Wall clock time and date at job start Fri Apr 10 2020 22:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46896 * 2 1 4 4 C 1.52999 * 109.46932 * 119.99592 * 2 1 3 5 5 C 1.53003 * 109.46921 * 65.55222 * 4 2 1 6 6 C 1.53000 * 109.46914 * 65.74109 * 5 4 2 7 7 C 1.53004 * 109.46970 * 184.83937 * 6 5 4 8 8 C 1.52997 * 109.47083 * 65.93261 * 7 6 5 9 9 C 1.52995 * 109.46952 * 185.93614 * 7 6 5 10 10 C 1.50708 * 109.46887 * 185.73971 * 5 4 2 11 11 O 1.21274 * 119.99803 * 263.39053 * 10 5 4 12 12 N 1.34779 * 119.99733 * 83.39093 * 10 5 4 13 13 C 1.46957 * 120.59111 * 184.74789 * 12 10 5 14 14 C 1.53372 * 108.63855 * 235.25279 * 13 12 10 15 15 N 1.46971 * 108.63185 * 310.57848 * 14 13 12 16 16 C 1.36933 * 120.59205 * 235.20407 * 15 14 13 17 17 H 1.07999 * 120.00286 * 148.05217 * 16 15 14 18 18 C 1.38813 * 119.99758 * 327.77636 * 16 15 14 19 19 N 1.31620 * 120.00251 * 349.36631 * 18 16 15 20 20 Si 1.86807 * 119.99733 * 169.36338 * 18 16 15 21 21 H 1.48501 * 109.46745 * 89.99857 * 20 18 16 22 22 H 1.48495 * 109.47033 * 209.99854 * 20 18 16 23 23 H 1.48496 * 109.47289 * 330.00531 * 20 18 16 24 24 C 1.46966 * 118.81038 * 55.47419 * 15 14 13 25 25 C 1.46962 * 120.59382 * 4.77478 * 12 10 5 26 26 H 1.09000 * 109.47116 * 300.00570 * 1 2 3 27 27 H 1.08997 * 109.46999 * 60.00196 * 1 2 3 28 28 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47334 * 239.99889 * 2 1 3 30 30 H 1.09002 * 109.47116 * 64.93114 * 3 2 1 31 31 H 1.09004 * 109.46913 * 184.93160 * 3 2 1 32 32 H 1.09003 * 109.47254 * 304.92487 * 3 2 1 33 33 H 1.09000 * 109.47331 * 305.55178 * 4 2 1 34 34 H 1.08999 * 109.47072 * 185.55449 * 4 2 1 35 35 H 1.08999 * 109.46911 * 305.74105 * 5 4 2 36 36 H 1.08991 * 109.47275 * 304.84141 * 6 5 4 37 37 H 1.09009 * 109.47083 * 64.84469 * 6 5 4 38 38 H 1.08999 * 109.46846 * 305.93156 * 7 6 5 39 39 H 1.09002 * 109.47051 * 64.27222 * 8 7 6 40 40 H 1.08993 * 109.47158 * 184.27247 * 8 7 6 41 41 H 1.09001 * 109.47356 * 304.27295 * 8 7 6 42 42 H 1.09005 * 109.47369 * 59.99947 * 9 7 6 43 43 H 1.08998 * 109.47016 * 179.97438 * 9 7 6 44 44 H 1.08999 * 109.47415 * 299.99763 * 9 7 6 45 45 H 1.09003 * 109.61163 * 115.50440 * 13 12 10 46 46 H 1.09005 * 109.61177 * 354.99693 * 13 12 10 47 47 H 1.08995 * 109.61145 * 190.83537 * 14 13 12 48 48 H 1.08996 * 109.75091 * 70.40225 * 14 13 12 49 49 H 0.97000 * 119.99578 * 179.97438 * 19 18 16 50 50 H 1.08995 * 109.60542 * 64.26856 * 24 15 14 51 51 H 1.09001 * 109.60428 * 184.77828 * 24 15 14 52 52 H 1.08994 * 109.60636 * 244.48964 * 25 12 10 53 53 H 1.09003 * 109.61091 * 4.83545 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6470 -2.1983 1.1815 6 6 2.3815 -2.8685 0.0186 7 6 1.8987 -4.3133 -0.1246 8 6 0.4273 -4.3201 -0.5440 9 6 2.7354 -5.0275 -1.1879 10 6 2.0242 -2.8782 2.4726 11 8 3.0697 -3.4874 2.5541 12 7 1.1996 -2.8091 3.5364 13 6 1.6000 -3.3775 4.8311 14 6 0.5253 -4.3744 5.2822 15 7 -0.7906 -3.7298 5.1681 16 6 -1.6287 -3.6605 6.2488 17 1 -2.2962 -2.8190 6.3614 18 6 -1.6243 -4.6746 7.1966 19 7 -0.9769 -5.7956 6.9582 20 14 -2.5372 -4.4484 8.8107 21 1 -3.9333 -4.9323 8.6617 22 1 -1.8556 -5.2242 9.8778 23 1 -2.5487 -3.0090 9.1754 24 6 -1.1932 -3.1664 3.8718 25 6 -0.1162 -2.1646 3.4223 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.7505 1.9302 0.9309 31 1 3.1264 1.4438 -0.0883 32 1 1.6064 1.9812 -0.8426 33 1 1.5977 -0.2679 2.1365 34 1 3.1254 -0.6358 1.3004 35 1 0.5711 -2.2814 1.0279 36 1 2.1765 -2.3238 -0.9029 37 1 3.4540 -2.8616 0.2139 38 1 2.0069 -4.8288 0.8296 39 1 0.3293 -3.8721 -1.5329 40 1 0.0624 -5.3467 -0.5724 41 1 -0.1579 -3.7462 0.1745 42 1 3.7837 -5.0227 -0.8891 43 1 2.3918 -6.0569 -1.2896 44 1 2.6273 -4.5120 -2.1422 45 1 1.6916 -2.5798 5.5683 46 1 2.5550 -3.8922 4.7251 47 1 0.7038 -4.6606 6.3187 48 1 0.5550 -5.2601 4.6477 49 1 -0.9736 -6.5040 7.6207 50 1 -1.2820 -3.9665 3.1370 51 1 -2.1500 -2.6548 3.9768 52 1 -0.1469 -1.2806 4.0591 53 1 -0.2934 -1.8756 2.3863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449946919.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:19 Heat of formation + Delta-G solvation = -59.617576 kcal Electronic energy + Delta-G solvation = -28306.898756 eV Core-core repulsion = 24791.404191 eV Total energy + Delta-G solvation = -3515.494565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51899 -38.91693 -37.90893 -36.51806 -35.58667 -33.12311 -32.72850 -31.58964 -28.71215 -28.11169 -27.83980 -27.18267 -25.82890 -24.87974 -23.82816 -21.97253 -21.23207 -20.45627 -19.71471 -18.82677 -17.95091 -16.85347 -16.81116 -16.51525 -16.06139 -15.67632 -15.49604 -15.24735 -15.06517 -14.97786 -14.92198 -14.66007 -14.37041 -13.90452 -13.66787 -13.47157 -13.30026 -13.03925 -13.03646 -12.91807 -12.82181 -12.69597 -12.50175 -12.46726 -12.41866 -12.24820 -12.03240 -11.91542 -11.83294 -11.70256 -11.64558 -11.61337 -11.37651 -11.20327 -11.14463 -10.62480 -10.48117 -9.78064 -8.61250 -7.88122 -5.43657 1.47437 1.48877 1.58242 1.69847 2.09090 2.49973 3.28002 3.48910 3.57752 3.70719 3.86471 4.06907 4.11906 4.15165 4.18075 4.22391 4.23989 4.37999 4.41902 4.47311 4.54445 4.59834 4.66405 4.75274 4.79467 4.80128 4.84397 4.87658 4.89049 4.94408 4.97575 5.02039 5.05168 5.09184 5.14309 5.14683 5.20611 5.21779 5.24616 5.35180 5.41473 5.46430 5.50249 5.53873 5.56379 5.60892 5.63149 5.69700 6.36964 6.57598 7.09670 7.26019 7.77305 8.32889 9.16423 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.003925 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.146457 B = 7131.309782 C = 7888.155171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.098 4.098 5 C -0.101 4.101 6 C -0.090 4.090 7 C -0.103 4.103 8 C -0.145 4.145 9 C -0.139 4.139 10 C 0.510 3.490 11 O -0.590 6.590 12 N -0.603 5.603 13 C 0.101 3.899 14 C 0.174 3.826 15 N -0.607 5.607 16 C -0.264 4.264 17 H 0.075 0.925 18 C -0.048 4.048 19 N -0.939 5.939 20 Si 0.972 3.028 21 H -0.284 1.284 22 H -0.296 1.296 23 H -0.266 1.266 24 C 0.126 3.874 25 C 0.100 3.900 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.031 0.969 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.068 0.932 48 H -0.013 1.013 49 H 0.250 0.750 50 H 0.013 0.987 51 H 0.081 0.919 52 H 0.074 0.926 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 12.886 -17.937 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.127 4.127 7 C -0.122 4.122 8 C -0.202 4.202 9 C -0.196 4.196 10 C 0.301 3.699 11 O -0.471 6.471 12 N -0.334 5.334 13 C -0.024 4.024 14 C 0.048 3.952 15 N -0.331 5.331 16 C -0.394 4.394 17 H 0.092 0.908 18 C -0.244 4.244 19 N -0.584 5.584 20 Si 0.799 3.201 21 H -0.211 1.211 22 H -0.223 1.223 23 H -0.190 1.190 24 C 0.000 4.000 25 C -0.024 4.024 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.005 0.995 49 H 0.059 0.941 50 H 0.031 0.969 51 H 0.099 0.901 52 H 0.092 0.908 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.791 12.449 -17.775 22.029 hybrid contribution -0.268 -0.871 1.573 1.818 sum 3.523 11.578 -16.201 20.223 Atomic orbital electron populations 1.21961 0.94530 1.02151 1.02467 1.21127 0.96452 0.96167 0.97067 1.21829 1.00917 0.95498 1.02134 1.21564 1.01098 0.91239 0.99725 1.21561 1.03203 0.96502 0.90879 1.21531 0.99389 0.94610 0.97198 1.21122 0.96417 0.96384 0.98255 1.21881 0.94664 1.01557 1.02099 1.21751 0.99013 1.00108 0.98750 1.21414 0.83024 0.79598 0.85910 1.90606 1.26964 1.45131 1.84448 1.48158 1.18021 1.57049 1.10215 1.22069 0.98376 0.97396 0.84546 1.20816 0.84012 0.90880 0.99541 1.44179 1.14332 1.67775 1.06793 1.19556 1.17243 1.02284 1.00344 0.90755 1.25997 1.00504 0.94423 1.03443 1.70146 1.47114 1.05710 1.35444 0.85219 0.77878 0.77882 0.79097 1.21052 1.22278 1.19034 1.21573 0.96830 0.94685 0.86913 1.22484 0.81415 0.95547 1.02962 0.92547 0.91545 0.92376 0.89968 0.92965 0.92887 0.91552 0.91719 0.92310 0.87209 0.88210 0.92701 0.95080 0.90281 0.93576 0.93039 0.93642 0.93057 0.90683 0.91799 0.91203 0.91401 0.99453 0.94081 0.96913 0.90109 0.90811 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.97 71.98 0.65 -1.31 16 2 C -0.09 -1.25 2.80 -10.79 -0.03 -1.28 16 3 C -0.15 -1.87 9.19 71.98 0.66 -1.20 16 4 C -0.10 -1.92 4.12 30.59 0.13 -1.80 16 5 C -0.10 -2.38 1.15 -11.54 -0.01 -2.40 16 6 C -0.09 -2.00 3.70 30.60 0.11 -1.89 16 7 C -0.10 -2.57 2.76 -10.79 -0.03 -2.60 16 8 C -0.14 -3.04 9.06 71.98 0.65 -2.39 16 9 C -0.14 -2.94 9.19 71.98 0.66 -2.28 16 10 C 0.51 17.54 6.00 87.66 0.53 18.06 16 11 O -0.59 -24.78 14.63 -3.01 -0.04 -24.83 16 12 N -0.60 -21.74 2.95 -817.17 -2.41 -24.15 16 13 C 0.10 4.25 6.60 86.42 0.57 4.82 16 14 C 0.17 8.79 5.45 86.41 0.47 9.26 16 15 N -0.61 -30.00 2.95 -697.35 -2.06 -32.05 16 16 C -0.26 -14.07 9.57 84.03 0.80 -13.26 16 17 H 0.07 3.75 7.85 -2.91 -0.02 3.73 16 18 C -0.05 -2.65 5.05 84.86 0.43 -2.22 16 19 N -0.94 -55.69 11.08 21.65 0.24 -55.45 16 20 Si 0.97 44.03 29.57 68.60 2.03 46.06 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 C 0.13 4.88 6.70 86.56 0.58 5.46 16 25 C 0.10 3.04 6.32 86.56 0.55 3.59 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.75 6.46 -2.39 -0.02 0.73 16 29 H 0.08 1.04 6.26 -2.39 -0.01 1.03 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 1.32 7.97 -2.39 -0.02 1.30 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 2.33 2.51 -2.39 -0.01 2.32 16 36 H 0.10 1.61 6.28 -2.39 -0.02 1.59 16 37 H 0.05 1.44 7.70 -2.38 -0.02 1.42 16 38 H 0.03 1.05 6.69 -2.39 -0.02 1.03 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.10 6.32 -2.39 -0.02 1.09 16 42 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.07 3.05 6.99 -2.38 -0.02 3.03 16 47 H 0.07 3.82 6.08 -2.39 -0.01 3.81 16 48 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 49 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 50 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 51 H 0.08 2.87 7.93 -2.39 -0.02 2.85 16 52 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 53 H 0.11 2.56 5.39 -2.39 -0.01 2.55 16 Total: -1.00 -67.93 393.99 5.33 -62.61 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.85 Total: 19.23 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.71 Total: 8.58 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -4.23 Total: -111.65 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.04 Total: -24.83 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.93 5.33 -62.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449946919.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.987 kcal (2) G-P(sol) polarization free energy of solvation -67.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds