Wall clock time and date at job start Fri Apr 10 2020 22:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46970 * 2 1 4 4 C 1.53008 * 109.47118 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47182 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47192 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46919 * 60.00189 * 6 5 4 8 8 C 1.53000 * 109.47207 * 300.00168 * 6 5 4 9 9 C 1.52995 * 109.47025 * 293.74296 * 8 6 5 10 10 C 1.50700 * 109.47184 * 180.02562 * 6 5 4 11 11 O 1.21281 * 119.99984 * 359.00903 * 10 6 5 12 12 N 1.34780 * 119.99687 * 179.01580 * 10 6 5 13 13 C 1.47427 * 125.64525 * 174.95269 * 12 10 6 14 14 C 1.54905 * 104.82851 * 204.08736 * 13 12 10 15 15 C 1.55155 * 101.58483 * 322.98949 * 14 13 12 16 16 H 1.09003 * 110.71694 * 276.96337 * 15 14 13 17 17 N 1.46492 * 110.71940 * 153.86866 * 15 14 13 18 18 C 1.36940 * 120.00427 * 86.45488 * 17 15 14 19 19 H 1.08000 * 119.99469 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00153 * 179.97438 * 18 17 15 21 21 N 1.31614 * 119.99993 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99768 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47217 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47063 * 120.00315 * 22 20 18 25 25 H 1.48498 * 109.46635 * 239.99790 * 22 20 18 26 26 C 1.47018 * 125.65083 * 354.63683 * 12 10 6 27 27 H 1.08998 * 109.47341 * 300.00499 * 1 2 3 28 28 H 1.09000 * 109.47150 * 60.00291 * 1 2 3 29 29 H 1.08998 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47144 * 240.00006 * 2 1 3 31 31 H 1.09000 * 109.47150 * 119.99709 * 2 1 3 32 32 H 1.08998 * 109.47496 * 59.99596 * 3 2 1 33 33 H 1.09006 * 109.47007 * 299.99108 * 3 2 1 34 34 H 1.08998 * 109.47316 * 59.99426 * 4 3 2 35 35 H 1.09000 * 109.46521 * 299.99873 * 4 3 2 36 36 H 1.09007 * 109.47208 * 59.99868 * 5 4 3 37 37 H 1.09000 * 109.47208 * 299.99974 * 5 4 3 38 38 H 1.08993 * 109.46999 * 69.59448 * 7 6 5 39 39 H 1.08995 * 109.46779 * 189.59492 * 7 6 5 40 40 H 1.09004 * 109.46949 * 309.59540 * 7 6 5 41 41 H 1.08999 * 109.47031 * 53.74259 * 8 6 5 42 42 H 1.08994 * 109.46991 * 173.73853 * 8 6 5 43 43 H 1.08994 * 109.47597 * 59.99929 * 9 8 6 44 44 H 1.09006 * 109.47290 * 180.02562 * 9 8 6 45 45 H 1.08999 * 109.47186 * 299.99869 * 9 8 6 46 46 H 1.08996 * 110.36528 * 322.92858 * 13 12 10 47 47 H 1.09000 * 110.36712 * 85.24831 * 13 12 10 48 48 H 1.09000 * 111.00487 * 81.06625 * 14 13 12 49 49 H 1.09004 * 110.99734 * 204.87589 * 14 13 12 50 50 H 0.96999 * 119.99669 * 266.45108 * 17 15 14 51 51 H 0.96998 * 120.00103 * 180.02562 * 21 20 18 52 52 H 1.09003 * 109.88392 * 298.40471 * 26 12 10 53 53 H 1.08996 * 109.88023 * 59.56250 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6100 2.8851 -0.0013 7 6 6.1200 2.1633 -1.2503 8 6 6.1200 2.1644 1.2482 9 6 5.7424 2.9712 2.4921 10 6 6.1123 4.3059 -0.0013 11 8 5.3243 5.2277 -0.0195 12 7 7.4373 4.5522 0.0188 13 6 8.0656 5.8819 -0.0841 14 6 9.4902 5.6063 -0.6266 15 6 9.8478 4.2808 0.0962 16 1 10.2211 4.4781 1.1011 17 7 10.8285 3.5164 -0.6783 18 6 12.1667 3.7605 -0.5199 19 1 12.4989 4.5168 0.1757 20 6 13.0960 3.0358 -1.2535 21 7 12.6910 2.1137 -2.1008 22 14 14.9214 3.3683 -1.0368 23 1 15.1126 4.4447 -0.0318 24 1 15.5982 2.1308 -0.5724 25 1 15.5043 3.7941 -2.3345 26 6 8.4950 3.5401 0.1534 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.9330 0.9288 -0.8908 35 1 3.9337 0.9286 0.8892 36 1 3.7170 3.3992 0.8887 37 1 3.7163 3.3986 -0.8913 38 1 5.9032 2.7661 -2.1321 39 1 7.1964 2.0127 -1.1687 40 1 5.6235 1.1970 -1.3396 41 1 5.6682 1.1742 1.3064 42 1 7.2042 2.0663 1.1940 43 1 4.6583 3.0692 2.5464 44 1 6.1062 2.4580 3.3824 45 1 6.1943 3.9614 2.4340 46 1 7.5100 6.5112 -0.7793 47 1 8.1180 6.3536 0.8971 48 1 9.4769 5.4704 -1.7080 49 1 10.1770 6.4040 -0.3435 50 1 10.5300 2.8373 -1.3033 51 1 13.3404 1.6071 -2.6132 52 1 8.3936 3.0224 1.1072 53 1 8.4308 2.8254 -0.6671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690259977.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:55 Heat of formation + Delta-G solvation = -64.303428 kcal Electronic energy + Delta-G solvation = -27268.622393 eV Core-core repulsion = 23752.924634 eV Total energy + Delta-G solvation = -3515.697759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79908 -39.11474 -37.96507 -36.10101 -35.79197 -33.24840 -32.36318 -31.51671 -30.50868 -29.26250 -27.33059 -25.91861 -25.31034 -24.28339 -23.50268 -22.03143 -21.62731 -21.07654 -19.63685 -19.32064 -17.56911 -17.31562 -16.88064 -16.69511 -16.39605 -15.93199 -15.54091 -15.33372 -15.10540 -14.76013 -14.52170 -14.35707 -14.10947 -14.06120 -13.87131 -13.62265 -13.43686 -13.33617 -13.04489 -12.98648 -12.82776 -12.73478 -12.69972 -12.43939 -12.37318 -12.17138 -12.04633 -11.91096 -11.80897 -11.67901 -11.63870 -11.50514 -11.46821 -11.18518 -11.09423 -10.91412 -10.60110 -9.62692 -9.01114 -7.93250 -5.22128 1.50312 1.51501 1.60428 1.61967 1.98497 2.57942 3.33516 3.41004 3.62110 3.74874 3.80968 3.86786 3.98392 3.99312 4.11922 4.20598 4.24441 4.32241 4.34279 4.38774 4.49184 4.50691 4.55800 4.60620 4.68815 4.71794 4.74422 4.79899 4.82013 4.90670 4.93834 4.97989 5.03550 5.04348 5.11927 5.14350 5.17329 5.22019 5.26434 5.27282 5.28051 5.34103 5.38082 5.43814 5.50797 5.54842 5.56956 5.63640 6.28037 6.53636 7.13490 7.35851 8.07046 8.31066 9.29942 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.002827 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.839698 B = 9902.164325 C =10613.086996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.087 4.087 6 C -0.068 4.068 7 C -0.151 4.151 8 C -0.126 4.126 9 C -0.152 4.152 10 C 0.537 3.463 11 O -0.586 6.586 12 N -0.610 5.610 13 C 0.110 3.890 14 C -0.143 4.143 15 C 0.164 3.836 16 H 0.068 0.932 17 N -0.726 5.726 18 C -0.236 4.236 19 H 0.079 0.921 20 C -0.072 4.072 21 N -0.966 5.966 22 Si 0.968 3.032 23 H -0.266 1.266 24 H -0.295 1.295 25 H -0.298 1.298 26 C 0.095 3.905 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.030 0.970 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.055 0.945 49 H 0.081 0.919 50 H 0.375 0.625 51 H 0.250 0.750 52 H 0.092 0.908 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.901 -3.026 7.009 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.154 4.154 5 C -0.125 4.125 6 C -0.071 4.071 7 C -0.208 4.208 8 C -0.163 4.163 9 C -0.209 4.209 10 C 0.328 3.672 11 O -0.466 6.466 12 N -0.343 5.343 13 C -0.013 4.013 14 C -0.184 4.184 15 C 0.054 3.946 16 H 0.086 0.914 17 N -0.366 5.366 18 C -0.368 4.368 19 H 0.097 0.903 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.798 3.202 23 H -0.190 1.190 24 H -0.222 1.222 25 H -0.225 1.225 26 C -0.028 4.028 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.050 0.950 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.100 0.900 50 H 0.208 0.792 51 H 0.059 0.941 52 H 0.110 0.890 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.220 -2.481 7.080 21.567 hybrid contribution 1.143 0.285 -0.595 1.320 sum -19.077 -2.196 6.485 20.268 Atomic orbital electron populations 1.21788 0.95798 1.01848 1.01715 1.21526 0.95970 0.96358 1.02266 1.21589 0.95106 0.97145 1.01719 1.21744 0.95495 0.95035 1.03143 1.21347 0.91233 0.97996 1.01907 1.20809 0.97614 0.90132 0.98539 1.22096 1.02211 1.01440 0.95028 1.21945 1.02323 1.00132 0.91876 1.21813 1.01794 0.99178 0.98161 1.20822 0.80042 0.92162 0.74183 1.90632 1.55273 1.47996 1.52739 1.48483 1.05131 1.08998 1.71691 1.22206 0.92986 0.85012 1.01077 1.23362 0.94536 1.00247 1.00285 1.21382 0.87853 0.90469 0.94913 0.91400 1.42464 1.01918 1.43846 1.48326 1.19604 0.83624 1.15274 1.18263 0.90297 1.25485 1.01898 0.99276 0.99760 1.69798 1.33891 1.27494 1.30496 0.85151 0.80857 0.77224 0.76982 1.19003 1.22203 1.22550 1.22671 0.86248 0.91240 1.02680 0.92792 0.92994 0.92278 0.91922 0.91628 0.92300 0.92685 0.90978 0.90470 0.92131 0.93186 0.93542 0.91630 0.88736 0.88234 0.90501 0.92115 0.90911 0.95040 0.91650 0.90650 0.92607 0.90008 0.79183 0.94067 0.88996 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.12 -1.58 5.93 30.59 0.18 -1.39 16 3 C -0.12 -1.76 5.21 30.60 0.16 -1.60 16 4 C -0.12 -1.84 4.54 30.60 0.14 -1.70 16 5 C -0.09 -1.88 3.34 30.59 0.10 -1.78 16 6 C -0.07 -1.58 0.31 -52.93 -0.02 -1.60 16 7 C -0.15 -3.37 8.11 71.98 0.58 -2.79 16 8 C -0.13 -2.47 4.40 30.59 0.13 -2.34 16 9 C -0.15 -3.09 9.35 71.98 0.67 -2.41 16 10 C 0.54 16.45 5.00 87.66 0.44 16.89 16 11 O -0.59 -21.75 16.28 -3.03 -0.05 -21.80 16 12 N -0.61 -18.35 3.31 -811.80 -2.69 -21.03 16 13 C 0.11 3.29 6.89 86.85 0.60 3.89 16 14 C -0.14 -4.73 6.77 31.98 0.22 -4.52 16 15 C 0.16 5.83 3.58 46.18 0.17 5.99 16 16 H 0.07 2.38 8.12 -2.39 -0.02 2.37 16 17 N -0.73 -33.43 5.25 -317.33 -1.67 -35.10 16 18 C -0.24 -12.18 9.98 84.03 0.84 -11.34 16 19 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 20 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 21 N -0.97 -56.39 13.06 21.65 0.28 -56.10 16 22 Si 0.97 44.27 29.55 68.60 2.03 46.29 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 26 C 0.09 2.81 4.96 86.73 0.43 3.24 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.07 1.08 6.23 -2.39 -0.01 1.06 16 35 H 0.08 1.07 6.30 -2.39 -0.02 1.05 16 36 H 0.06 1.42 6.57 -2.38 -0.02 1.40 16 37 H 0.05 1.24 8.09 -2.39 -0.02 1.22 16 38 H 0.05 1.14 8.11 -2.39 -0.02 1.12 16 39 H 0.06 1.58 4.98 -2.39 -0.01 1.57 16 40 H 0.09 1.66 5.97 -2.38 -0.01 1.64 16 41 H 0.10 1.54 6.11 -2.39 -0.01 1.52 16 42 H 0.08 1.61 4.52 -2.39 -0.01 1.60 16 43 H 0.06 1.19 6.61 -2.39 -0.02 1.17 16 44 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.03 0.77 7.04 -2.39 -0.02 0.75 16 46 H 0.07 2.01 8.09 -2.39 -0.02 2.00 16 47 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 50 H 0.38 18.63 7.51 -92.71 -0.70 17.93 16 51 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 52 H 0.09 2.44 5.74 -2.39 -0.01 2.42 16 53 H 0.08 2.36 4.90 -2.39 -0.01 2.35 16 Total: -1.00 -62.80 393.16 3.91 -58.89 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.18 Total: 34.87 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 5.82 Total: -6.02 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.07 Total: -112.23 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -62.80 3.91 -58.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690259977.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.416 kcal (2) G-P(sol) polarization free energy of solvation -62.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds