Wall clock time and date at job start Fri Apr 10 2020 22:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 9 9 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 10 10 O 1.21273 * 120.00140 * 359.97438 * 9 6 5 11 11 N 1.34779 * 119.99767 * 180.02562 * 9 6 5 12 12 C 1.46496 * 120.00054 * 179.97438 * 11 9 6 13 13 C 1.52997 * 109.47194 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.88846 * 302.57451 * 13 12 11 15 15 C 1.55161 * 111.00288 * 178.65196 * 13 12 11 16 16 C 1.54329 * 102.93751 * 206.42382 * 15 13 12 17 17 N 1.47019 * 107.27591 * 22.19434 * 16 15 13 18 18 C 1.36934 * 125.64915 * 181.02094 * 17 16 15 19 19 H 1.08006 * 119.99612 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00205 * 0.04174 * 18 17 16 21 21 N 1.31615 * 119.99750 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99970 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47461 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47203 * 120.00216 * 22 20 18 25 25 H 1.48499 * 109.47358 * 239.99570 * 22 20 18 26 26 C 1.47426 * 108.69998 * 1.05889 * 17 16 15 27 27 H 1.09001 * 109.46812 * 59.99783 * 1 2 3 28 28 H 1.09000 * 109.47360 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46935 * 300.00125 * 1 2 3 30 30 H 1.09002 * 109.46935 * 239.99874 * 2 1 3 31 31 H 1.09001 * 109.46812 * 120.00216 * 2 1 3 32 32 H 1.09002 * 109.47153 * 60.00008 * 3 2 1 33 33 H 1.09001 * 109.46832 * 300.00199 * 3 2 1 34 34 H 1.09002 * 109.47103 * 59.99753 * 4 3 2 35 35 H 1.08998 * 109.46862 * 300.00565 * 4 3 2 36 36 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 37 37 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 38 38 H 1.09000 * 109.46986 * 60.00203 * 7 6 5 39 39 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 40 40 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 41 41 H 1.08992 * 109.47554 * 59.99639 * 8 6 5 42 42 H 1.09004 * 109.47108 * 179.97438 * 8 6 5 43 43 H 1.09000 * 109.46870 * 299.99783 * 8 6 5 44 44 H 0.97005 * 119.99680 * 359.97438 * 11 9 6 45 45 H 1.08998 * 109.47245 * 300.00495 * 12 11 9 46 46 H 1.09002 * 109.47021 * 59.99873 * 12 11 9 47 47 H 1.08991 * 110.72172 * 324.78446 * 15 13 12 48 48 H 1.08997 * 110.71831 * 88.06467 * 15 13 12 49 49 H 1.08997 * 109.88506 * 262.76939 * 16 15 13 50 50 H 1.09004 * 110.00468 * 141.68674 * 16 15 13 51 51 H 0.97006 * 120.00108 * 180.02562 * 21 20 18 52 52 H 1.09006 * 110.36588 * 217.03207 * 26 17 16 53 53 H 1.09000 * 110.37118 * 94.71296 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.6101 2.8848 -0.0026 7 6 6.1212 2.1638 1.2464 8 6 6.1191 2.1634 -1.2521 9 6 6.1125 4.3057 -0.0026 10 8 5.3244 5.2275 -0.0021 11 7 7.4376 4.5519 -0.0041 12 6 7.9260 5.9330 -0.0047 13 6 9.4559 5.9330 -0.0059 14 1 9.8452 5.3848 0.8521 15 6 10.0121 7.3811 -0.0406 16 6 11.3929 7.2050 -0.7070 17 7 11.3520 5.9497 -1.4712 18 6 12.3883 5.4209 -2.1934 19 1 12.2570 4.4889 -2.7231 20 6 13.6075 6.0826 -2.2445 21 7 13.7676 7.2180 -1.5983 22 14 15.0213 5.3608 -3.2291 23 1 14.5877 4.0869 -3.8571 24 1 15.4284 6.3202 -4.2870 25 1 16.1717 5.1019 -2.3265 26 6 10.0102 5.3551 -1.3320 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9284 0.8891 36 1 3.7172 3.3990 0.8887 37 1 3.7164 3.3984 -0.8913 38 1 5.7578 1.1361 1.2469 39 1 7.2111 2.1640 1.2458 40 1 5.7585 2.6777 2.1366 41 1 5.7550 2.6770 -2.1418 42 1 7.2091 2.1637 -1.2532 43 1 5.7557 1.1357 -1.2516 44 1 8.0679 3.8145 -0.0049 45 1 7.5616 6.4469 -0.8942 46 1 7.5637 6.4469 0.8857 47 1 9.3724 8.0255 -0.6434 48 1 10.1189 7.7774 0.9691 49 1 12.1687 7.1490 0.0566 50 1 11.5927 8.0409 -1.3774 51 1 14.6195 7.6806 -1.6343 52 1 10.0809 4.2690 -1.2723 53 1 9.3761 5.6494 -2.1684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691171571.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:14 Heat of formation + Delta-G solvation = -74.740083 kcal Electronic energy + Delta-G solvation = -26209.862213 eV Core-core repulsion = 22693.711887 eV Total energy + Delta-G solvation = -3516.150326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31320 -39.40078 -37.91555 -36.05489 -35.74817 -34.26987 -31.93792 -31.29389 -29.80978 -28.24357 -27.38378 -27.16964 -25.62391 -24.26784 -22.41997 -21.93059 -21.61097 -21.32460 -19.82768 -18.80377 -17.74318 -17.26555 -16.77342 -16.68696 -16.54290 -16.04089 -15.61804 -15.18116 -15.10337 -14.90835 -14.63402 -14.20661 -14.02905 -13.87351 -13.80073 -13.72684 -13.39377 -13.35298 -13.04350 -12.99874 -12.76180 -12.66601 -12.59207 -12.45095 -12.06962 -12.00131 -11.97954 -11.90625 -11.84999 -11.63477 -11.55413 -11.54584 -11.47087 -11.30671 -11.20935 -10.71789 -10.58207 -10.04847 -8.89789 -7.84976 -5.20500 1.46055 1.47022 1.57300 1.68004 2.22606 2.49477 3.33490 3.60042 3.63034 3.68398 3.84384 3.91271 4.02298 4.02819 4.10601 4.13916 4.24252 4.38183 4.44376 4.45454 4.61408 4.63292 4.70025 4.75439 4.77125 4.79184 4.83654 4.85885 4.91478 4.97132 4.99237 5.04202 5.05785 5.07212 5.15358 5.16470 5.17381 5.23719 5.35640 5.37469 5.38110 5.45365 5.46181 5.49709 5.55691 5.60233 5.67237 5.78012 6.20169 6.58304 7.10405 7.27148 7.78156 8.42698 9.25770 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.025756 B = 0.002238 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.847755 B =12510.576189 C =13262.777662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.090 4.090 6 C -0.075 4.075 7 C -0.141 4.141 8 C -0.142 4.142 9 C 0.516 3.484 10 O -0.587 6.587 11 N -0.716 5.716 12 C 0.144 3.856 13 C -0.095 4.095 14 H 0.090 0.910 15 C -0.123 4.123 16 C 0.183 3.817 17 N -0.628 5.628 18 C -0.240 4.240 19 H 0.085 0.915 20 C -0.070 4.070 21 N -0.952 5.952 22 Si 0.979 3.021 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.292 1.292 26 C 0.140 3.860 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.411 0.589 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.013 0.987 50 H 0.003 0.997 51 H 0.246 0.754 52 H 0.050 0.950 53 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.982 -15.305 6.216 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.153 4.153 5 C -0.128 4.128 6 C -0.079 4.079 7 C -0.198 4.198 8 C -0.200 4.200 9 C 0.304 3.696 10 O -0.468 6.468 11 N -0.367 5.367 12 C 0.019 3.981 13 C -0.114 4.114 14 H 0.108 0.892 15 C -0.162 4.162 16 C 0.058 3.942 17 N -0.355 5.355 18 C -0.369 4.369 19 H 0.103 0.897 20 C -0.263 4.263 21 N -0.602 5.602 22 Si 0.807 3.193 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.219 1.219 26 C 0.015 3.985 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.111 0.889 44 H 0.248 0.752 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.031 0.969 50 H 0.021 0.979 51 H 0.055 0.945 52 H 0.069 0.931 53 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -22.324 -14.610 6.157 27.381 hybrid contribution 1.423 0.249 -0.672 1.594 sum -20.901 -14.361 5.485 25.945 Atomic orbital electron populations 1.21799 0.95974 1.01835 1.01655 1.21524 0.95845 0.96350 1.02326 1.21609 0.95505 0.97128 1.01600 1.21712 0.95221 0.95067 1.03262 1.21354 0.91873 0.97868 1.01702 1.20817 0.97372 0.90233 0.99428 1.21943 1.01767 1.01505 0.94579 1.21951 1.01719 1.01555 0.94747 1.21241 0.81862 0.92225 0.74308 1.90657 1.56404 1.48003 1.51706 1.46009 1.07204 1.09092 1.74429 1.21126 0.92013 0.83226 1.01688 1.22414 0.93179 0.97374 0.98481 0.89175 1.22723 0.96266 0.95930 1.01284 1.20917 0.93034 0.87506 0.92775 1.44810 1.09189 1.23767 1.57699 1.19522 0.90280 1.04491 1.22596 0.89723 1.25680 1.00554 0.97923 1.02111 1.70203 1.24228 1.18114 1.47637 0.85002 0.78980 0.77764 0.77542 1.18733 1.22242 1.21890 1.21725 0.85480 0.96665 0.94671 0.93042 0.92258 0.92923 0.91752 0.91578 0.92555 0.92784 0.90716 0.90422 0.92846 0.93223 0.88987 0.91322 0.92753 0.93234 0.91488 0.88895 0.75240 0.92701 0.91084 0.91285 0.89639 0.96855 0.97864 0.94496 0.93150 0.96607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.30 5.93 30.60 0.18 -1.11 16 3 C -0.12 -1.54 5.21 30.59 0.16 -1.38 16 4 C -0.12 -1.43 4.51 30.59 0.14 -1.29 16 5 C -0.09 -1.64 3.56 30.59 0.11 -1.53 16 6 C -0.08 -1.33 0.64 -52.93 -0.03 -1.37 16 7 C -0.14 -1.87 8.02 71.98 0.58 -1.29 16 8 C -0.14 -2.12 8.02 71.98 0.58 -1.54 16 9 C 0.52 13.20 6.48 87.66 0.57 13.76 16 10 O -0.59 -19.98 15.98 -3.01 -0.05 -20.03 16 11 N -0.72 -16.99 5.19 -463.07 -2.40 -19.39 16 12 C 0.14 3.94 5.12 86.38 0.44 4.38 16 13 C -0.09 -2.96 3.10 -9.40 -0.03 -2.99 16 14 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 15 C -0.12 -4.39 6.42 31.79 0.20 -4.19 16 16 C 0.18 9.03 5.38 86.73 0.47 9.50 16 17 N -0.63 -31.91 3.39 -691.97 -2.35 -34.26 16 18 C -0.24 -13.34 10.28 84.03 0.86 -12.47 16 19 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 20 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 21 N -0.95 -57.70 10.31 21.65 0.22 -57.48 16 22 Si 0.98 45.66 29.55 68.60 2.03 47.68 16 23 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 26 C 0.14 5.38 6.41 86.86 0.56 5.93 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.81 6.43 -2.39 -0.02 0.79 16 35 H 0.08 0.79 6.43 -2.39 -0.02 0.77 16 36 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 38 H 0.09 0.85 6.43 -2.39 -0.02 0.83 16 39 H 0.07 0.83 7.56 -2.39 -0.02 0.81 16 40 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.95 7.56 -2.38 -0.02 0.93 16 43 H 0.09 0.98 6.43 -2.39 -0.02 0.96 16 44 H 0.41 8.11 7.17 -92.70 -0.66 7.45 16 45 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 46 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 48 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 49 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 50 H 0.00 0.18 7.50 -2.38 -0.02 0.16 16 51 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 52 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 53 H 0.02 0.64 8.00 -2.39 -0.02 0.62 16 Total: -1.00 -70.61 405.46 3.59 -67.02 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.18 Total: 16.46 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 5.96 Total: 0.00 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -4.53 Total: -111.13 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.05 Total: -20.03 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.61 3.59 -67.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691171571.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.720 kcal (2) G-P(sol) polarization free energy of solvation -70.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds