Wall clock time and date at job start Fri Apr 10 2020 22:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47356 * 2 1 4 4 C 1.53004 * 109.46685 * 119.99853 * 2 1 3 5 5 C 1.53005 * 109.47304 * 169.30900 * 4 2 1 6 6 C 1.53006 * 109.46826 * 307.42293 * 5 4 2 7 7 C 1.52992 * 109.47650 * 187.41699 * 5 4 2 8 8 C 1.50705 * 109.46878 * 67.41602 * 5 4 2 9 9 O 1.21287 * 119.99831 * 29.11390 * 8 5 4 10 10 N 1.34770 * 120.00122 * 209.38635 * 8 5 4 11 11 C 1.46498 * 119.99978 * 179.72737 * 10 8 5 12 12 C 1.53005 * 109.47279 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.49512 * 55.06055 * 12 11 10 14 14 C 1.53039 * 109.49827 * 175.16145 * 12 11 10 15 15 C 1.53045 * 109.53575 * 181.31537 * 14 12 11 16 16 C 1.53187 * 109.31025 * 298.63306 * 15 14 12 17 17 N 1.46926 * 108.77695 * 54.63875 * 16 15 14 18 18 C 1.36940 * 120.63093 * 126.36817 * 17 16 15 19 19 H 1.08001 * 119.99891 * 331.07649 * 18 17 16 20 20 C 1.38814 * 119.99932 * 151.08392 * 18 17 16 21 21 N 1.31618 * 119.99869 * 344.51463 * 20 18 17 22 22 Si 1.86800 * 120.00015 * 164.52197 * 20 18 17 23 23 H 1.48494 * 109.47208 * 89.99600 * 22 20 18 24 24 H 1.48496 * 109.47003 * 209.99609 * 22 20 18 25 25 H 1.48499 * 109.46849 * 329.99800 * 22 20 18 26 26 C 1.46922 * 118.73735 * 306.38956 * 17 16 15 27 27 H 1.08995 * 109.47321 * 300.00031 * 1 2 3 28 28 H 1.08994 * 109.46755 * 60.00043 * 1 2 3 29 29 H 1.08999 * 109.47199 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47029 * 239.99246 * 2 1 3 31 31 H 1.09002 * 109.46954 * 75.61944 * 3 2 1 32 32 H 1.08993 * 109.47126 * 195.62124 * 3 2 1 33 33 H 1.08994 * 109.46968 * 315.62516 * 3 2 1 34 34 H 1.09005 * 109.47612 * 49.31275 * 4 2 1 35 35 H 1.08998 * 109.47590 * 289.30925 * 4 2 1 36 36 H 1.09001 * 109.46692 * 188.54278 * 6 5 4 37 37 H 1.08993 * 109.46746 * 308.54316 * 6 5 4 38 38 H 1.09000 * 109.47211 * 68.54321 * 6 5 4 39 39 H 1.09002 * 109.47351 * 300.00757 * 7 5 4 40 40 H 1.09008 * 109.46702 * 60.00510 * 7 5 4 41 41 H 1.09000 * 109.47157 * 179.97438 * 7 5 4 42 42 H 0.96999 * 120.00201 * 359.73104 * 10 8 5 43 43 H 1.09004 * 109.47166 * 300.00257 * 11 10 8 44 44 H 1.08997 * 109.47436 * 60.00436 * 11 10 8 45 45 H 1.09001 * 109.46058 * 301.33063 * 14 12 11 46 46 H 1.08996 * 109.46120 * 61.29224 * 14 12 11 47 47 H 1.08998 * 109.49295 * 178.68447 * 15 14 12 48 48 H 1.08996 * 109.49769 * 58.58559 * 15 14 12 49 49 H 1.08997 * 109.59020 * 294.84965 * 16 15 14 50 50 H 1.09005 * 109.70118 * 174.49463 * 16 15 14 51 51 H 0.96997 * 119.99798 * 180.02562 * 21 20 18 52 52 H 1.09005 * 109.58794 * 293.82016 * 26 17 16 53 53 H 1.09001 * 109.58636 * 173.39584 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5464 -0.9573 1.1229 6 6 3.8434 -1.6558 -0.2056 7 6 4.0237 -1.8373 2.2798 8 6 4.2675 0.3653 1.1672 9 8 3.7914 1.2953 1.7833 10 7 5.4386 0.5164 0.5176 11 6 6.1365 1.8039 0.5557 12 6 7.4299 1.7072 -0.2561 13 1 7.2007 1.3680 -1.2663 14 6 8.0984 3.0824 -0.3176 15 6 9.3752 2.9937 -1.1569 16 6 10.3483 2.0121 -0.4965 17 7 9.6639 0.7267 -0.3016 18 6 10.2111 -0.4345 -0.7786 19 1 10.8444 -0.4136 -1.6532 20 6 9.9516 -1.6384 -0.1380 21 7 9.4468 -1.6416 1.0775 22 14 10.3189 -3.2538 -1.0012 23 1 11.7092 -3.6747 -0.6929 24 1 9.3705 -4.2942 -0.5289 25 1 10.1691 -3.0764 -2.4679 26 6 8.3810 0.7109 0.4143 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.9206 1.8701 0.9955 32 1 3.0942 1.4551 -0.2767 33 1 1.4687 2.0298 -0.7187 34 1 1.5294 -1.6791 1.3498 35 1 1.8407 -0.1093 2.1290 36 1 4.8899 -1.9597 -0.2302 37 1 3.2072 -2.5353 -0.3038 38 1 3.6447 -0.9699 -1.0291 39 1 3.8120 -1.3397 3.2262 40 1 3.5022 -2.7940 2.2476 41 1 5.0968 -2.0058 2.1894 42 1 5.8193 -0.2272 0.0248 43 1 5.4971 2.5767 0.1290 44 1 6.3738 2.0582 1.5887 45 1 7.4142 3.7989 -0.7721 46 1 8.3491 3.4097 0.6914 47 1 9.8383 3.9784 -1.2196 48 1 9.1282 2.6428 -2.1588 49 1 10.6667 2.4065 0.4684 50 1 11.2180 1.8694 -1.1379 51 1 9.2659 -2.4829 1.5252 52 1 8.5389 0.9993 1.4536 53 1 7.9512 -0.2899 0.3719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439910558.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:17 Heat of formation + Delta-G solvation = -65.124234 kcal Electronic energy + Delta-G solvation = -28179.252658 eV Core-core repulsion = 24663.519306 eV Total energy + Delta-G solvation = -3515.733352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.60403 -39.50711 -37.66863 -36.10880 -35.07963 -34.53531 -32.40470 -31.49078 -28.43977 -27.85841 -27.55201 -27.27490 -26.85843 -24.06566 -23.57708 -22.23563 -21.30860 -20.75427 -19.76113 -18.69945 -17.78824 -17.12038 -16.96920 -16.59459 -15.92513 -15.82380 -15.40317 -15.15707 -15.09231 -14.79920 -14.52554 -14.31811 -14.03561 -13.82408 -13.79255 -13.67828 -13.57165 -13.24901 -13.03187 -12.91862 -12.86473 -12.86033 -12.53429 -12.47641 -12.40753 -12.22464 -11.99595 -11.98138 -11.80146 -11.62232 -11.55859 -11.31879 -11.28994 -11.11244 -11.07538 -10.53996 -10.48339 -9.91726 -8.63735 -7.84577 -5.32091 1.47498 1.49777 1.58890 1.76068 2.33998 2.52559 3.28501 3.58216 3.62236 3.78455 3.86382 4.00503 4.07802 4.12711 4.13172 4.17532 4.27763 4.35297 4.44996 4.55487 4.64009 4.67258 4.73379 4.80597 4.81247 4.84989 4.87053 4.88298 4.89745 4.94597 4.98674 5.03239 5.06687 5.11286 5.14421 5.19500 5.23045 5.25423 5.32520 5.36174 5.37770 5.40258 5.46711 5.53398 5.56286 5.66141 5.69061 5.78815 6.41598 6.62760 7.17424 7.33694 7.87594 8.40763 9.20699 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.004407 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.810430 B = 6351.822882 C = 7707.936981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C -0.141 4.141 4 C -0.088 4.088 5 C -0.078 4.078 6 C -0.148 4.148 7 C -0.136 4.136 8 C 0.522 3.478 9 O -0.574 6.574 10 N -0.722 5.722 11 C 0.140 3.860 12 C -0.111 4.111 13 H 0.069 0.931 14 C -0.099 4.099 15 C -0.121 4.121 16 C 0.135 3.865 17 N -0.611 5.611 18 C -0.266 4.266 19 H 0.063 0.937 20 C -0.042 4.042 21 N -0.930 5.930 22 Si 0.962 3.038 23 H -0.290 1.290 24 H -0.288 1.288 25 H -0.270 1.270 26 C 0.193 3.807 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.404 0.596 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.082 0.918 48 H 0.057 0.943 49 H 0.008 0.992 50 H 0.052 0.948 51 H 0.250 0.750 52 H -0.017 1.017 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.076 2.336 -3.872 15.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.198 4.198 4 C -0.126 4.126 5 C -0.081 4.081 6 C -0.206 4.206 7 C -0.194 4.194 8 C 0.310 3.690 9 O -0.454 6.454 10 N -0.373 5.373 11 C 0.015 3.985 12 C -0.131 4.131 13 H 0.087 0.913 14 C -0.137 4.137 15 C -0.160 4.160 16 C 0.010 3.990 17 N -0.335 5.335 18 C -0.396 4.396 19 H 0.081 0.919 20 C -0.238 4.238 21 N -0.576 5.576 22 Si 0.790 3.210 23 H -0.217 1.217 24 H -0.214 1.214 25 H -0.195 1.195 26 C 0.067 3.933 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.241 0.759 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.071 0.929 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.026 0.974 50 H 0.070 0.930 51 H 0.059 0.941 52 H 0.001 0.999 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.406 2.875 -3.349 16.025 hybrid contribution 0.999 -1.086 -0.028 1.476 sum -14.406 1.789 -3.378 14.905 Atomic orbital electron populations 1.21793 0.93959 1.02328 1.01692 1.21252 0.96691 0.95555 0.98390 1.22096 0.99551 0.96934 1.01206 1.21587 0.91187 1.01446 0.98380 1.20835 0.96964 0.91811 0.98522 1.22023 1.02287 1.01484 0.94763 1.21798 1.01247 0.99987 0.96352 1.20876 0.80349 0.90362 0.77435 1.90632 1.67029 1.43260 1.44467 1.46207 1.22634 1.15086 1.53394 1.21199 0.92396 0.85456 0.99417 1.21900 0.93916 0.98077 0.99255 0.91285 1.21357 0.97022 0.95224 1.00092 1.21864 0.96072 0.99224 0.98815 1.21116 0.94630 0.86468 0.96800 1.44318 1.20139 1.02655 1.66344 1.19483 1.27674 0.85905 1.06571 0.91904 1.25733 1.01371 1.01098 0.95591 1.70181 1.49541 1.25666 1.12176 0.85377 0.77163 0.79930 0.78571 1.21678 1.21414 1.19531 1.20542 0.84742 0.97394 0.90657 0.93214 0.92363 0.91419 0.90209 0.93113 0.94617 0.93324 0.89073 0.92407 0.92836 0.89158 0.91549 0.92949 0.88958 0.93432 0.75942 0.91236 0.93717 0.90325 0.92906 0.89916 0.92421 0.97389 0.92989 0.94092 0.99874 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.11 71.98 0.66 -1.65 16 2 C -0.10 -2.05 2.64 -10.79 -0.03 -2.08 16 3 C -0.14 -3.60 7.54 71.98 0.54 -3.06 16 4 C -0.09 -1.89 3.81 30.60 0.12 -1.78 16 5 C -0.08 -1.92 0.77 -52.93 -0.04 -1.96 16 6 C -0.15 -3.15 6.84 71.98 0.49 -2.65 16 7 C -0.14 -3.33 8.44 71.98 0.61 -2.72 16 8 C 0.52 16.46 4.10 87.66 0.36 16.82 16 9 O -0.57 -21.09 12.86 -3.05 -0.04 -21.13 16 10 N -0.72 -23.40 5.15 -463.05 -2.38 -25.78 16 11 C 0.14 4.67 5.07 86.38 0.44 5.11 16 12 C -0.11 -3.95 2.38 -10.72 -0.03 -3.98 16 13 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.10 -3.08 5.17 30.62 0.16 -2.92 16 15 C -0.12 -3.86 6.08 30.67 0.19 -3.67 16 16 C 0.14 5.56 6.52 86.36 0.56 6.12 16 17 N -0.61 -30.12 2.99 -699.10 -2.09 -32.21 16 18 C -0.27 -14.31 9.58 84.03 0.81 -13.50 16 19 H 0.06 3.32 7.88 -2.91 -0.02 3.30 16 20 C -0.04 -2.27 4.95 84.86 0.42 -1.85 16 21 N -0.93 -52.93 11.16 21.65 0.24 -52.69 16 22 Si 0.96 43.14 29.58 68.60 2.03 45.17 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 24 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 26 C 0.19 8.91 4.37 86.36 0.38 9.29 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.51 5.91 -2.39 -0.01 1.50 16 31 H 0.05 1.51 6.53 -2.39 -0.02 1.50 16 32 H 0.03 1.02 5.72 -2.39 -0.01 1.01 16 33 H 0.05 1.10 8.05 -2.39 -0.02 1.09 16 34 H 0.09 1.51 8.10 -2.38 -0.02 1.49 16 35 H 0.06 1.47 7.38 -2.39 -0.02 1.45 16 36 H 0.05 1.27 7.18 -2.39 -0.02 1.25 16 37 H 0.09 1.48 8.13 -2.39 -0.02 1.46 16 38 H 0.07 1.38 6.61 -2.39 -0.02 1.36 16 39 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.40 13.12 5.95 -92.71 -0.55 12.57 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 50 H 0.05 2.09 7.93 -2.38 -0.02 2.07 16 51 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 52 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 53 H 0.06 3.25 5.27 -2.39 -0.01 3.23 16 Total: -1.00 -63.59 391.48 3.68 -59.90 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.30 Total: 31.22 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 5.63 Total: -4.48 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -4.23 Total: -110.68 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.04 Total: -21.13 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -63.59 3.68 -59.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439910558.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.220 kcal (2) G-P(sol) polarization free energy of solvation -63.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds