Wall clock time and date at job start Fri Apr 10 2020 22:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47087 * 2 1 4 4 C 1.52995 * 109.47039 * 120.00308 * 2 1 3 5 5 C 1.53005 * 109.47150 * 164.42008 * 4 2 1 6 6 C 1.52998 * 109.87935 * 64.90147 * 5 4 2 7 7 C 1.54324 * 110.01917 * 303.78634 * 5 4 2 8 8 C 1.55144 * 103.01519 * 218.22991 * 7 5 4 9 9 C 1.54910 * 101.65001 * 35.65695 * 8 7 5 10 10 N 1.47435 * 109.89109 * 185.93768 * 5 4 2 11 11 C 1.46904 * 111.00193 * 356.30875 * 10 5 4 12 12 C 1.52996 * 109.47656 * 186.94120 * 11 10 5 13 13 C 1.50694 * 109.47367 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00275 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00267 * 179.97438 * 13 12 11 16 16 C 1.46507 * 119.99510 * 359.97438 * 15 13 12 17 17 C 1.46491 * 120.00366 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.47253 * 89.99989 * 17 15 13 19 19 H 1.07997 * 119.99717 * 0.02562 * 18 17 15 20 20 C 1.37877 * 119.99736 * 180.02562 * 18 17 15 21 21 N 1.31516 * 119.99585 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00385 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47304 * 90.00184 * 22 20 18 24 24 H 1.48500 * 109.47373 * 210.00050 * 22 20 18 25 25 H 1.48505 * 109.47230 * 329.99846 * 22 20 18 26 26 H 1.09000 * 109.46575 * 300.00016 * 1 2 3 27 27 H 1.09002 * 109.46996 * 59.99444 * 1 2 3 28 28 H 1.09000 * 109.47144 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46575 * 239.99983 * 2 1 3 30 30 H 1.09007 * 109.46562 * 200.43630 * 3 2 1 31 31 H 1.08997 * 109.47382 * 320.43297 * 3 2 1 32 32 H 1.08997 * 109.47455 * 80.43656 * 3 2 1 33 33 H 1.08999 * 109.47230 * 44.42307 * 4 2 1 34 34 H 1.09003 * 109.47295 * 284.41670 * 4 2 1 35 35 H 1.08999 * 109.46978 * 155.62660 * 6 5 4 36 36 H 1.09002 * 109.47101 * 275.63017 * 6 5 4 37 37 H 1.09003 * 109.46822 * 35.62672 * 6 5 4 38 38 H 1.09005 * 110.70498 * 99.85210 * 7 5 4 39 39 H 1.08997 * 110.70837 * 336.61468 * 7 5 4 40 40 H 1.08997 * 110.99197 * 277.56267 * 8 7 5 41 41 H 1.08998 * 110.98633 * 153.74554 * 8 7 5 42 42 H 1.09001 * 110.37152 * 81.76287 * 9 8 7 43 43 H 1.08997 * 110.37227 * 203.98131 * 9 8 7 44 44 H 1.09008 * 109.47128 * 306.94220 * 11 10 5 45 45 H 1.08999 * 109.47148 * 66.93563 * 11 10 5 46 46 H 1.09002 * 109.46595 * 299.99937 * 12 11 10 47 47 H 1.08999 * 109.47298 * 59.99534 * 12 11 10 48 48 H 1.09000 * 109.46891 * 90.00224 * 16 15 13 49 49 H 1.09003 * 109.46792 * 209.99792 * 16 15 13 50 50 H 1.08998 * 109.47313 * 329.99904 * 16 15 13 51 51 H 1.09005 * 109.47356 * 210.00226 * 17 15 13 52 52 H 1.09007 * 109.47144 * 329.99942 * 17 15 13 53 53 H 0.97001 * 119.99878 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5201 -1.0657 1.0708 6 6 4.3463 0.2191 0.9830 7 6 3.7167 -1.9048 -0.2094 8 6 4.8058 -2.9280 0.2073 9 6 4.4350 -3.1940 1.6877 10 7 3.9849 -1.8844 2.2053 11 6 2.9215 -2.0509 3.2051 12 6 3.4879 -2.7541 4.4401 13 6 2.3968 -2.9254 5.4654 14 8 1.2765 -2.5241 5.2315 15 7 2.6660 -3.5245 6.6423 16 6 4.0192 -4.0098 6.9246 17 6 1.6055 -3.6905 7.6391 18 6 0.9078 -5.0076 7.4159 19 1 1.2232 -5.6562 6.6120 20 6 -0.1331 -5.3843 8.2378 21 7 -0.7422 -6.5334 8.0426 22 14 -0.6790 -4.2621 9.6277 23 1 -1.7315 -3.3382 9.1336 24 1 -1.2222 -5.0811 10.7410 25 1 0.4826 -3.4747 10.1135 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.0691 1.4639 -0.3589 31 1 1.4143 2.0491 -0.6546 32 1 2.0002 1.8420 1.0133 33 1 1.4692 -1.6378 1.3980 34 1 1.9199 -0.0733 2.1174 35 1 5.3725 0.0125 1.2866 36 1 4.3379 0.5871 -0.0430 37 1 3.9168 0.9730 1.6428 38 1 4.0691 -1.2794 -1.0298 39 1 2.7927 -2.4148 -0.4817 40 1 5.8019 -2.4929 0.1264 41 1 4.7308 -3.8406 -0.3840 42 1 3.6289 -3.9249 1.7515 43 1 5.3072 -3.5431 2.2405 44 1 2.5340 -1.0726 3.4897 45 1 2.1161 -2.6516 2.7823 46 1 3.8753 -3.7324 4.1555 47 1 4.2932 -2.1534 4.8629 48 1 4.5963 -3.2187 7.4034 49 1 3.9646 -4.8725 7.5886 50 1 4.5034 -4.2992 5.9919 51 1 2.0404 -3.6746 8.6385 52 1 0.8859 -2.8773 7.5431 53 1 -1.4748 -6.7984 8.6207 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451291293.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:22 Heat of formation + Delta-G solvation = -58.790957 kcal Electronic energy + Delta-G solvation = -27429.377202 eV Core-core repulsion = 23913.918482 eV Total energy + Delta-G solvation = -3515.458720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41261 -40.49135 -37.01498 -36.65076 -34.80416 -34.33929 -32.19502 -31.19129 -29.57252 -28.84134 -27.42325 -27.29574 -25.96029 -25.08343 -23.51469 -22.15734 -21.11806 -19.86854 -19.33863 -19.17454 -17.93800 -17.20840 -16.86415 -16.65604 -16.52459 -16.13850 -15.88328 -15.49855 -14.94433 -14.76984 -14.51447 -14.25815 -14.21740 -14.04871 -13.74647 -13.70106 -13.62140 -13.41354 -13.22382 -12.93341 -12.87784 -12.78400 -12.74589 -12.52666 -12.37306 -12.10792 -12.09885 -12.03401 -11.89719 -11.77106 -11.63175 -11.49642 -11.37538 -11.30370 -11.06721 -10.85786 -10.67348 -9.41004 -9.26975 -8.36761 -6.42061 1.30662 1.34920 1.43612 1.78524 2.27316 2.29154 2.96475 2.98501 3.53247 3.71954 3.82745 3.87552 3.99753 4.05513 4.07706 4.15058 4.26931 4.37485 4.40312 4.42302 4.53828 4.59954 4.65429 4.70073 4.74120 4.79017 4.81281 4.81810 4.85713 4.89361 4.94722 4.95449 4.97842 5.00287 5.01918 5.06917 5.11097 5.14672 5.17683 5.26366 5.28515 5.35599 5.43448 5.45622 5.52949 5.60480 5.62661 6.08809 6.15031 6.21386 6.58868 6.68470 7.18742 7.40514 8.80350 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.003218 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.346986 B = 8699.117368 C = 9464.678713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.152 4.152 4 C -0.123 4.123 5 C 0.097 3.903 6 C -0.125 4.125 7 C -0.129 4.129 8 C -0.122 4.122 9 C 0.031 3.969 10 N -0.518 5.518 11 C 0.078 3.922 12 C -0.116 4.116 13 C 0.496 3.504 14 O -0.598 6.598 15 N -0.609 5.609 16 C 0.078 3.922 17 C 0.223 3.777 18 C -0.538 4.538 19 H 0.026 0.974 20 C 0.010 3.990 21 N -0.946 5.946 22 Si 0.950 3.050 23 H -0.277 1.277 24 H -0.273 1.273 25 H -0.237 1.237 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.029 0.971 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.016 0.984 46 H 0.102 0.898 47 H 0.122 0.878 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.089 0.911 51 H 0.051 0.949 52 H 0.017 0.983 53 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.629 14.088 -17.130 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.209 4.209 4 C -0.161 4.161 5 C 0.008 3.992 6 C -0.183 4.183 7 C -0.168 4.168 8 C -0.160 4.160 9 C -0.096 4.096 10 N -0.242 5.242 11 C -0.050 4.050 12 C -0.156 4.156 13 C 0.285 3.715 14 O -0.480 6.480 15 N -0.340 5.340 16 C -0.064 4.064 17 C 0.100 3.900 18 C -0.576 4.576 19 H 0.045 0.955 20 C -0.188 4.188 21 N -0.586 5.586 22 Si 0.772 3.228 23 H -0.203 1.203 24 H -0.198 1.198 25 H -0.160 1.160 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.034 0.966 46 H 0.120 0.880 47 H 0.140 0.860 48 H 0.099 0.901 49 H 0.084 0.916 50 H 0.107 0.893 51 H 0.069 0.931 52 H 0.035 0.965 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.365 14.417 -16.892 27.005 hybrid contribution -1.908 -0.837 0.588 2.166 sum 13.457 13.580 -16.304 25.126 Atomic orbital electron populations 1.21897 0.95956 1.01098 1.01781 1.21114 0.95070 0.97180 0.97560 1.22207 1.02402 0.94749 1.01546 1.22264 0.95830 0.99554 0.98447 1.21839 0.92865 0.94831 0.89621 1.22083 0.99591 0.94671 1.01927 1.22936 0.98881 0.97811 0.97146 1.22681 0.99579 0.99510 0.94204 1.23211 0.99906 0.90064 0.96468 1.63719 1.34360 1.14147 1.11940 1.21815 0.91939 0.99715 0.91579 1.21553 0.96791 1.03633 0.93640 1.21379 0.89895 0.77103 0.83141 1.90626 1.26038 1.52527 1.78764 1.47989 1.12069 1.57282 1.16643 1.21973 0.81054 1.00312 1.03091 1.19328 0.87243 0.94773 0.88623 1.21570 1.17256 1.03715 1.15103 0.95518 1.25882 0.95619 0.96684 1.00627 1.70053 1.24180 1.23486 1.40846 0.85688 0.79890 0.78831 0.78382 1.20268 1.19784 1.16036 0.93787 0.91322 0.93940 0.89999 0.90233 0.92459 0.93576 0.94216 0.92793 0.92150 0.90188 0.93230 0.88769 0.92290 0.89462 0.90073 0.95228 0.89038 0.91270 0.96559 0.88015 0.85964 0.90109 0.91625 0.89295 0.93114 0.96493 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.04 71.98 0.65 -2.30 16 2 C -0.09 -1.62 2.73 -10.79 -0.03 -1.65 16 3 C -0.15 -2.27 7.95 71.98 0.57 -1.70 16 4 C -0.12 -2.81 2.52 30.59 0.08 -2.73 16 5 C 0.10 1.89 0.90 3.87 0.00 1.89 16 6 C -0.13 -2.00 7.47 71.98 0.54 -1.46 16 7 C -0.13 -2.06 4.59 31.78 0.15 -1.91 16 8 C -0.12 -1.83 7.08 31.98 0.23 -1.60 16 9 C 0.03 0.62 5.63 86.78 0.49 1.11 16 10 N -0.52 -11.71 4.78 -836.52 -4.00 -15.71 16 11 C 0.08 2.31 2.96 86.30 0.26 2.56 16 12 C -0.12 -3.37 4.25 29.84 0.13 -3.25 16 13 C 0.50 20.72 7.67 87.65 0.67 21.40 16 14 O -0.60 -31.06 15.56 -3.04 -0.05 -31.11 16 15 N -0.61 -25.38 2.86 -851.12 -2.43 -27.81 16 16 C 0.08 2.25 10.24 127.77 1.31 3.56 16 17 C 0.22 11.17 4.23 85.64 0.36 11.53 16 18 C -0.54 -32.49 9.94 25.60 0.25 -32.24 16 19 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 20 C 0.01 0.59 5.47 84.65 0.46 1.05 16 21 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 22 Si 0.95 45.30 27.47 68.60 1.88 47.18 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 1.10 8.13 -2.39 -0.02 1.09 16 28 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.30 6.42 -2.39 -0.02 1.28 16 30 H 0.08 0.95 5.10 -2.38 -0.01 0.94 16 31 H 0.06 0.77 7.97 -2.39 -0.02 0.75 16 32 H 0.05 0.78 7.37 -2.39 -0.02 0.76 16 33 H 0.04 1.12 6.45 -2.39 -0.02 1.10 16 34 H 0.05 1.41 6.30 -2.39 -0.02 1.40 16 35 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 36 H 0.08 0.95 5.41 -2.39 -0.01 0.94 16 37 H 0.05 0.87 6.93 -2.39 -0.02 0.85 16 38 H 0.09 1.12 7.48 -2.38 -0.02 1.11 16 39 H 0.06 1.06 7.50 -2.39 -0.02 1.04 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.03 0.70 7.68 -2.39 -0.02 0.68 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 2.24 6.36 -2.38 -0.02 2.22 16 45 H 0.02 0.57 6.56 -2.39 -0.02 0.56 16 46 H 0.10 2.65 6.64 -2.39 -0.02 2.63 16 47 H 0.12 2.87 8.11 -2.39 -0.02 2.85 16 48 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 50 H 0.09 2.06 6.44 -2.39 -0.02 2.05 16 51 H 0.05 2.32 7.13 -2.38 -0.02 2.30 16 52 H 0.02 0.92 6.85 -2.38 -0.02 0.90 16 53 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -77.32 390.25 2.62 -74.69 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.80 Total: 18.99 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 6.11 Total: -5.74 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -6.13 Total: -104.02 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.05 Total: -31.11 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.18 kcal Total: -77.32 2.62 -74.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451291293.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.902 kcal (2) G-P(sol) polarization free energy of solvation -77.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds