Wall clock time and date at job start Fri Apr 10 2020 22:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46896 * 2 1 4 4 C 1.52999 * 109.46932 * 119.99592 * 2 1 3 5 5 C 1.53003 * 109.46921 * 65.55222 * 4 2 1 6 6 C 1.53000 * 109.46914 * 65.74109 * 5 4 2 7 7 C 1.53004 * 109.46970 * 184.83937 * 6 5 4 8 8 C 1.52997 * 109.47083 * 65.93261 * 7 6 5 9 9 C 1.52995 * 109.46952 * 185.93614 * 7 6 5 10 10 C 1.50708 * 109.46887 * 185.73971 * 5 4 2 11 11 O 1.21274 * 119.99803 * 263.39053 * 10 5 4 12 12 N 1.34779 * 119.99733 * 83.39093 * 10 5 4 13 13 C 1.46957 * 120.59111 * 184.74789 * 12 10 5 14 14 C 1.53372 * 108.63855 * 235.25279 * 13 12 10 15 15 N 1.46971 * 108.63185 * 310.57848 * 14 13 12 16 16 C 1.36933 * 120.59205 * 235.20407 * 15 14 13 17 17 H 1.07999 * 120.00286 * 148.05217 * 16 15 14 18 18 C 1.38813 * 119.99758 * 327.77636 * 16 15 14 19 19 N 1.31620 * 120.00251 * 349.36631 * 18 16 15 20 20 Si 1.86807 * 119.99733 * 169.36338 * 18 16 15 21 21 H 1.48501 * 109.46745 * 89.99857 * 20 18 16 22 22 H 1.48495 * 109.47033 * 209.99854 * 20 18 16 23 23 H 1.48496 * 109.47289 * 330.00531 * 20 18 16 24 24 C 1.46966 * 118.81038 * 55.47419 * 15 14 13 25 25 C 1.46962 * 120.59382 * 4.77478 * 12 10 5 26 26 H 1.09000 * 109.47116 * 300.00570 * 1 2 3 27 27 H 1.08997 * 109.46999 * 60.00196 * 1 2 3 28 28 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47334 * 239.99889 * 2 1 3 30 30 H 1.09002 * 109.47116 * 64.93114 * 3 2 1 31 31 H 1.09004 * 109.46913 * 184.93160 * 3 2 1 32 32 H 1.09003 * 109.47254 * 304.92487 * 3 2 1 33 33 H 1.09000 * 109.47331 * 305.55178 * 4 2 1 34 34 H 1.08999 * 109.47072 * 185.55449 * 4 2 1 35 35 H 1.08999 * 109.46911 * 305.74105 * 5 4 2 36 36 H 1.08991 * 109.47275 * 304.84141 * 6 5 4 37 37 H 1.09009 * 109.47083 * 64.84469 * 6 5 4 38 38 H 1.08999 * 109.46846 * 305.93156 * 7 6 5 39 39 H 1.09002 * 109.47051 * 64.27222 * 8 7 6 40 40 H 1.08993 * 109.47158 * 184.27247 * 8 7 6 41 41 H 1.09001 * 109.47356 * 304.27295 * 8 7 6 42 42 H 1.09005 * 109.47369 * 59.99947 * 9 7 6 43 43 H 1.08998 * 109.47016 * 179.97438 * 9 7 6 44 44 H 1.08999 * 109.47415 * 299.99763 * 9 7 6 45 45 H 1.09003 * 109.61163 * 115.50440 * 13 12 10 46 46 H 1.09005 * 109.61177 * 354.99693 * 13 12 10 47 47 H 1.08995 * 109.61145 * 190.83537 * 14 13 12 48 48 H 1.08996 * 109.75091 * 70.40225 * 14 13 12 49 49 H 0.97000 * 119.99578 * 179.97438 * 19 18 16 50 50 H 1.08995 * 109.60542 * 64.26856 * 24 15 14 51 51 H 1.09001 * 109.60428 * 184.77828 * 24 15 14 52 52 H 1.08994 * 109.60636 * 244.48964 * 25 12 10 53 53 H 1.09003 * 109.61091 * 4.83545 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6470 -2.1983 1.1815 6 6 2.3815 -2.8685 0.0186 7 6 1.8987 -4.3133 -0.1246 8 6 0.4273 -4.3201 -0.5440 9 6 2.7354 -5.0275 -1.1879 10 6 2.0242 -2.8782 2.4726 11 8 3.0697 -3.4874 2.5541 12 7 1.1996 -2.8091 3.5364 13 6 1.6000 -3.3775 4.8311 14 6 0.5253 -4.3744 5.2822 15 7 -0.7906 -3.7298 5.1681 16 6 -1.6287 -3.6605 6.2488 17 1 -2.2962 -2.8190 6.3614 18 6 -1.6243 -4.6746 7.1966 19 7 -0.9769 -5.7956 6.9582 20 14 -2.5372 -4.4484 8.8107 21 1 -3.9333 -4.9323 8.6617 22 1 -1.8556 -5.2242 9.8778 23 1 -2.5487 -3.0090 9.1754 24 6 -1.1932 -3.1664 3.8718 25 6 -0.1162 -2.1646 3.4223 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.7505 1.9302 0.9309 31 1 3.1264 1.4438 -0.0883 32 1 1.6064 1.9812 -0.8426 33 1 1.5977 -0.2679 2.1365 34 1 3.1254 -0.6358 1.3004 35 1 0.5711 -2.2814 1.0279 36 1 2.1765 -2.3238 -0.9029 37 1 3.4540 -2.8616 0.2139 38 1 2.0069 -4.8288 0.8296 39 1 0.3293 -3.8721 -1.5329 40 1 0.0624 -5.3467 -0.5724 41 1 -0.1579 -3.7462 0.1745 42 1 3.7837 -5.0227 -0.8891 43 1 2.3918 -6.0569 -1.2896 44 1 2.6273 -4.5120 -2.1422 45 1 1.6916 -2.5798 5.5683 46 1 2.5550 -3.8922 4.7251 47 1 0.7038 -4.6606 6.3187 48 1 0.5550 -5.2601 4.6477 49 1 -0.9736 -6.5040 7.6207 50 1 -1.2820 -3.9665 3.1370 51 1 -2.1500 -2.6548 3.9768 52 1 -0.1469 -1.2806 4.0591 53 1 -0.2934 -1.8756 2.3863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449946919.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:20 Heat of formation + Delta-G solvation = -44.372394 kcal Electronic energy + Delta-G solvation = -28306.237675 eV Core-core repulsion = 24791.404191 eV Total energy + Delta-G solvation = -3514.833484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.18580 -37.57251 -36.54633 -35.58791 -33.83728 -31.69547 -31.11849 -30.04854 -27.37696 -27.08414 -26.93351 -26.27805 -24.21216 -23.30895 -22.34323 -20.49657 -20.27750 -19.38281 -18.25629 -17.35543 -16.23571 -15.58646 -15.42419 -14.97172 -14.80055 -14.55852 -13.97405 -13.95697 -13.87159 -13.62895 -13.37003 -13.30551 -13.21521 -12.72119 -12.57472 -12.36514 -12.30710 -12.14978 -11.89977 -11.78342 -11.61008 -11.44778 -11.15067 -11.04478 -10.86978 -10.86525 -10.79267 -10.70548 -10.56758 -10.38470 -10.29562 -10.24847 -10.18736 -9.98467 -9.82268 -9.09903 -8.57688 -8.16893 -6.63962 -5.83634 -3.35048 3.07686 3.33639 3.40534 3.41860 3.53034 4.42985 4.55927 4.67104 4.75963 4.92080 4.95119 5.04849 5.11220 5.18816 5.33074 5.34885 5.43748 5.47404 5.49459 5.52845 5.64581 5.68923 5.75046 5.76383 5.79899 5.81753 5.84956 5.87314 5.88061 5.92338 5.96716 6.01522 6.07844 6.12389 6.19395 6.23913 6.25465 6.34941 6.37980 6.42025 6.47783 6.53793 6.56651 6.72808 6.92825 7.31145 7.60290 7.72262 8.00784 8.40095 8.68319 9.14041 9.74722 10.33674 11.23117 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.003925 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.146457 B = 7131.309782 C = 7888.155171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.103 4.103 5 C -0.112 4.112 6 C -0.095 4.095 7 C -0.101 4.101 8 C -0.148 4.148 9 C -0.142 4.142 10 C 0.515 3.485 11 O -0.555 6.555 12 N -0.596 5.596 13 C 0.086 3.914 14 C 0.161 3.839 15 N -0.590 5.590 16 C -0.258 4.258 17 H 0.065 0.935 18 C 0.007 3.993 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.131 3.869 25 C 0.088 3.912 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.022 0.978 49 H 0.256 0.744 50 H 0.022 0.978 51 H 0.065 0.935 52 H 0.063 0.937 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 10.186 -15.825 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.141 4.141 5 C -0.133 4.133 6 C -0.133 4.133 7 C -0.120 4.120 8 C -0.205 4.205 9 C -0.199 4.199 10 C 0.302 3.698 11 O -0.434 6.434 12 N -0.328 5.328 13 C -0.038 4.038 14 C 0.034 3.966 15 N -0.313 5.313 16 C -0.388 4.388 17 H 0.083 0.917 18 C -0.192 4.192 19 N -0.546 5.546 20 Si 0.735 3.265 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.003 3.997 25 C -0.037 4.037 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.116 0.884 48 H 0.040 0.960 49 H 0.066 0.934 50 H 0.040 0.960 51 H 0.084 0.916 52 H 0.082 0.918 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.898 9.708 -15.630 19.040 hybrid contribution -0.627 -0.005 0.968 1.153 sum 4.271 9.702 -14.662 18.093 Atomic orbital electron populations 1.21934 0.95171 1.02023 1.01788 1.21161 0.96005 0.95958 0.98333 1.21837 1.00847 0.96021 1.01726 1.21559 1.01504 0.92663 0.98328 1.21531 1.02485 0.95736 0.93572 1.21533 1.00625 0.94851 0.96259 1.21147 0.94831 0.96126 0.99869 1.21902 0.96124 1.01695 1.00806 1.21774 0.99935 0.99946 0.98249 1.20523 0.83836 0.80394 0.84998 1.90622 1.25285 1.43675 1.83796 1.48061 1.16969 1.56909 1.10871 1.22488 1.00263 0.98177 0.82836 1.21164 0.82372 0.90951 1.02071 1.43942 1.14438 1.67627 1.05302 1.19159 1.17616 1.02320 0.99698 0.91716 1.25214 0.99271 0.94613 1.00125 1.69964 1.45208 1.04825 1.34585 0.86260 0.79397 0.77603 0.83257 1.21293 1.21512 1.20391 1.21373 0.94762 0.94280 0.89242 1.22500 0.83840 0.96826 1.00537 0.92464 0.92826 0.92299 0.90776 0.92667 0.92823 0.92784 0.91447 0.91446 0.88504 0.91465 0.90979 0.90532 0.92992 0.92868 0.92635 0.92747 0.92986 0.93145 0.92438 0.90301 0.88371 0.95961 0.93431 0.95960 0.91636 0.91848 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.97 37.16 0.33 -0.94 16 2 C -0.10 -0.85 2.80 -90.62 -0.25 -1.10 16 3 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 4 C -0.10 -1.13 4.12 -26.73 -0.11 -1.24 16 5 C -0.11 -1.44 1.15 -91.77 -0.11 -1.54 16 6 C -0.10 -1.15 3.70 -26.73 -0.10 -1.25 16 7 C -0.10 -1.30 2.76 -90.62 -0.25 -1.55 16 8 C -0.15 -1.71 9.06 37.16 0.34 -1.37 16 9 C -0.14 -1.59 9.19 37.16 0.34 -1.24 16 10 C 0.51 8.89 6.00 -10.98 -0.07 8.82 16 11 O -0.55 -11.32 14.63 5.56 0.08 -11.24 16 12 N -0.60 -10.83 2.95 -172.22 -0.51 -11.34 16 13 C 0.09 1.76 6.60 -3.60 -0.02 1.74 16 14 C 0.16 3.87 5.45 -3.59 -0.02 3.85 16 15 N -0.59 -14.40 2.95 -171.77 -0.51 -14.91 16 16 C -0.26 -6.86 9.57 -15.06 -0.14 -7.01 16 17 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 18 C 0.01 0.19 5.05 -17.43 -0.09 0.10 16 19 N -0.90 -25.80 11.08 55.49 0.61 -25.19 16 20 Si 0.91 21.21 29.57 -169.99 -5.03 16.18 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C 0.13 2.60 6.70 -3.37 -0.02 2.57 16 25 C 0.09 1.43 6.32 -3.37 -0.02 1.41 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.51 6.46 -51.93 -0.34 0.17 16 29 H 0.07 0.64 6.26 -51.93 -0.33 0.31 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.78 7.97 -51.93 -0.41 0.37 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.18 2.51 -51.93 -0.13 1.05 16 36 H 0.07 0.67 6.28 -51.93 -0.33 0.35 16 37 H 0.07 0.98 7.70 -51.92 -0.40 0.58 16 38 H 0.08 1.26 6.69 -51.93 -0.35 0.91 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.66 6.32 -51.93 -0.33 0.33 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.08 1.64 6.99 -51.93 -0.36 1.27 16 47 H 0.10 2.61 6.08 -51.93 -0.32 2.29 16 48 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 1.23 7.93 -51.93 -0.41 0.81 16 52 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 53 H 0.07 0.97 5.39 -51.93 -0.28 0.69 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -30.01 393.99 -9.12 -39.14 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -9.87 Total: 1.02 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 0.15 Total: 0.40 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.40 Total: -51.43 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.01 -9.12 -39.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449946919.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.236 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds