Wall clock time and date at job start Fri Apr 10 2020 22:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47087 * 2 1 4 4 C 1.52995 * 109.47039 * 120.00308 * 2 1 3 5 5 C 1.53005 * 109.47150 * 164.42008 * 4 2 1 6 6 C 1.52998 * 109.87935 * 64.90147 * 5 4 2 7 7 C 1.54324 * 110.01917 * 303.78634 * 5 4 2 8 8 C 1.55144 * 103.01519 * 218.22991 * 7 5 4 9 9 C 1.54910 * 101.65001 * 35.65695 * 8 7 5 10 10 N 1.47435 * 109.89109 * 185.93768 * 5 4 2 11 11 C 1.46904 * 111.00193 * 356.30875 * 10 5 4 12 12 C 1.52996 * 109.47656 * 186.94120 * 11 10 5 13 13 C 1.50694 * 109.47367 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00275 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00267 * 179.97438 * 13 12 11 16 16 C 1.46507 * 119.99510 * 359.97438 * 15 13 12 17 17 C 1.46491 * 120.00366 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.47253 * 89.99989 * 17 15 13 19 19 H 1.07997 * 119.99717 * 0.02562 * 18 17 15 20 20 C 1.37877 * 119.99736 * 180.02562 * 18 17 15 21 21 N 1.31516 * 119.99585 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00385 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47304 * 90.00184 * 22 20 18 24 24 H 1.48500 * 109.47373 * 210.00050 * 22 20 18 25 25 H 1.48505 * 109.47230 * 329.99846 * 22 20 18 26 26 H 1.09000 * 109.46575 * 300.00016 * 1 2 3 27 27 H 1.09002 * 109.46996 * 59.99444 * 1 2 3 28 28 H 1.09000 * 109.47144 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46575 * 239.99983 * 2 1 3 30 30 H 1.09007 * 109.46562 * 200.43630 * 3 2 1 31 31 H 1.08997 * 109.47382 * 320.43297 * 3 2 1 32 32 H 1.08997 * 109.47455 * 80.43656 * 3 2 1 33 33 H 1.08999 * 109.47230 * 44.42307 * 4 2 1 34 34 H 1.09003 * 109.47295 * 284.41670 * 4 2 1 35 35 H 1.08999 * 109.46978 * 155.62660 * 6 5 4 36 36 H 1.09002 * 109.47101 * 275.63017 * 6 5 4 37 37 H 1.09003 * 109.46822 * 35.62672 * 6 5 4 38 38 H 1.09005 * 110.70498 * 99.85210 * 7 5 4 39 39 H 1.08997 * 110.70837 * 336.61468 * 7 5 4 40 40 H 1.08997 * 110.99197 * 277.56267 * 8 7 5 41 41 H 1.08998 * 110.98633 * 153.74554 * 8 7 5 42 42 H 1.09001 * 110.37152 * 81.76287 * 9 8 7 43 43 H 1.08997 * 110.37227 * 203.98131 * 9 8 7 44 44 H 1.09008 * 109.47128 * 306.94220 * 11 10 5 45 45 H 1.08999 * 109.47148 * 66.93563 * 11 10 5 46 46 H 1.09002 * 109.46595 * 299.99937 * 12 11 10 47 47 H 1.08999 * 109.47298 * 59.99534 * 12 11 10 48 48 H 1.09000 * 109.46891 * 90.00224 * 16 15 13 49 49 H 1.09003 * 109.46792 * 209.99792 * 16 15 13 50 50 H 1.08998 * 109.47313 * 329.99904 * 16 15 13 51 51 H 1.09005 * 109.47356 * 210.00226 * 17 15 13 52 52 H 1.09007 * 109.47144 * 329.99942 * 17 15 13 53 53 H 0.97001 * 119.99878 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5201 -1.0657 1.0708 6 6 4.3463 0.2191 0.9830 7 6 3.7167 -1.9048 -0.2094 8 6 4.8058 -2.9280 0.2073 9 6 4.4350 -3.1940 1.6877 10 7 3.9849 -1.8844 2.2053 11 6 2.9215 -2.0509 3.2051 12 6 3.4879 -2.7541 4.4401 13 6 2.3968 -2.9254 5.4654 14 8 1.2765 -2.5241 5.2315 15 7 2.6660 -3.5245 6.6423 16 6 4.0192 -4.0098 6.9246 17 6 1.6055 -3.6905 7.6391 18 6 0.9078 -5.0076 7.4159 19 1 1.2232 -5.6562 6.6120 20 6 -0.1331 -5.3843 8.2378 21 7 -0.7422 -6.5334 8.0426 22 14 -0.6790 -4.2621 9.6277 23 1 -1.7315 -3.3382 9.1336 24 1 -1.2222 -5.0811 10.7410 25 1 0.4826 -3.4747 10.1135 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.0691 1.4639 -0.3589 31 1 1.4143 2.0491 -0.6546 32 1 2.0002 1.8420 1.0133 33 1 1.4692 -1.6378 1.3980 34 1 1.9199 -0.0733 2.1174 35 1 5.3725 0.0125 1.2866 36 1 4.3379 0.5871 -0.0430 37 1 3.9168 0.9730 1.6428 38 1 4.0691 -1.2794 -1.0298 39 1 2.7927 -2.4148 -0.4817 40 1 5.8019 -2.4929 0.1264 41 1 4.7308 -3.8406 -0.3840 42 1 3.6289 -3.9249 1.7515 43 1 5.3072 -3.5431 2.2405 44 1 2.5340 -1.0726 3.4897 45 1 2.1161 -2.6516 2.7823 46 1 3.8753 -3.7324 4.1555 47 1 4.2932 -2.1534 4.8629 48 1 4.5963 -3.2187 7.4034 49 1 3.9646 -4.8725 7.5886 50 1 4.5034 -4.2992 5.9919 51 1 2.0404 -3.6746 8.6385 52 1 0.8859 -2.8773 7.5431 53 1 -1.4748 -6.7984 8.6207 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451291293.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:23 Heat of formation + Delta-G solvation = -37.179070 kcal Electronic energy + Delta-G solvation = -27428.440040 eV Core-core repulsion = 23913.918482 eV Total energy + Delta-G solvation = -3514.521559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.45333 -38.92808 -36.15593 -34.92153 -33.37807 -32.48410 -31.40686 -29.66735 -28.08891 -27.99655 -26.58616 -25.84085 -25.10254 -23.57472 -22.10491 -21.07186 -20.31639 -18.43226 -18.28742 -16.94914 -16.58383 -15.95381 -15.54305 -15.50699 -15.18642 -15.09730 -14.53997 -14.16296 -13.80594 -13.68446 -13.33786 -13.19317 -12.91737 -12.70322 -12.67731 -12.39290 -12.27348 -12.15674 -12.09688 -11.95756 -11.68010 -11.60962 -11.45087 -11.32863 -11.13667 -10.97156 -10.89370 -10.81104 -10.66675 -10.59178 -10.49497 -10.48811 -10.23769 -10.12398 -9.53246 -8.96184 -8.58004 -8.28763 -7.66632 -6.07965 -4.06483 3.29965 3.35953 3.37790 3.40530 3.66777 4.07331 4.39859 4.40829 4.54072 4.67685 4.82516 4.84523 4.94503 5.17110 5.17577 5.19759 5.23607 5.28250 5.31057 5.36865 5.48162 5.54931 5.55530 5.60729 5.61919 5.64879 5.69663 5.73169 5.78765 5.82668 5.86439 5.87655 5.90841 5.92317 5.96106 6.02003 6.09801 6.14538 6.19651 6.20732 6.24789 6.32027 6.38041 6.72121 6.96331 7.04999 7.11836 7.37226 7.62594 8.28901 8.48454 8.94122 9.02638 9.52622 11.05522 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.003218 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.346986 B = 8699.117368 C = 9464.678713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.156 4.156 4 C -0.128 4.128 5 C 0.102 3.898 6 C -0.131 4.131 7 C -0.131 4.131 8 C -0.129 4.129 9 C 0.038 3.962 10 N -0.522 5.522 11 C 0.066 3.934 12 C -0.134 4.134 13 C 0.507 3.493 14 O -0.544 6.544 15 N -0.599 5.599 16 C 0.084 3.916 17 C 0.215 3.785 18 C -0.528 4.528 19 H 0.073 0.927 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.877 3.123 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.266 1.266 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.046 0.954 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.045 0.955 49 H 0.074 0.926 50 H 0.060 0.940 51 H 0.029 0.971 52 H 0.036 0.964 53 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.906 12.310 -16.676 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.213 4.213 4 C -0.166 4.166 5 C 0.013 3.987 6 C -0.189 4.189 7 C -0.170 4.170 8 C -0.167 4.167 9 C -0.089 4.089 10 N -0.246 5.246 11 C -0.062 4.062 12 C -0.175 4.175 13 C 0.294 3.706 14 O -0.422 6.422 15 N -0.331 5.331 16 C -0.060 4.060 17 C 0.094 3.906 18 C -0.566 4.566 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.537 5.537 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.191 1.191 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.065 0.935 46 H 0.103 0.897 47 H 0.110 0.890 48 H 0.063 0.937 49 H 0.093 0.907 50 H 0.079 0.921 51 H 0.047 0.953 52 H 0.054 0.946 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.576 12.647 -16.431 24.250 hybrid contribution -1.055 -0.203 0.525 1.196 sum 11.521 12.444 -15.906 23.250 Atomic orbital electron populations 1.21877 0.95332 1.01787 1.01587 1.21128 0.95569 0.96385 0.98275 1.22243 1.01445 0.95818 1.01808 1.22356 0.95069 1.01100 0.98098 1.21696 0.93532 0.94088 0.89431 1.22123 1.00153 0.95793 1.00799 1.22932 0.98987 0.97693 0.97365 1.22687 0.99171 0.99049 0.95841 1.23094 1.00180 0.91081 0.94587 1.63644 1.35961 1.13374 1.11617 1.22066 0.91929 1.01255 0.90970 1.21624 0.98364 1.02185 0.95282 1.20367 0.89292 0.78330 0.82657 1.90657 1.23468 1.50338 1.77774 1.47841 1.10868 1.57276 1.17151 1.21654 0.83488 0.99494 1.01333 1.19647 0.86340 0.98108 0.86467 1.21339 1.16437 1.02468 1.16404 0.90859 1.24867 0.95732 0.95040 0.97449 1.69901 1.23322 1.21296 1.39185 0.86834 0.79680 0.81009 0.82071 1.19910 1.21069 1.19054 0.92571 0.92980 0.92761 0.91176 0.91642 0.93352 0.92610 0.91350 0.90903 0.92223 0.92195 0.92537 0.90911 0.91333 0.90851 0.91117 0.93389 0.90283 0.89767 0.93531 0.89675 0.88963 0.93661 0.90702 0.92104 0.95311 0.94606 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.04 37.16 0.34 -1.09 16 2 C -0.09 -0.87 2.73 -90.62 -0.25 -1.12 16 3 C -0.16 -1.29 7.95 37.16 0.30 -0.99 16 4 C -0.13 -1.41 2.52 -26.73 -0.07 -1.48 16 5 C 0.10 1.04 0.90 -130.61 -0.12 0.92 16 6 C -0.13 -1.20 7.47 37.16 0.28 -0.92 16 7 C -0.13 -1.18 4.59 -24.90 -0.11 -1.29 16 8 C -0.13 -1.13 7.08 -24.59 -0.17 -1.31 16 9 C 0.04 0.41 5.63 -2.30 -0.01 0.40 16 10 N -0.52 -6.15 4.78 -215.75 -1.03 -7.18 16 11 C 0.07 0.95 2.96 -3.82 -0.01 0.94 16 12 C -0.13 -2.00 4.25 -27.89 -0.12 -2.12 16 13 C 0.51 10.44 7.67 -10.99 -0.08 10.36 16 14 O -0.54 -13.47 15.56 5.56 0.09 -13.38 16 15 N -0.60 -12.59 2.86 -182.95 -0.52 -13.11 16 16 C 0.08 1.32 10.24 59.85 0.61 1.93 16 17 C 0.22 5.37 4.23 -5.20 -0.02 5.35 16 18 C -0.53 -15.43 9.94 -34.44 -0.34 -15.77 16 19 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 20 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 21 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 22 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 23 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.44 8.13 -51.93 -0.42 0.02 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.61 6.42 -51.93 -0.33 0.28 16 30 H 0.06 0.48 5.10 -51.92 -0.26 0.22 16 31 H 0.05 0.37 7.97 -51.93 -0.41 -0.04 16 32 H 0.05 0.49 7.37 -51.93 -0.38 0.11 16 33 H 0.07 0.88 6.45 -51.93 -0.33 0.54 16 34 H 0.07 0.89 6.30 -51.93 -0.33 0.56 16 35 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.06 0.46 5.41 -51.93 -0.28 0.18 16 37 H 0.06 0.54 6.93 -51.93 -0.36 0.18 16 38 H 0.07 0.56 7.48 -51.93 -0.39 0.17 16 39 H 0.07 0.65 7.50 -51.93 -0.39 0.26 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.57 7.68 -51.93 -0.40 0.17 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.29 6.36 -51.92 -0.33 0.96 16 45 H 0.05 0.76 6.56 -51.93 -0.34 0.42 16 46 H 0.08 1.18 6.64 -51.93 -0.34 0.83 16 47 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 1.21 8.07 -51.93 -0.42 0.80 16 50 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 51 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 52 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 53 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -33.39 390.25 -9.13 -42.52 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -9.76 Total: -0.48 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 0.11 Total: -4.20 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.78 Total: -47.53 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.39 -9.13 -42.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451291293.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.342 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds