Wall clock time and date at job start Fri Apr 10 2020 22:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47229 * 2 1 4 4 C 1.52994 * 109.47216 * 119.99838 * 2 1 3 5 5 C 1.53003 * 109.47412 * 174.99816 * 4 2 1 6 6 C 1.52998 * 109.47593 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47199 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99930 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99943 * 180.02562 * 7 6 5 10 10 C 1.46937 * 120.60290 * 359.97438 * 9 7 6 11 11 C 1.53189 * 108.77230 * 233.57533 * 10 9 7 12 12 C 1.53042 * 109.34074 * 305.41937 * 11 10 9 13 13 C 1.53032 * 109.54056 * 61.34870 * 12 11 10 14 14 H 1.09005 * 109.49678 * 58.58025 * 13 12 11 15 15 C 1.52997 * 109.49897 * 178.68426 * 13 12 11 16 16 N 1.46503 * 109.46989 * 294.99695 * 15 13 12 17 17 C 1.46495 * 119.99706 * 90.00151 * 16 15 13 18 18 C 1.36938 * 120.00263 * 270.00081 * 16 15 13 19 19 H 1.07997 * 119.99883 * 142.04035 * 18 16 15 20 20 C 1.38819 * 119.99722 * 322.03692 * 18 16 15 21 21 N 1.31619 * 119.99546 * 155.55232 * 20 18 16 22 22 Si 1.86796 * 120.00124 * 335.55198 * 20 18 16 23 23 H 1.48503 * 109.47287 * 95.31595 * 22 20 18 24 24 H 1.48498 * 109.47155 * 215.31941 * 22 20 18 25 25 H 1.48502 * 109.47050 * 335.31642 * 22 20 18 26 26 C 1.46923 * 120.63049 * 180.02562 * 9 7 6 27 27 H 1.09007 * 109.47581 * 299.99956 * 1 2 3 28 28 H 1.09001 * 109.47356 * 60.00073 * 1 2 3 29 29 H 1.09005 * 109.47585 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47328 * 240.00318 * 2 1 3 31 31 H 1.09001 * 109.46892 * 300.00210 * 3 2 1 32 32 H 1.09000 * 109.46706 * 59.99937 * 3 2 1 33 33 H 1.08995 * 109.47257 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47458 * 55.00394 * 4 2 1 35 35 H 1.09000 * 109.47424 * 295.00116 * 4 2 1 36 36 H 1.09005 * 109.46542 * 60.00225 * 5 4 2 37 37 H 1.08995 * 109.47505 * 300.00605 * 5 4 2 38 38 H 1.09005 * 109.46747 * 60.00651 * 6 5 4 39 39 H 1.08995 * 109.47435 * 300.00950 * 6 5 4 40 40 H 1.09002 * 109.55523 * 113.80557 * 10 9 7 41 41 H 1.08997 * 109.61784 * 353.38116 * 10 9 7 42 42 H 1.08999 * 109.49581 * 185.44602 * 11 10 9 43 43 H 1.08996 * 109.49539 * 65.38770 * 11 10 9 44 44 H 1.09004 * 109.45810 * 181.37082 * 12 11 10 45 45 H 1.08997 * 109.45550 * 301.32733 * 12 11 10 46 46 H 1.08992 * 109.47039 * 54.99961 * 15 13 12 47 47 H 1.09003 * 109.46973 * 175.00250 * 15 13 12 48 48 H 1.09002 * 109.47459 * 95.28222 * 17 16 15 49 49 H 1.09002 * 109.47300 * 215.28677 * 17 16 15 50 50 H 1.08996 * 109.47289 * 335.28336 * 17 16 15 51 51 H 0.97001 * 119.99452 * 180.02562 * 21 20 18 52 52 H 1.08997 * 109.58443 * 6.60128 * 26 9 7 53 53 H 1.09001 * 109.69964 * 246.24585 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 6 4.0749 -1.5517 2.4375 7 6 5.5767 -1.6604 2.3768 8 8 6.1797 -1.2058 1.4277 9 7 6.2498 -2.2628 3.3771 10 6 5.5326 -2.8177 4.5333 11 6 6.1371 -2.2347 5.8145 12 6 7.6455 -2.4931 5.8264 13 6 8.2934 -1.7979 4.6269 14 1 8.0875 -0.7284 4.6715 15 6 9.8054 -2.0294 4.6578 16 7 10.3754 -1.3758 5.8386 17 6 10.4842 -2.1103 7.1014 18 6 10.8066 -0.0784 5.7618 19 1 10.6500 0.5928 6.5933 20 6 11.4451 0.3741 4.6152 21 7 11.4332 1.6562 4.3179 22 14 12.3212 -0.8366 3.4945 23 1 11.4106 -1.2394 2.3927 24 1 13.5338 -0.1958 2.9252 25 1 12.7156 -2.0370 4.2746 26 6 7.7139 -2.3760 3.3324 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6054 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1369 36 1 3.9994 0.1676 1.1420 37 1 3.8532 -1.3939 0.3003 38 1 3.6403 -2.5503 2.4838 39 1 3.7865 -0.9885 3.3250 40 1 5.6367 -3.9027 4.5409 41 1 4.4777 -2.5502 4.4724 42 1 5.6796 -2.7106 6.6818 43 1 5.9516 -1.1612 5.8485 44 1 8.0739 -2.1006 6.7486 45 1 7.8306 -3.5657 5.7680 46 1 10.0083 -3.0994 4.7014 47 1 10.2556 -1.6105 3.7578 48 1 11.4815 -2.5420 7.1860 49 1 10.3114 -1.4287 7.9343 50 1 9.7405 -2.9068 7.1237 51 1 11.8790 1.9723 3.5165 52 1 8.0977 -1.8172 2.4789 53 1 7.9988 -3.4241 3.2410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690195469.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:43 Heat of formation + Delta-G solvation = -64.974716 kcal Electronic energy + Delta-G solvation = -26960.690137 eV Core-core repulsion = 23444.963268 eV Total energy + Delta-G solvation = -3515.726868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.29489 -39.20669 -37.85637 -37.24508 -34.44538 -33.76553 -33.19474 -32.43116 -28.75531 -28.32887 -28.00280 -27.11156 -26.00185 -23.74477 -23.11737 -22.63706 -21.27025 -20.85954 -19.76312 -18.71835 -18.03902 -17.29104 -16.99218 -16.84702 -16.28164 -15.89425 -15.48080 -15.23183 -15.12076 -15.09414 -14.87927 -14.62070 -14.37544 -14.14853 -14.00528 -13.86449 -13.63610 -13.32507 -13.08286 -12.98812 -12.94390 -12.67354 -12.59173 -12.49180 -12.34507 -12.24699 -11.95996 -11.89049 -11.83091 -11.64384 -11.58823 -11.49985 -11.38605 -11.31148 -11.15456 -10.76040 -10.62391 -9.61591 -8.73967 -8.26110 -5.60600 1.26504 1.34039 1.45869 1.63626 2.04411 2.38005 2.98357 3.43260 3.53848 3.81358 3.84824 3.97515 3.99164 4.06204 4.12541 4.21162 4.23672 4.33734 4.37785 4.45916 4.50246 4.61507 4.65028 4.68514 4.73832 4.75343 4.76790 4.83249 4.86171 4.89240 4.91327 4.93469 4.98302 5.04435 5.06010 5.10775 5.12984 5.20564 5.23259 5.29053 5.31278 5.41332 5.48133 5.52552 5.55171 5.56818 5.59366 5.91032 6.12631 6.47492 6.97536 7.20568 7.61919 8.03433 8.94019 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.003110 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.331808 B = 9001.989842 C = 9908.151257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C -0.153 4.153 4 C -0.105 4.105 5 C -0.105 4.105 6 C -0.127 4.127 7 C 0.497 3.503 8 O -0.600 6.600 9 N -0.611 5.611 10 C 0.105 3.895 11 C -0.130 4.130 12 C -0.105 4.105 13 C -0.105 4.105 14 H 0.028 0.972 15 C 0.140 3.860 16 N -0.620 5.620 17 C 0.121 3.879 18 C -0.256 4.256 19 H 0.039 0.961 20 C -0.021 4.021 21 N -0.947 5.947 22 Si 0.938 3.062 23 H -0.282 1.282 24 H -0.307 1.307 25 H -0.253 1.253 26 C 0.119 3.881 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.043 0.957 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.022 0.978 48 H 0.011 0.989 49 H 0.033 0.967 50 H 0.075 0.925 51 H 0.261 0.739 52 H 0.045 0.955 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.948 -13.626 -1.276 27.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.210 4.210 4 C -0.143 4.143 5 C -0.143 4.143 6 C -0.166 4.166 7 C 0.287 3.713 8 O -0.481 6.481 9 N -0.343 5.343 10 C -0.016 4.016 11 C -0.168 4.168 12 C -0.142 4.142 13 C -0.127 4.127 14 H 0.047 0.953 15 C 0.014 3.986 16 N -0.344 5.344 17 C -0.023 4.023 18 C -0.386 4.386 19 H 0.057 0.943 20 C -0.217 4.217 21 N -0.591 5.591 22 Si 0.766 3.234 23 H -0.209 1.209 24 H -0.236 1.236 25 H -0.177 1.177 26 C -0.004 4.004 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.113 0.887 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.040 0.960 48 H 0.029 0.971 49 H 0.052 0.948 50 H 0.094 0.906 51 H 0.070 0.930 52 H 0.064 0.936 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.578 -13.307 -1.805 27.134 hybrid contribution 1.423 0.675 -0.877 1.803 sum -22.155 -12.632 -2.682 25.644 Atomic orbital electron populations 1.21808 0.94044 1.02218 1.01968 1.21133 0.96501 0.95853 0.98395 1.21920 1.00449 0.96719 1.01901 1.21616 0.93010 1.01533 0.98125 1.21371 0.96473 0.99866 0.96561 1.21757 0.88277 1.05039 1.01514 1.21723 0.92175 0.76101 0.81262 1.90682 1.71856 1.49899 1.35712 1.48333 1.06716 1.57461 1.21775 1.22109 0.97187 0.99281 0.83020 1.21921 0.95360 1.00884 0.98685 1.21549 0.95348 1.00384 0.96913 1.21849 0.96579 0.98729 0.95516 0.95342 1.21211 0.91825 0.96347 0.89213 1.44099 1.70485 1.11036 1.08789 1.21302 0.98746 0.95410 0.86827 1.18631 1.31378 0.86572 1.02061 0.94301 1.26083 0.98974 0.96596 1.00066 1.70028 1.45794 1.16160 1.27107 0.85931 0.77941 0.80474 0.79028 1.20933 1.23561 1.17699 1.21440 0.80406 1.01125 0.97472 0.92308 0.92735 0.91900 0.91986 0.92584 0.92351 0.94044 0.90104 0.91005 0.93659 0.93026 0.85577 0.86968 0.88741 0.86772 0.87493 0.93772 0.91966 0.90021 0.90905 0.96023 0.97118 0.94820 0.90605 0.93011 0.93587 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 71.98 0.66 -0.99 16 2 C -0.10 -1.51 2.92 -10.80 -0.03 -1.54 16 3 C -0.15 -2.66 8.95 71.98 0.64 -2.01 16 4 C -0.11 -1.47 4.68 30.59 0.14 -1.33 16 5 C -0.10 -2.16 4.26 30.59 0.13 -2.03 16 6 C -0.13 -2.31 4.05 29.85 0.12 -2.19 16 7 C 0.50 14.93 7.70 87.66 0.67 15.60 16 8 O -0.60 -24.86 15.40 -3.04 -0.05 -24.91 16 9 N -0.61 -16.65 2.97 -818.96 -2.44 -19.09 16 10 C 0.11 1.73 6.34 86.36 0.55 2.28 16 11 C -0.13 -2.58 6.08 30.67 0.19 -2.40 16 12 C -0.10 -2.77 4.22 30.62 0.13 -2.64 16 13 C -0.10 -3.86 2.54 -10.73 -0.03 -3.89 16 14 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 15 C 0.14 5.87 4.01 86.38 0.35 6.22 16 16 N -0.62 -29.10 2.28 -726.95 -1.66 -30.76 16 17 C 0.12 4.49 9.59 127.77 1.22 5.72 16 18 C -0.26 -14.95 9.91 84.04 0.83 -14.12 16 19 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 20 C -0.02 -1.25 5.26 84.86 0.45 -0.81 16 21 N -0.95 -62.04 13.97 21.65 0.30 -61.74 16 22 Si 0.94 48.57 25.23 68.60 1.73 50.30 16 23 H -0.28 -14.37 6.65 99.48 0.66 -13.70 16 24 H -0.31 -16.06 7.11 99.48 0.71 -15.35 16 25 H -0.25 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.12 4.01 5.71 86.35 0.49 4.50 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 0.88 6.57 -2.39 -0.02 0.86 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.04 1.18 6.52 -2.38 -0.02 1.17 16 37 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 38 H 0.13 1.42 7.94 -2.38 -0.02 1.40 16 39 H 0.11 1.63 7.69 -2.39 -0.02 1.61 16 40 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.11 1.16 5.93 -2.39 -0.01 1.15 16 42 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.84 5.88 -2.38 -0.01 1.83 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 47 H 0.02 1.06 3.49 -2.39 -0.01 1.05 16 48 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 50 H 0.08 2.20 6.20 -2.39 -0.01 2.18 16 51 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 52 H 0.05 1.94 7.00 -2.39 -0.02 1.92 16 53 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -79.75 396.10 5.21 -74.54 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.79 Total: 11.28 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 6.52 Total: 0.38 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -3.79 Total: -111.59 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 1.73 Total: 50.30 kcal Total: -79.75 5.21 -74.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690195469.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.567 kcal (2) G-P(sol) polarization free energy of solvation -79.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds