55 -9.83 12.86 5.55 0.07 -9.75 16 10 N -0.72 -11.43 5.15 -60.29 -0.31 -11.74 16 11 C 0.13 2.17 5.07 -4.04 -0.02 2.15 16 12 C -0.13 -2.28 2.38 -90.50 -0.22 -2.50 16 13 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 14 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 15 C -0.13 -2.25 6.08 -26.61 -0.16 -2.42 16 16 C 0.14 2.95 6.52 -3.71 -0.02 2.93 16 17 N -0.59 -14.37 2.99 -172.32 -0.52 -14.88 16 18 C -0.25 -6.69 9.58 -15.06 -0.14 -6.84 16 19 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 20 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 21 N -0.90 -24.96 11.16 55.49 0.62 -24.34 16 22 Si 0.90 20.84 29.58 -169.99 -5.03 15.81 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 26 C 0.18 4.06 4.37 -3.71 -0.02 4.04 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.77 5.91 -51.93 -0.31 0.46 16 31 H 0.07 1.07 6.53 -51.93 -0.34 0.73 16 32 H 0.05 0.80 5.72 -51.93 -0.30 0.50 16 33 H 0.04 0.46 8.05 -51.93 -0.42 0.04 16 34 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.08 0.98 7.38 -51.93 -0.38 0.60 16 36 H 0.06 0.80 7.18 -51.93 -0.37 0.43 16 37 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.06 0.72 6.61 -51.93 -0.34 0.38 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.40 6.39 5.95 -40.82 -0.24 6.15 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 51 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 52 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 53 H 0.09 2.12 5.27 -51.93 -0.27 1.85 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -28.80 391.48 -9.51 -38.31 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -10.12 Total: 6.22 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -0.13 Total: -5.52 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.21 Total: -50.97 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.80 -9.51 -38.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439910558.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.839 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds