Wall clock time and date at job start Fri Apr 10 2020 22:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47219 * 2 1 4 4 C 1.53005 * 109.47226 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46983 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46983 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47226 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47604 * 305.00352 * 7 6 5 9 9 C 1.53002 * 109.46985 * 65.00290 * 7 6 5 10 10 C 1.52996 * 109.47404 * 56.49675 * 9 7 6 11 11 C 1.50697 * 109.47269 * 184.99932 * 7 6 5 12 12 O 1.21281 * 119.99926 * 329.09533 * 11 7 6 13 13 N 1.34777 * 119.99881 * 149.09126 * 11 7 6 14 14 C 1.46502 * 119.99714 * 174.36466 * 13 11 7 15 15 H 1.08996 * 110.78462 * 36.78322 * 14 13 11 16 16 C 1.55401 * 110.85318 * 160.08679 * 14 13 11 17 17 C 1.54911 * 101.66677 * 153.69737 * 16 14 13 18 18 N 1.47424 * 104.83038 * 323.07330 * 17 16 14 19 19 C 1.36939 * 125.64668 * 204.16625 * 18 17 16 20 20 H 1.08005 * 119.99998 * 179.97438 * 19 18 17 21 21 C 1.38808 * 120.00230 * 359.95741 * 19 18 17 22 22 N 1.31622 * 119.99832 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00298 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46785 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47272 * 119.99913 * 23 21 19 26 26 H 1.48501 * 109.47247 * 240.00196 * 23 21 19 27 27 C 1.47018 * 108.70423 * 24.12940 * 18 17 16 28 28 H 1.08995 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.09011 * 109.46725 * 299.99676 * 1 2 3 30 30 H 1.09002 * 109.47357 * 59.99634 * 1 2 3 31 31 H 1.09006 * 109.46733 * 240.00828 * 2 1 3 32 32 H 1.08991 * 109.47552 * 120.00827 * 2 1 3 33 33 H 1.09002 * 109.47297 * 60.00609 * 3 2 1 34 34 H 1.09002 * 109.47255 * 300.00429 * 3 2 1 35 35 H 1.08998 * 109.46726 * 60.00473 * 4 3 2 36 36 H 1.08995 * 109.46860 * 300.00495 * 4 3 2 37 37 H 1.09002 * 109.47652 * 60.00255 * 5 4 3 38 38 H 1.09002 * 109.47143 * 299.99926 * 5 4 3 39 39 H 1.08998 * 109.46726 * 60.00188 * 6 5 4 40 40 H 1.08995 * 109.46860 * 300.00210 * 6 5 4 41 41 H 1.08997 * 109.47534 * 176.49923 * 9 7 6 42 42 H 1.09003 * 109.47152 * 296.49620 * 9 7 6 43 43 H 1.08997 * 109.47139 * 53.88951 * 10 9 7 44 44 H 1.09000 * 109.47457 * 173.89464 * 10 9 7 45 45 H 1.09004 * 109.47001 * 293.89290 * 10 9 7 46 46 H 0.96992 * 120.00243 * 354.36312 * 13 11 7 47 47 H 1.08996 * 110.88973 * 35.62712 * 16 14 13 48 48 H 1.08998 * 111.07041 * 271.84260 * 16 14 13 49 49 H 1.09004 * 110.36905 * 204.23581 * 17 16 14 50 50 H 1.08996 * 110.46073 * 81.95675 * 17 16 14 51 51 H 0.97007 * 120.00143 * 180.02562 * 22 21 19 52 52 H 1.09000 * 109.87940 * 118.36068 * 27 18 17 53 53 H 1.09001 * 109.88402 * 239.36436 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6101 2.8849 -0.0013 7 6 6.1201 4.3274 -0.0013 8 1 5.6847 4.8668 -0.8425 9 6 5.7165 5.0110 1.3067 10 6 6.2544 4.2050 2.4906 11 6 7.6219 4.3293 -0.1264 12 8 8.2698 3.4134 0.3342 13 7 8.2448 5.3487 -0.7501 14 6 9.7083 5.4140 -0.7644 15 1 10.1391 4.4168 -0.8545 16 6 10.2099 6.3345 -1.9116 17 6 11.5781 6.8063 -1.3592 18 7 11.3625 6.9744 0.0895 19 6 12.0909 7.7881 0.9156 20 1 11.8528 7.8420 1.9677 21 6 13.1355 8.5436 0.4009 22 7 13.4256 8.4781 -0.8812 23 14 14.1296 9.6531 1.5280 24 1 13.6069 9.5469 2.9139 25 1 15.5543 9.2350 1.5034 26 1 14.0182 11.0589 1.0627 27 6 10.2355 6.1243 0.5002 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 1.6768 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9288 -0.8909 36 1 3.9337 0.9285 0.8890 37 1 3.7171 3.3983 0.8905 38 1 3.7163 3.3993 -0.8895 39 1 5.9726 2.3718 -0.8920 40 1 5.9741 2.3704 0.8880 41 1 6.1326 6.0181 1.3338 42 1 4.6295 5.0653 1.3679 43 1 7.3279 4.0581 2.3724 44 1 6.0615 4.7466 3.4166 45 1 5.7568 3.2357 2.5263 46 1 7.7243 6.0391 -1.1896 47 1 9.5350 7.1782 -2.0561 48 1 10.3349 5.7737 -2.8378 49 1 11.8636 7.7554 -1.8129 50 1 12.3438 6.0529 -1.5439 51 1 14.1559 9.0057 -1.2409 52 1 10.5740 5.3855 1.2266 53 1 9.4475 6.7385 0.9361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690099152.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:38 Heat of formation + Delta-G solvation = -75.029404 kcal Electronic energy + Delta-G solvation = -26099.021020 eV Core-core repulsion = 22582.858148 eV Total energy + Delta-G solvation = -3516.162872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.23484 -39.16351 -37.75111 -36.19126 -35.58600 -33.74912 -33.19531 -31.07374 -30.30476 -29.03306 -27.59285 -26.34459 -24.70283 -23.54455 -22.32274 -22.00166 -21.77431 -21.32709 -20.21250 -18.97657 -17.95347 -17.31129 -16.98794 -16.67789 -16.41330 -16.17285 -15.85601 -15.28763 -14.89792 -14.79208 -14.52005 -14.28775 -14.14159 -14.10669 -13.69313 -13.52468 -13.46227 -13.20585 -13.01563 -12.98574 -12.76301 -12.62259 -12.47153 -12.37407 -12.23602 -12.06368 -12.00377 -11.86253 -11.78274 -11.74657 -11.60539 -11.44528 -11.38024 -11.23585 -11.20395 -10.79151 -10.53360 -10.06003 -8.94084 -7.81044 -5.26328 1.45381 1.46695 1.57074 1.69057 2.20383 2.48652 3.29074 3.59045 3.73161 3.74426 3.81526 3.95320 4.05135 4.06675 4.11280 4.22058 4.24131 4.34820 4.38936 4.46482 4.55050 4.57206 4.64289 4.71809 4.73710 4.80375 4.85776 4.88175 4.90155 4.98859 5.00087 5.02797 5.04830 5.07653 5.12934 5.18839 5.24089 5.28456 5.32558 5.37115 5.40941 5.42550 5.52919 5.55555 5.57139 5.60826 5.63982 5.75577 6.27244 6.65050 7.07463 7.33958 7.72780 8.36133 9.20854 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.036520 B = 0.002103 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.510205 B =13313.172267 C =13731.387349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C -0.116 4.116 4 C -0.120 4.120 5 C -0.111 4.111 6 C -0.101 4.101 7 C -0.097 4.097 8 H 0.119 0.881 9 C -0.108 4.108 10 C -0.159 4.159 11 C 0.512 3.488 12 O -0.582 6.582 13 N -0.707 5.707 14 C 0.148 3.852 15 H 0.074 0.926 16 C -0.126 4.126 17 C 0.152 3.848 18 N -0.623 5.623 19 C -0.244 4.244 20 H 0.075 0.925 21 C -0.063 4.063 22 N -0.946 5.946 23 Si 0.982 3.018 24 H -0.270 1.270 25 H -0.292 1.292 26 H -0.285 1.285 27 C 0.131 3.869 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.028 0.972 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.415 0.585 47 H 0.084 0.916 48 H 0.092 0.908 49 H 0.084 0.916 50 H -0.013 1.013 51 H 0.249 0.751 52 H 0.001 0.999 53 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.717 -10.815 -1.465 28.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.153 4.153 4 C -0.158 4.158 5 C -0.148 4.148 6 C -0.139 4.139 7 C -0.118 4.118 8 H 0.137 0.863 9 C -0.145 4.145 10 C -0.216 4.216 11 C 0.300 3.700 12 O -0.462 6.462 13 N -0.359 5.359 14 C 0.041 3.959 15 H 0.092 0.908 16 C -0.165 4.165 17 C 0.027 3.973 18 N -0.349 5.349 19 C -0.372 4.372 20 H 0.093 0.907 21 C -0.256 4.256 22 N -0.595 5.595 23 Si 0.810 3.190 24 H -0.195 1.195 25 H -0.219 1.219 26 H -0.212 1.212 27 C 0.004 3.996 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.047 0.953 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.252 0.748 47 H 0.103 0.897 48 H 0.110 0.890 49 H 0.101 0.899 50 H 0.005 0.995 51 H 0.059 0.941 52 H 0.019 0.981 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -26.102 -11.324 -1.120 28.474 hybrid contribution 1.203 0.637 0.485 1.445 sum -24.898 -10.687 -0.635 27.102 Atomic orbital electron populations 1.21779 0.95510 1.01763 1.01960 1.21562 0.96208 0.97106 1.01747 1.21592 0.94771 0.96676 1.02308 1.21588 0.95743 0.96834 1.01635 1.21595 0.93004 0.97065 1.03171 1.21447 0.96573 0.93713 1.02118 1.21425 0.88782 0.99946 1.01660 0.86302 1.21480 1.02918 0.98367 0.91755 1.21872 1.00327 1.00869 0.98518 1.21456 0.91760 0.80720 0.76041 1.90669 1.69035 1.37204 1.49242 1.45954 1.05997 1.27508 1.56423 1.21630 0.80678 0.98555 0.95013 0.90757 1.23148 0.97740 0.98679 0.96915 1.21780 0.92182 0.99865 0.83499 1.44735 1.35430 1.48922 1.05857 1.19452 1.09759 1.16728 0.91310 0.90679 1.25628 0.99984 1.02003 0.97944 1.70017 1.32117 1.45028 1.12359 0.84961 0.77841 0.78098 0.78095 1.19481 1.21868 1.21182 1.21654 0.90076 0.92081 0.95764 0.92668 0.92621 0.92548 0.92334 0.92446 0.91771 0.91638 0.92522 0.92742 0.90735 0.90700 0.92897 0.92278 0.91806 0.87735 0.95279 0.92162 0.91668 0.74766 0.89732 0.88960 0.89859 0.99463 0.94072 0.98103 0.95310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.74 16 2 C -0.13 -1.41 5.93 30.59 0.18 -1.23 16 3 C -0.12 -1.24 5.21 30.60 0.16 -1.08 16 4 C -0.12 -1.54 5.21 30.59 0.16 -1.38 16 5 C -0.11 -1.36 4.97 30.59 0.15 -1.21 16 6 C -0.10 -1.83 3.91 30.60 0.12 -1.71 16 7 C -0.10 -1.79 2.50 -11.54 -0.03 -1.82 16 8 H 0.12 1.46 8.13 -2.39 -0.02 1.44 16 9 C -0.11 -1.85 5.37 30.59 0.16 -1.68 16 10 C -0.16 -3.48 9.12 71.98 0.66 -2.82 16 11 C 0.51 14.49 6.18 87.66 0.54 15.03 16 12 O -0.58 -21.88 14.83 -3.03 -0.05 -21.93 16 13 N -0.71 -19.45 5.13 -436.51 -2.24 -21.69 16 14 C 0.15 5.37 3.29 46.27 0.15 5.52 16 15 H 0.07 2.98 7.63 -2.39 -0.02 2.96 16 16 C -0.13 -4.47 6.71 32.07 0.22 -4.25 16 17 C 0.15 7.51 5.89 86.86 0.51 8.02 16 18 N -0.62 -33.32 3.39 -691.99 -2.35 -35.67 16 19 C -0.24 -14.12 10.27 84.03 0.86 -13.26 16 20 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 22 N -0.95 -56.24 10.09 21.65 0.22 -56.02 16 23 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 C 0.13 5.93 6.98 86.73 0.61 6.53 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.81 6.65 -2.39 -0.02 0.79 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.32 6.10 -2.39 -0.01 1.31 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.10 1.20 6.74 -2.39 -0.02 1.19 16 43 H 0.03 0.85 6.36 -2.39 -0.02 0.84 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 1.30 6.62 -2.38 -0.02 1.29 16 46 H 0.42 8.50 8.52 -92.71 -0.79 7.71 16 47 H 0.08 2.69 8.01 -2.39 -0.02 2.67 16 48 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 49 H 0.08 4.59 5.87 -2.39 -0.01 4.58 16 50 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 51 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 52 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 53 H 0.03 1.27 8.03 -2.39 -0.02 1.25 16 Total: -1.00 -71.02 406.35 3.31 -67.72 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.06 Total: 18.63 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 5.63 Total: 0.78 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -4.37 Total: -113.39 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -71.02 3.31 -67.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690099152.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.314 kcal (2) G-P(sol) polarization free energy of solvation -71.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds