Wall clock time and date at job start Fri Apr 10 2020 22:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47108 * 2 1 4 4 C 1.53005 * 109.47233 * 119.99977 * 2 1 3 5 5 C 1.52999 * 109.47183 * 68.88162 * 4 2 1 6 6 C 1.53001 * 109.47133 * 53.05143 * 5 4 2 7 7 C 1.52997 * 109.47330 * 293.05261 * 5 4 2 8 8 C 1.50702 * 109.46986 * 173.05522 * 5 4 2 9 9 O 1.21279 * 120.00391 * 359.97438 * 8 5 4 10 10 N 1.34774 * 119.99857 * 180.02562 * 8 5 4 11 11 C 1.46502 * 120.00239 * 179.97438 * 10 8 5 12 12 C 1.52999 * 109.47369 * 179.97438 * 11 10 8 13 13 H 1.09001 * 110.01612 * 306.39494 * 12 11 10 14 14 C 1.53874 * 110.03250 * 67.83210 * 12 11 10 15 15 C 1.54266 * 106.60075 * 119.28448 * 14 12 11 16 16 C 1.54886 * 104.19349 * 23.61083 * 15 14 12 17 17 H 1.08997 * 110.91756 * 80.44826 * 16 15 14 18 18 N 1.46504 * 110.75913 * 203.74627 * 16 15 14 19 19 C 1.36940 * 119.99614 * 268.33088 * 18 16 15 20 20 H 1.07998 * 120.00035 * 359.72085 * 19 18 16 21 21 C 1.38811 * 119.99626 * 179.97438 * 19 18 16 22 22 N 1.31615 * 120.00178 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99689 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47259 * 60.00673 * 23 21 19 25 25 H 1.48501 * 109.47009 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47495 * 300.00248 * 23 21 19 27 27 C 1.54266 * 110.03315 * 184.99682 * 12 11 10 28 28 H 1.09003 * 109.47386 * 271.38172 * 1 2 3 29 29 H 1.08996 * 109.47193 * 31.38408 * 1 2 3 30 30 H 1.08998 * 109.47072 * 151.38673 * 1 2 3 31 31 H 1.09005 * 109.47484 * 239.99485 * 2 1 3 32 32 H 1.08997 * 109.47661 * 64.80164 * 3 2 1 33 33 H 1.09004 * 109.47111 * 184.80049 * 3 2 1 34 34 H 1.09001 * 109.47300 * 304.79763 * 3 2 1 35 35 H 1.09000 * 109.46955 * 308.88037 * 4 2 1 36 36 H 1.08997 * 109.47280 * 188.88236 * 4 2 1 37 37 H 1.09004 * 109.47170 * 172.85803 * 6 5 4 38 38 H 1.08998 * 109.47337 * 292.86401 * 6 5 4 39 39 H 1.09001 * 109.46665 * 52.86166 * 6 5 4 40 40 H 1.08998 * 109.47058 * 325.18169 * 7 5 4 41 41 H 1.09003 * 109.47259 * 85.17744 * 7 5 4 42 42 H 1.08999 * 109.47335 * 205.17838 * 7 5 4 43 43 H 0.97007 * 120.00454 * 359.97438 * 10 8 5 44 44 H 1.09001 * 109.46974 * 59.99493 * 11 10 8 45 45 H 1.08997 * 109.46727 * 299.99854 * 11 10 8 46 46 H 1.09003 * 110.03407 * 238.56950 * 14 12 11 47 47 H 1.09004 * 110.03332 * 359.95025 * 14 12 11 48 48 H 1.09001 * 110.48438 * 264.93782 * 15 14 12 49 49 H 1.08991 * 110.48823 * 142.29152 * 15 14 12 50 50 H 0.96998 * 119.99872 * 88.32440 * 18 16 15 51 51 H 0.97002 * 120.00406 * 179.97438 * 22 21 19 52 52 H 1.09008 * 110.48339 * 98.42713 * 27 12 11 53 53 H 1.08998 * 110.48208 * 335.78952 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.7200 -2.2136 1.1429 6 6 2.2565 -2.7571 -0.1829 7 6 0.2046 -2.4157 1.2010 8 6 2.3690 -2.9493 2.2869 9 8 3.0235 -2.3400 3.1063 10 7 2.2231 -4.2844 2.3989 11 6 2.8544 -4.9997 3.5106 12 6 2.5343 -6.4920 3.4044 13 1 1.4566 -6.6382 3.3313 14 6 3.2336 -7.0948 2.1733 15 6 4.1867 -8.1879 2.6991 16 6 3.5828 -8.5927 4.0667 17 1 2.7509 -9.2847 3.9352 18 7 4.6084 -9.1761 4.9351 19 6 4.8148 -10.5298 4.9369 20 1 4.2185 -11.1679 4.3016 21 6 5.7870 -11.0825 5.7593 22 7 6.5100 -10.3055 6.5376 23 14 6.0681 -12.9292 5.7623 24 1 6.4565 -13.3731 4.3995 25 1 7.1536 -13.2631 6.7191 26 1 4.8182 -13.6196 6.1703 27 6 3.0869 -7.2400 4.6352 28 1 -0.3634 0.0248 1.0274 29 1 -0.3633 0.8773 -0.5352 30 1 -0.3633 -0.9021 -0.4921 31 1 1.8934 -0.5139 -0.8900 32 1 1.7486 1.9309 0.9298 33 1 3.1266 1.4437 -0.0860 34 1 1.6081 1.9805 -0.8439 35 1 1.5529 -0.3072 2.1321 36 1 3.1183 -0.5859 1.3322 37 1 2.1425 -3.8409 -0.2041 38 1 1.6979 -2.3167 -1.0087 39 1 3.3115 -2.5007 -0.2802 40 1 -0.2349 -1.6781 1.8724 41 1 -0.2166 -2.2950 0.2029 42 1 -0.0145 -3.4181 1.5690 43 1 1.6999 -4.7718 1.7433 44 1 2.4723 -4.6128 4.4553 45 1 3.9340 -4.8554 3.4691 46 1 2.4954 -7.5342 1.5024 47 1 3.8003 -6.3239 1.6511 48 1 5.1919 -7.7870 2.8296 49 1 4.2003 -9.0408 2.0206 50 1 5.1413 -8.6034 5.5086 51 1 7.1891 -10.6917 7.1126 52 1 2.2977 -7.4011 5.3697 53 1 3.9144 -6.6860 5.0784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691938247.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:25 Heat of formation + Delta-G solvation = -80.930350 kcal Electronic energy + Delta-G solvation = -26396.621639 eV Core-core repulsion = 22880.202883 eV Total energy + Delta-G solvation = -3516.418756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46053 -39.63636 -38.33523 -36.33417 -35.12364 -34.13821 -32.48793 -30.25841 -29.07086 -28.80721 -27.74756 -27.22952 -26.02142 -24.86477 -23.49612 -21.52496 -20.95869 -20.66540 -19.82150 -19.13034 -17.79551 -17.28520 -16.90433 -16.73668 -16.28603 -15.85313 -15.71028 -15.36536 -15.07763 -14.87635 -14.46365 -14.38044 -14.20108 -14.00673 -13.69810 -13.59174 -13.33611 -13.16845 -13.03549 -12.94909 -12.77646 -12.66212 -12.54004 -12.40302 -12.16156 -11.99035 -11.88927 -11.83441 -11.77266 -11.64940 -11.54712 -11.49630 -11.37972 -11.24272 -11.22748 -10.88798 -10.54558 -10.06832 -8.98368 -7.93796 -5.22201 1.46484 1.49778 1.55836 1.66606 2.19489 2.56802 3.37993 3.60032 3.67532 3.71598 3.79339 3.80488 3.90182 4.15031 4.23390 4.24646 4.29772 4.37551 4.46615 4.50511 4.61812 4.64476 4.71305 4.72654 4.78232 4.79188 4.79727 4.85017 4.89483 4.94931 5.00518 5.07672 5.08356 5.09781 5.13001 5.13170 5.18195 5.20093 5.34993 5.36613 5.38587 5.41947 5.47877 5.50078 5.56345 5.57249 5.63226 5.63649 6.28582 6.59215 7.28757 7.33570 8.12392 8.33945 9.29742 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.040241 B = 0.002093 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.639254 B =13374.142659 C =13538.900799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.087 4.087 5 C -0.074 4.074 6 C -0.141 4.141 7 C -0.148 4.148 8 C 0.513 3.487 9 O -0.592 6.592 10 N -0.712 5.712 11 C 0.133 3.867 12 C -0.083 4.083 13 H 0.104 0.896 14 C -0.106 4.106 15 C -0.139 4.139 16 C 0.165 3.835 17 H 0.057 0.943 18 N -0.737 5.737 19 C -0.239 4.239 20 H 0.078 0.922 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.974 3.026 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.276 1.276 27 C -0.118 4.118 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.415 0.585 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.036 0.964 49 H 0.051 0.949 50 H 0.370 0.630 51 H 0.250 0.750 52 H 0.069 0.931 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.238 19.911 -18.764 32.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.125 4.125 5 C -0.077 4.077 6 C -0.199 4.199 7 C -0.205 4.205 8 C 0.300 3.700 9 O -0.472 6.472 10 N -0.364 5.364 11 C 0.009 3.991 12 C -0.102 4.102 13 H 0.122 0.878 14 C -0.144 4.144 15 C -0.180 4.180 16 C 0.056 3.944 17 H 0.076 0.924 18 N -0.375 5.375 19 C -0.371 4.371 20 H 0.095 0.905 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.803 3.197 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.202 1.202 27 C -0.157 4.157 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.081 0.919 43 H 0.253 0.747 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.055 0.945 49 H 0.070 0.930 50 H 0.202 0.798 51 H 0.058 0.942 52 H 0.087 0.913 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.805 20.128 -18.206 31.922 hybrid contribution 1.049 -0.988 0.797 1.646 sum -15.756 19.140 -17.409 30.293 Atomic orbital electron populations 1.22288 0.94214 1.02623 1.02021 1.21208 0.96798 0.95811 0.97527 1.21889 1.00724 0.96198 1.01826 1.21522 1.00333 0.92394 0.98267 1.20797 0.97874 0.95583 0.93431 1.22010 1.01261 1.01915 0.94685 1.22364 0.91048 1.02382 1.04673 1.21329 0.79595 0.82391 0.86642 1.90682 1.42908 1.68417 1.45242 1.45914 1.53722 1.07276 1.29456 1.21309 0.96922 0.91349 0.89519 1.21819 1.01583 0.91709 0.95055 0.87807 1.22132 0.98324 0.97259 0.96720 1.22900 0.98511 0.98126 0.98446 1.21474 0.90329 0.92942 0.89662 0.92449 1.42626 1.41863 1.04363 1.48672 1.19640 1.14096 0.85090 1.18268 0.90458 1.25603 0.99601 1.02251 0.99867 1.69823 1.26539 1.35590 1.30383 0.85201 0.77141 0.80214 0.77161 1.20396 1.22420 1.20232 1.22514 1.00116 0.95682 0.97403 0.92860 0.92579 0.90468 0.89627 0.93418 0.93396 0.91517 0.93018 0.93681 0.90956 0.88738 0.93249 0.92118 0.88125 0.91946 0.74724 0.92577 0.93593 0.89331 0.91574 0.94467 0.92969 0.79812 0.94152 0.91253 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.95 71.98 0.57 -0.72 16 2 C -0.10 -1.07 2.62 -10.79 -0.03 -1.10 16 3 C -0.15 -1.77 9.07 71.98 0.65 -1.12 16 4 C -0.09 -1.48 3.21 30.60 0.10 -1.39 16 5 C -0.07 -1.09 0.65 -52.93 -0.03 -1.12 16 6 C -0.14 -1.50 7.59 71.98 0.55 -0.96 16 7 C -0.15 -1.45 7.32 71.98 0.53 -0.92 16 8 C 0.51 11.81 6.45 87.66 0.57 12.37 16 9 O -0.59 -19.81 15.88 -3.03 -0.05 -19.86 16 10 N -0.71 -13.50 4.87 -463.06 -2.25 -15.76 16 11 C 0.13 3.22 4.68 86.38 0.40 3.63 16 12 C -0.08 -1.86 2.96 -10.07 -0.03 -1.89 16 13 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 14 C -0.11 -2.43 6.18 31.32 0.19 -2.24 16 15 C -0.14 -4.70 6.51 31.67 0.21 -4.50 16 16 C 0.16 6.34 3.56 46.28 0.16 6.50 16 17 H 0.06 2.19 8.09 -2.39 -0.02 2.17 16 18 N -0.74 -37.70 5.23 -316.85 -1.66 -39.36 16 19 C -0.24 -13.38 9.96 84.03 0.84 -12.54 16 20 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 21 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 22 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 23 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 27 C -0.12 -3.72 5.98 31.67 0.19 -3.53 16 28 H 0.05 0.53 6.30 -2.39 -0.02 0.51 16 29 H 0.06 0.43 7.76 -2.39 -0.02 0.41 16 30 H 0.08 0.41 5.67 -2.39 -0.01 0.40 16 31 H 0.09 0.80 5.98 -2.38 -0.01 0.78 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.07 0.62 8.01 -2.39 -0.02 0.60 16 35 H 0.05 1.03 7.72 -2.39 -0.02 1.01 16 36 H 0.04 0.98 7.87 -2.39 -0.02 0.96 16 37 H 0.07 0.61 7.37 -2.39 -0.02 0.59 16 38 H 0.09 0.59 6.39 -2.39 -0.02 0.57 16 39 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.69 6.41 -2.39 -0.02 0.67 16 41 H 0.10 0.53 5.22 -2.39 -0.01 0.51 16 42 H 0.06 0.55 7.09 -2.39 -0.02 0.54 16 43 H 0.42 5.12 7.11 -92.70 -0.66 4.46 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.07 1.45 7.61 -2.38 -0.02 1.43 16 48 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.37 20.65 7.76 -92.71 -0.72 19.93 16 51 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 52 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 53 H 0.05 1.80 7.73 -2.39 -0.02 1.78 16 Total: -1.00 -72.50 397.77 3.19 -69.31 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -0.50 Total: 31.37 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 5.33 Total: -13.80 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -3.63 Total: -115.64 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.05 Total: -19.86 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -72.50 3.19 -69.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691938247.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.615 kcal (2) G-P(sol) polarization free energy of solvation -72.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds