Wall clock time and date at job start Fri Apr 10 2020 22:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46684 * 2 1 4 4 C 1.53006 * 109.47204 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.46977 * 64.99479 * 4 3 2 6 6 C 1.53005 * 109.47355 * 185.31227 * 5 4 3 7 7 C 1.52995 * 109.47268 * 184.94727 * 6 5 4 8 8 C 1.50696 * 109.47296 * 184.99975 * 4 3 2 9 9 O 1.21282 * 120.00178 * 338.95041 * 8 4 3 10 10 N 1.34781 * 119.99746 * 158.95572 * 8 4 3 11 11 C 1.46505 * 119.99760 * 185.37151 * 10 8 4 12 12 C 1.52999 * 109.47000 * 82.88908 * 11 10 8 13 13 H 1.09001 * 109.58907 * 300.43630 * 12 11 10 14 14 C 1.53192 * 109.58493 * 180.15298 * 12 11 10 15 15 C 1.53038 * 109.31527 * 185.57738 * 14 12 11 16 16 C 1.53039 * 109.53939 * 61.36479 * 15 14 12 17 17 C 1.53197 * 109.31200 * 298.63821 * 16 15 14 18 18 N 1.46924 * 109.58928 * 60.86445 * 12 11 10 19 19 C 1.36940 * 120.62851 * 353.41741 * 18 12 11 20 20 H 1.07995 * 120.00108 * 31.15961 * 19 18 12 21 21 C 1.38809 * 119.99676 * 211.15624 * 19 18 12 22 22 N 1.31624 * 120.00434 * 12.19659 * 21 19 18 23 23 Si 1.86803 * 119.99918 * 192.19382 * 21 19 18 24 24 H 1.48497 * 109.47017 * 5.01235 * 23 21 19 25 25 H 1.48500 * 109.46946 * 125.01596 * 23 21 19 26 26 H 1.48509 * 109.46932 * 245.01367 * 23 21 19 27 27 H 1.09001 * 109.46886 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47337 * 299.99998 * 1 2 3 29 29 H 1.08995 * 109.46673 * 60.00361 * 1 2 3 30 30 H 1.08999 * 109.47337 * 240.00001 * 2 1 3 31 31 H 1.08995 * 109.46673 * 119.99639 * 2 1 3 32 32 H 1.09002 * 109.47857 * 60.00329 * 3 2 1 33 33 H 1.09003 * 109.47804 * 299.99607 * 3 2 1 34 34 H 1.09000 * 109.46867 * 304.99818 * 4 3 2 35 35 H 1.08996 * 109.47709 * 305.31337 * 5 4 3 36 36 H 1.09001 * 109.47218 * 65.31210 * 5 4 3 37 37 H 1.09006 * 109.46746 * 304.94727 * 6 5 4 38 38 H 1.08994 * 109.46788 * 64.94503 * 6 5 4 39 39 H 1.09001 * 109.47150 * 304.78256 * 7 6 5 40 40 H 1.09004 * 109.47306 * 64.78311 * 7 6 5 41 41 H 1.09006 * 109.47021 * 184.78097 * 7 6 5 42 42 H 0.96996 * 120.00351 * 5.36476 * 10 8 4 43 43 H 1.08994 * 109.46792 * 202.88946 * 11 10 8 44 44 H 1.08997 * 109.46853 * 322.89006 * 11 10 8 45 45 H 1.09002 * 109.49652 * 305.53059 * 14 12 11 46 46 H 1.09004 * 109.49694 * 65.62417 * 14 12 11 47 47 H 1.09005 * 109.46074 * 181.38662 * 15 14 12 48 48 H 1.09005 * 109.46052 * 301.36135 * 15 14 12 49 49 H 1.09006 * 109.49629 * 58.58401 * 16 15 14 50 50 H 1.08993 * 109.50192 * 178.68362 * 16 15 14 51 51 H 1.08998 * 109.58617 * 174.41762 * 17 16 15 52 52 H 1.08996 * 109.58486 * 294.70523 * 17 16 15 53 53 H 0.96993 * 120.00180 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0795 0.8331 -1.3082 6 6 5.6037 0.7113 -1.2544 7 6 6.1240 0.2178 -2.6059 8 6 4.0723 2.8580 0.1232 9 8 3.3501 3.7860 -0.1739 10 7 5.3242 3.0926 0.5640 11 6 5.7732 4.4676 0.7965 12 6 5.3079 4.9291 2.1791 13 1 4.2203 4.8823 2.2331 14 6 5.7728 6.3681 2.4236 15 6 5.4266 6.7753 3.8576 16 6 6.1575 5.8580 4.8407 17 6 5.6970 4.4131 4.6237 18 7 5.8928 4.0615 3.2106 19 6 6.6074 2.9467 2.8615 20 1 7.1722 2.9336 1.9412 21 6 6.6057 1.8336 3.6908 22 7 5.7408 1.7506 4.6795 23 14 7.8310 0.4530 3.4035 24 1 8.7654 0.8390 2.3159 25 1 8.5981 0.2047 4.6505 26 1 7.1031 -0.7820 3.0158 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8935 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9337 0.8531 0.8410 35 1 3.6406 -0.1553 -1.4437 36 1 3.7955 1.4742 -2.1428 37 1 6.0384 1.6858 -1.0315 38 1 5.8841 0.0018 -0.4760 39 1 5.6254 -0.7153 -2.8684 40 1 5.9181 0.9673 -3.3701 41 1 7.1991 0.0499 -2.5420 42 1 5.9279 2.3512 0.7273 43 1 6.8613 4.5077 0.7472 44 1 5.3505 5.1217 0.0339 45 1 6.8512 6.4318 2.2775 46 1 5.2704 7.0365 1.7242 47 1 5.7343 7.8073 4.0264 48 1 4.3509 6.6873 4.0104 49 1 7.2323 5.9265 4.6719 50 1 5.9290 6.1632 5.8618 51 1 6.2852 3.7439 5.2516 52 1 4.6419 4.3232 4.8818 53 1 5.7399 0.9730 5.2592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690452639.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:00 Heat of formation + Delta-G solvation = -67.625390 kcal Electronic energy + Delta-G solvation = -28418.482003 eV Core-core repulsion = 24902.640193 eV Total energy + Delta-G solvation = -3515.841810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.13590 -39.35586 -37.32732 -35.81261 -34.92700 -34.78962 -32.38834 -31.72308 -31.40517 -27.76651 -27.22974 -26.68301 -24.48605 -23.78082 -22.54913 -22.35742 -21.48962 -21.00121 -20.56721 -18.50000 -18.20530 -17.00464 -16.69730 -16.45059 -15.93113 -15.82373 -15.47648 -15.34299 -14.97395 -14.92318 -14.66296 -14.55700 -14.22503 -14.05803 -13.73011 -13.68817 -13.36672 -13.15923 -12.96748 -12.86343 -12.76368 -12.62642 -12.49501 -12.30798 -12.14064 -11.97905 -11.96016 -11.84599 -11.81099 -11.58654 -11.56832 -11.48346 -11.36518 -11.26613 -11.09141 -10.53563 -10.47725 -9.66060 -8.52628 -7.76950 -5.26572 1.46640 1.51998 1.58895 1.81461 2.51699 2.56302 3.38745 3.61467 3.70110 3.82579 3.92099 4.09814 4.15529 4.19746 4.21900 4.25379 4.31222 4.34006 4.42487 4.51102 4.61949 4.63996 4.68654 4.74694 4.80702 4.82839 4.83272 4.87022 4.94158 4.96345 5.00765 5.06252 5.09962 5.11645 5.18904 5.24390 5.27185 5.27809 5.35909 5.36779 5.40606 5.43947 5.46771 5.48903 5.58360 5.70423 5.74794 5.83592 6.45954 6.79807 7.20663 7.45774 7.91451 8.50185 9.29090 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.010524 B = 0.005444 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.890041 B = 5142.343633 C = 5868.826030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.106 4.106 5 C -0.096 4.096 6 C -0.143 4.143 7 C -0.144 4.144 8 C 0.515 3.485 9 O -0.596 6.596 10 N -0.697 5.697 11 C 0.129 3.871 12 C 0.155 3.845 13 H -0.011 1.011 14 C -0.121 4.121 15 C -0.105 4.105 16 C -0.131 4.131 17 C 0.179 3.821 18 N -0.595 5.595 19 C -0.236 4.236 20 H 0.078 0.922 21 C -0.045 4.045 22 N -0.935 5.935 23 Si 0.945 3.055 24 H -0.256 1.256 25 H -0.303 1.303 26 H -0.289 1.289 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.409 0.591 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.040 0.960 49 H 0.056 0.944 50 H 0.061 0.939 51 H 0.055 0.945 52 H -0.020 1.020 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.063 -1.126 -11.276 11.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.129 4.129 4 C -0.127 4.127 5 C -0.134 4.134 6 C -0.181 4.181 7 C -0.201 4.201 8 C 0.303 3.697 9 O -0.478 6.478 10 N -0.347 5.347 11 C 0.004 3.996 12 C 0.048 3.952 13 H 0.007 0.993 14 C -0.160 4.160 15 C -0.142 4.142 16 C -0.170 4.170 17 C 0.053 3.947 18 N -0.319 5.319 19 C -0.366 4.366 20 H 0.095 0.905 21 C -0.240 4.240 22 N -0.581 5.581 23 Si 0.774 3.226 24 H -0.180 1.180 25 H -0.230 1.230 26 H -0.216 1.216 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.248 0.752 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.074 0.926 52 H -0.002 1.002 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.548 -0.603 -11.384 11.505 hybrid contribution 0.532 -1.042 0.984 1.529 sum -1.015 -1.645 -10.400 10.579 Atomic orbital electron populations 1.21753 0.95023 1.02267 1.01666 1.21578 0.96603 0.94966 1.02636 1.21315 0.92241 0.97934 1.01442 1.21400 0.97656 0.92431 1.01235 1.21564 0.95800 1.01897 0.94141 1.21805 0.95357 1.01653 0.99294 1.21695 1.01126 1.01477 0.95788 1.21004 0.81579 0.91838 0.75295 1.90575 1.57203 1.47160 1.52854 1.46274 1.14081 1.09645 1.64725 1.21346 0.99836 0.83238 0.95171 1.20954 0.93373 0.91245 0.89637 0.99290 1.21883 1.01428 0.95766 0.96943 1.21355 0.98977 0.99003 0.94893 1.22023 0.99915 0.96591 0.98518 1.20536 0.95379 0.92818 0.85960 1.44228 1.60851 1.26386 1.00427 1.19358 1.19934 0.90525 1.06789 0.90468 1.25767 0.99449 0.99213 0.99619 1.70177 1.37228 1.29658 1.21071 0.85530 0.79394 0.80134 0.77536 1.17993 1.23019 1.21635 0.91268 0.93842 0.92172 0.89799 0.92664 0.94721 0.91464 0.90112 0.88614 0.91599 0.92545 0.91951 0.91582 0.92622 0.92332 0.75227 0.89247 0.90743 0.91285 0.91148 0.90446 0.94142 0.92503 0.92071 0.92650 1.00221 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.91 71.99 0.71 -2.45 16 2 C -0.12 -2.87 5.70 30.60 0.17 -2.70 16 3 C -0.09 -2.80 4.08 30.59 0.12 -2.67 16 4 C -0.11 -3.40 2.20 -11.54 -0.03 -3.43 16 5 C -0.10 -2.37 4.54 30.59 0.14 -2.23 16 6 C -0.14 -3.47 5.38 30.59 0.16 -3.31 16 7 C -0.14 -2.75 9.91 71.98 0.71 -2.03 16 8 C 0.51 20.05 6.51 87.65 0.57 20.63 16 9 O -0.60 -26.65 15.81 -3.03 -0.05 -26.70 16 10 N -0.70 -26.39 3.29 -463.06 -1.52 -27.91 16 11 C 0.13 4.76 4.77 86.38 0.41 5.18 16 12 C 0.15 6.53 3.12 44.97 0.14 6.67 16 13 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 14 C -0.12 -4.13 5.37 30.67 0.16 -3.97 16 15 C -0.10 -3.53 5.88 30.62 0.18 -3.35 16 16 C -0.13 -5.00 6.08 30.67 0.19 -4.81 16 17 C 0.18 8.71 5.26 86.36 0.45 9.17 16 18 N -0.59 -28.43 2.98 -675.24 -2.01 -30.45 16 19 C -0.24 -11.49 7.15 84.03 0.60 -10.89 16 20 H 0.08 3.49 5.30 -2.91 -0.02 3.48 16 21 C -0.05 -2.33 5.01 84.86 0.43 -1.90 16 22 N -0.93 -53.20 11.13 21.65 0.24 -52.96 16 23 Si 0.95 41.10 29.57 68.60 2.03 43.13 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.65 6.45 -2.39 -0.02 1.63 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 2.05 8.05 -2.39 -0.02 2.03 16 34 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.10 1.92 6.33 -2.39 -0.02 1.91 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.52 5.52 -2.38 -0.01 1.51 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 1.02 8.14 -2.38 -0.02 1.01 16 41 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.41 15.23 5.18 -92.71 -0.48 14.75 16 43 H 0.09 3.02 7.38 -2.39 -0.02 3.00 16 44 H 0.07 2.66 7.57 -2.39 -0.02 2.64 16 45 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 48 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 49 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 50 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.06 3.01 6.14 -2.39 -0.01 3.00 16 52 H -0.02 -1.11 8.14 -2.39 -0.02 -1.12 16 53 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -63.29 395.90 4.20 -59.10 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: 0.37 Total: 37.90 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.14 Total: -2.11 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -3.30 Total: -111.32 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -63.29 4.20 -59.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690452639.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.528 kcal (2) G-P(sol) polarization free energy of solvation -63.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds