Wall clock time and date at job start Fri Apr 10 2020 22:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46684 * 2 1 4 4 C 1.53006 * 109.47204 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.46977 * 64.99479 * 4 3 2 6 6 C 1.53005 * 109.47355 * 185.31227 * 5 4 3 7 7 C 1.52995 * 109.47268 * 184.94727 * 6 5 4 8 8 C 1.50696 * 109.47296 * 184.99975 * 4 3 2 9 9 O 1.21282 * 120.00178 * 338.95041 * 8 4 3 10 10 N 1.34781 * 119.99746 * 158.95572 * 8 4 3 11 11 C 1.46505 * 119.99760 * 185.37151 * 10 8 4 12 12 C 1.52999 * 109.47000 * 82.88908 * 11 10 8 13 13 H 1.09001 * 109.58907 * 300.43630 * 12 11 10 14 14 C 1.53192 * 109.58493 * 180.15298 * 12 11 10 15 15 C 1.53038 * 109.31527 * 185.57738 * 14 12 11 16 16 C 1.53039 * 109.53939 * 61.36479 * 15 14 12 17 17 C 1.53197 * 109.31200 * 298.63821 * 16 15 14 18 18 N 1.46924 * 109.58928 * 60.86445 * 12 11 10 19 19 C 1.36940 * 120.62851 * 353.41741 * 18 12 11 20 20 H 1.07995 * 120.00108 * 31.15961 * 19 18 12 21 21 C 1.38809 * 119.99676 * 211.15624 * 19 18 12 22 22 N 1.31624 * 120.00434 * 12.19659 * 21 19 18 23 23 Si 1.86803 * 119.99918 * 192.19382 * 21 19 18 24 24 H 1.48497 * 109.47017 * 5.01235 * 23 21 19 25 25 H 1.48500 * 109.46946 * 125.01596 * 23 21 19 26 26 H 1.48509 * 109.46932 * 245.01367 * 23 21 19 27 27 H 1.09001 * 109.46886 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47337 * 299.99998 * 1 2 3 29 29 H 1.08995 * 109.46673 * 60.00361 * 1 2 3 30 30 H 1.08999 * 109.47337 * 240.00001 * 2 1 3 31 31 H 1.08995 * 109.46673 * 119.99639 * 2 1 3 32 32 H 1.09002 * 109.47857 * 60.00329 * 3 2 1 33 33 H 1.09003 * 109.47804 * 299.99607 * 3 2 1 34 34 H 1.09000 * 109.46867 * 304.99818 * 4 3 2 35 35 H 1.08996 * 109.47709 * 305.31337 * 5 4 3 36 36 H 1.09001 * 109.47218 * 65.31210 * 5 4 3 37 37 H 1.09006 * 109.46746 * 304.94727 * 6 5 4 38 38 H 1.08994 * 109.46788 * 64.94503 * 6 5 4 39 39 H 1.09001 * 109.47150 * 304.78256 * 7 6 5 40 40 H 1.09004 * 109.47306 * 64.78311 * 7 6 5 41 41 H 1.09006 * 109.47021 * 184.78097 * 7 6 5 42 42 H 0.96996 * 120.00351 * 5.36476 * 10 8 4 43 43 H 1.08994 * 109.46792 * 202.88946 * 11 10 8 44 44 H 1.08997 * 109.46853 * 322.89006 * 11 10 8 45 45 H 1.09002 * 109.49652 * 305.53059 * 14 12 11 46 46 H 1.09004 * 109.49694 * 65.62417 * 14 12 11 47 47 H 1.09005 * 109.46074 * 181.38662 * 15 14 12 48 48 H 1.09005 * 109.46052 * 301.36135 * 15 14 12 49 49 H 1.09006 * 109.49629 * 58.58401 * 16 15 14 50 50 H 1.08993 * 109.50192 * 178.68362 * 16 15 14 51 51 H 1.08998 * 109.58617 * 174.41762 * 17 16 15 52 52 H 1.08996 * 109.58486 * 294.70523 * 17 16 15 53 53 H 0.96993 * 120.00180 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0795 0.8331 -1.3082 6 6 5.6037 0.7113 -1.2544 7 6 6.1240 0.2178 -2.6059 8 6 4.0723 2.8580 0.1232 9 8 3.3501 3.7860 -0.1739 10 7 5.3242 3.0926 0.5640 11 6 5.7732 4.4676 0.7965 12 6 5.3079 4.9291 2.1791 13 1 4.2203 4.8823 2.2331 14 6 5.7728 6.3681 2.4236 15 6 5.4266 6.7753 3.8576 16 6 6.1575 5.8580 4.8407 17 6 5.6970 4.4131 4.6237 18 7 5.8928 4.0615 3.2106 19 6 6.6074 2.9467 2.8615 20 1 7.1722 2.9336 1.9412 21 6 6.6057 1.8336 3.6908 22 7 5.7408 1.7506 4.6795 23 14 7.8310 0.4530 3.4035 24 1 8.7654 0.8390 2.3159 25 1 8.5981 0.2047 4.6505 26 1 7.1031 -0.7820 3.0158 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8935 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9337 0.8531 0.8410 35 1 3.6406 -0.1553 -1.4437 36 1 3.7955 1.4742 -2.1428 37 1 6.0384 1.6858 -1.0315 38 1 5.8841 0.0018 -0.4760 39 1 5.6254 -0.7153 -2.8684 40 1 5.9181 0.9673 -3.3701 41 1 7.1991 0.0499 -2.5420 42 1 5.9279 2.3512 0.7273 43 1 6.8613 4.5077 0.7472 44 1 5.3505 5.1217 0.0339 45 1 6.8512 6.4318 2.2775 46 1 5.2704 7.0365 1.7242 47 1 5.7343 7.8073 4.0264 48 1 4.3509 6.6873 4.0104 49 1 7.2323 5.9265 4.6719 50 1 5.9290 6.1632 5.8618 51 1 6.2852 3.7439 5.2516 52 1 4.6419 4.3232 4.8818 53 1 5.7399 0.9730 5.2592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690452639.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:02 Heat of formation + Delta-G solvation = -54.197382 kcal Electronic energy + Delta-G solvation = -28417.899720 eV Core-core repulsion = 24902.640193 eV Total energy + Delta-G solvation = -3515.259528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.62318 -37.70996 -36.03372 -34.37158 -33.68513 -33.01279 -30.91493 -30.23427 -29.80624 -26.28349 -25.98527 -25.01435 -23.20979 -22.03953 -21.37625 -21.02856 -20.11497 -19.46066 -18.92111 -16.94028 -16.45766 -15.48527 -15.22770 -14.95817 -14.71287 -14.20275 -13.95663 -13.82193 -13.72633 -13.47135 -13.37363 -13.02856 -12.81374 -12.63948 -12.39413 -12.25241 -12.00266 -11.94115 -11.73703 -11.46628 -11.23224 -11.08332 -10.94710 -10.87013 -10.77711 -10.76030 -10.54618 -10.45687 -10.38597 -10.23762 -10.16687 -10.06713 -9.96266 -9.68333 -9.35290 -8.98374 -8.54323 -8.04567 -6.58294 -5.81451 -3.27787 3.26421 3.35096 3.35363 3.37747 4.00683 4.39681 4.84372 5.03372 5.12839 5.16288 5.24907 5.30407 5.31895 5.35794 5.46486 5.61719 5.64871 5.67364 5.73995 5.74484 5.80564 5.87750 5.92632 5.97664 5.99172 6.02900 6.08876 6.13539 6.19259 6.21147 6.27100 6.29082 6.33916 6.39027 6.42968 6.46267 6.48350 6.55504 6.63678 6.67593 6.78604 6.82009 6.94509 7.11156 7.32708 7.44032 7.64921 7.73863 8.33891 8.43403 9.00596 9.16955 9.81705 10.43354 11.25276 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.010524 B = 0.005444 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.890041 B = 5142.343633 C = 5868.826030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.096 4.096 4 C -0.110 4.110 5 C -0.106 4.106 6 C -0.142 4.142 7 C -0.148 4.148 8 C 0.521 3.479 9 O -0.565 6.565 10 N -0.697 5.697 11 C 0.127 3.873 12 C 0.157 3.843 13 H 0.031 0.969 14 C -0.128 4.128 15 C -0.107 4.107 16 C -0.143 4.143 17 C 0.174 3.826 18 N -0.584 5.584 19 C -0.245 4.245 20 H 0.063 0.937 21 C 0.006 3.994 22 N -0.896 5.896 23 Si 0.887 3.113 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.288 1.288 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.408 0.592 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.042 0.958 48 H 0.051 0.949 49 H 0.052 0.948 50 H 0.044 0.956 51 H 0.085 0.915 52 H 0.014 0.986 53 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 -1.088 -9.212 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.134 4.134 4 C -0.131 4.131 5 C -0.144 4.144 6 C -0.179 4.179 7 C -0.205 4.205 8 C 0.308 3.692 9 O -0.445 6.445 10 N -0.348 5.348 11 C 0.003 3.997 12 C 0.049 3.951 13 H 0.048 0.952 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.182 4.182 17 C 0.048 3.952 18 N -0.307 5.307 19 C -0.375 4.375 20 H 0.080 0.920 21 C -0.193 4.193 22 N -0.540 5.540 23 Si 0.716 3.284 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.215 1.215 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.247 0.753 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.063 0.937 51 H 0.103 0.897 52 H 0.033 0.967 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.711 -0.582 -9.294 9.699 hybrid contribution 0.943 -1.105 0.323 1.489 sum -1.768 -1.687 -8.971 9.298 Atomic orbital electron populations 1.21754 0.96111 1.01108 1.01813 1.21607 0.95642 0.97120 1.01993 1.21352 0.92784 0.96181 1.03063 1.21375 0.97179 0.94601 0.99939 1.21587 0.95490 1.01045 0.96253 1.21804 0.95667 1.02461 0.97989 1.21729 1.00739 1.00818 0.97235 1.20415 0.81903 0.90780 0.76127 1.90602 1.56528 1.45918 1.51411 1.46242 1.13981 1.09515 1.65080 1.21317 0.98956 0.83098 0.96378 1.20868 0.95759 0.89421 0.89063 0.95176 1.21957 1.00665 0.97929 0.96197 1.21360 0.99862 0.97611 0.95682 1.22188 0.99715 0.99429 0.96856 1.20729 0.97937 0.90424 0.86061 1.43975 1.60824 1.25996 0.99951 1.18992 1.20902 0.90653 1.06922 0.92002 1.25105 0.97824 0.96948 0.99439 1.69992 1.35057 1.29227 1.19696 0.86471 0.81252 0.82751 0.77884 1.20155 1.21534 1.21498 0.93109 0.92713 0.92923 0.91980 0.91897 0.91556 0.91423 0.88670 0.90954 0.91752 0.91084 0.91479 0.92967 0.92976 0.92829 0.75314 0.90863 0.91482 0.92439 0.93254 0.93931 0.93018 0.92930 0.93696 0.89700 0.96739 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.13 -1.57 5.70 -26.73 -0.15 -1.72 16 3 C -0.10 -1.45 4.08 -26.73 -0.11 -1.56 16 4 C -0.11 -1.75 2.20 -91.77 -0.20 -1.95 16 5 C -0.11 -1.39 4.54 -26.73 -0.12 -1.51 16 6 C -0.14 -1.83 5.38 -26.73 -0.14 -1.98 16 7 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 8 C 0.52 9.98 6.51 -10.99 -0.07 9.91 16 9 O -0.56 -12.34 15.81 5.56 0.09 -12.26 16 10 N -0.70 -13.17 3.29 -60.29 -0.20 -13.37 16 11 C 0.13 2.40 4.77 -4.04 -0.02 2.38 16 12 C 0.16 3.29 3.12 -67.60 -0.21 3.08 16 13 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.13 -2.31 5.37 -26.61 -0.14 -2.45 16 15 C -0.11 -1.91 5.88 -26.69 -0.16 -2.07 16 16 C -0.14 -2.77 6.08 -26.61 -0.16 -2.94 16 17 C 0.17 4.11 5.26 -3.71 -0.02 4.09 16 18 N -0.58 -13.75 2.98 -164.78 -0.49 -14.24 16 19 C -0.24 -5.95 7.15 -15.06 -0.11 -6.06 16 20 H 0.06 1.44 5.30 -52.49 -0.28 1.16 16 21 C 0.01 0.16 5.01 -17.43 -0.09 0.07 16 22 N -0.90 -24.49 11.13 55.49 0.62 -23.88 16 23 Si 0.89 19.88 29.57 -169.99 -5.03 14.86 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.69 6.45 -51.93 -0.34 0.36 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 34 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.07 0.83 6.33 -51.93 -0.33 0.50 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.00 5.52 -51.93 -0.29 0.72 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.41 7.65 5.18 -40.82 -0.21 7.44 16 43 H 0.07 1.31 7.38 -51.93 -0.38 0.93 16 44 H 0.07 1.23 7.57 -51.93 -0.39 0.84 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 51 H 0.08 2.22 6.14 -51.93 -0.32 1.90 16 52 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 53 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -28.19 395.90 -10.14 -38.33 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -10.12 Total: 9.86 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.97 Total: -5.26 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.07 Total: -51.49 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -28.19 -10.14 -38.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690452639.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.868 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds