Wall clock time and date at job start Fri Apr 10 2020 22:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99561 * 2 1 4 4 C 1.52997 * 109.46780 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47466 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47298 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47260 * 180.02562 * 7 6 5 9 9 C 1.36748 * 127.13785 * 273.77744 * 8 7 6 10 10 C 1.50697 * 126.34529 * 359.97438 * 9 8 7 11 11 N 1.30289 * 107.30662 * 180.02562 * 9 8 7 12 12 N 1.28535 * 110.05213 * 359.72243 * 11 9 8 13 13 C 1.31221 * 109.86087 * 0.45624 * 12 11 9 14 14 N 1.38574 * 126.47275 * 179.82332 * 13 12 11 15 15 C 1.46907 * 110.99791 * 305.48710 * 14 13 12 16 16 C 1.46899 * 111.00178 * 69.43747 * 14 13 12 17 17 H 1.09001 * 109.47199 * 54.99728 * 16 14 13 18 18 C 1.53001 * 109.47081 * 295.00248 * 16 14 13 19 19 C 1.50698 * 109.47351 * 175.00144 * 16 14 13 20 20 H 1.08001 * 119.99854 * 35.14551 * 19 16 14 21 21 C 1.37873 * 120.00173 * 215.14910 * 19 16 14 22 22 N 1.31512 * 119.99998 * 177.20028 * 21 19 16 23 23 Si 1.86801 * 119.99876 * 357.19377 * 21 19 16 24 24 H 1.48493 * 109.47122 * 84.80344 * 23 21 19 25 25 H 1.48502 * 109.46953 * 204.80378 * 23 21 19 26 26 H 1.48504 * 109.47300 * 324.80108 * 23 21 19 27 27 H 1.09000 * 109.46816 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47317 * 299.99732 * 1 2 3 29 29 H 1.09001 * 109.47356 * 60.00522 * 1 2 3 30 30 H 1.09003 * 109.46976 * 59.99935 * 3 2 1 31 31 H 1.08994 * 109.47377 * 299.99785 * 3 2 1 32 32 H 1.09003 * 109.47045 * 60.00436 * 4 3 2 33 33 H 1.08994 * 109.48088 * 300.00429 * 4 3 2 34 34 H 1.09003 * 109.46763 * 60.00311 * 5 4 3 35 35 H 1.09004 * 109.47105 * 300.00351 * 5 4 3 36 36 H 1.09003 * 109.46824 * 59.99800 * 6 5 4 37 37 H 1.08996 * 109.47141 * 300.00655 * 6 5 4 38 38 H 1.09003 * 109.46900 * 59.99916 * 7 6 5 39 39 H 1.09005 * 109.47370 * 300.00345 * 7 6 5 40 40 H 1.09008 * 109.47100 * 90.00428 * 10 9 8 41 41 H 1.08996 * 109.47500 * 210.00302 * 10 9 8 42 42 H 1.09004 * 109.47471 * 330.00222 * 10 9 8 43 43 H 1.08995 * 109.47449 * 58.56490 * 15 14 13 44 44 H 1.08998 * 109.46887 * 178.56877 * 15 14 13 45 45 H 1.09007 * 109.46713 * 298.56571 * 15 14 13 46 46 H 1.09005 * 109.47064 * 302.05621 * 18 16 14 47 47 H 1.08997 * 109.47876 * 62.05764 * 18 16 14 48 48 H 1.09000 * 109.47327 * 182.06120 * 18 16 14 49 49 H 0.97001 * 120.00024 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5825 0.0000 6 6 5.6829 2.4618 0.0000 7 6 6.3051 3.8595 0.0000 8 7 7.7655 3.7440 -0.0006 9 6 8.5833 3.6070 1.0868 10 6 8.1493 3.5462 2.5286 11 7 9.8073 3.5400 0.6453 12 7 9.8180 3.6188 -0.6376 13 6 8.5920 3.7511 -1.0864 14 7 8.2086 3.8696 -2.4127 15 6 8.9185 4.9756 -3.0691 16 6 8.4166 2.6078 -3.1356 17 1 7.8956 1.8024 -2.6181 18 6 9.9129 2.2934 -3.1926 19 6 7.8767 2.7367 -4.5367 20 1 7.9516 3.6786 -5.0597 21 6 7.2872 1.6521 -5.1508 22 7 6.7669 1.7791 -6.3519 23 14 7.2277 0.0023 -4.2767 24 1 6.0464 -0.0395 -3.3780 25 1 7.1242 -1.0866 -5.2812 26 1 8.4654 -0.1788 -3.4762 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8574 0.6437 -0.8892 33 1 3.8568 0.6440 0.8907 34 1 3.8357 3.1239 0.8896 35 1 3.8363 3.1229 -0.8904 36 1 6.0045 1.9205 -0.8898 37 1 6.0046 1.9212 0.8901 38 1 5.9834 4.4004 0.8900 39 1 5.9834 4.4005 -0.8900 40 1 7.9635 2.5093 2.8087 41 1 8.9346 3.9585 3.1622 42 1 7.2359 4.1268 2.6580 43 1 9.9932 4.8044 -3.0084 44 1 8.6178 5.0302 -4.1154 45 1 8.6711 5.9129 -2.5705 46 1 10.4388 3.1158 -3.6777 47 1 10.2959 2.1641 -2.1803 48 1 10.0701 1.3764 -3.7604 49 1 6.3518 1.0162 -6.7838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001697963922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:30 Heat of formation + Delta-G solvation = 11.342256 kcal Electronic energy + Delta-G solvation = -26997.124887 eV Core-core repulsion = 23381.167027 eV Total energy + Delta-G solvation = -3615.957859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.211 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.94480 -39.13260 -39.03853 -37.45605 -35.13357 -34.80389 -32.87531 -31.68921 -31.13173 -28.50437 -27.90566 -27.30135 -26.88061 -26.23318 -23.55861 -23.03990 -22.11360 -21.67166 -20.91557 -19.11707 -17.86677 -17.61729 -17.31395 -17.22506 -16.81923 -16.48898 -16.21695 -15.96887 -15.51514 -15.36560 -14.91306 -14.55280 -14.42587 -14.24810 -13.86009 -13.67683 -13.54928 -13.40917 -13.31709 -13.21671 -13.04779 -12.82501 -12.67904 -12.55348 -12.42181 -12.27999 -12.17387 -12.09486 -11.89724 -11.82376 -11.59016 -11.44539 -11.13365 -10.91408 -10.82809 -10.63319 -9.94349 -9.51851 -8.34121 -6.36706 0.77213 1.23613 1.29216 1.36793 1.39697 1.83251 2.26094 2.75330 2.85743 3.21128 3.53303 3.66931 3.82506 3.95130 3.97888 4.09305 4.13918 4.29197 4.32642 4.34401 4.40722 4.48348 4.50779 4.54985 4.59768 4.61761 4.66672 4.71289 4.74335 4.80330 4.82085 4.83291 4.87445 4.96409 4.99317 5.00656 5.08082 5.10461 5.16487 5.32023 5.32934 5.34055 5.49120 5.79172 5.96934 6.16267 6.23392 6.60006 6.68271 7.26899 7.77692 8.80847 Molecular weight = 310.21amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.005341 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.176719 B = 5241.452945 C = 7650.251168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.426 6.426 3 C 0.061 3.939 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.128 4.128 7 C 0.110 3.890 8 N -0.466 5.466 9 C 0.180 3.820 10 C -0.059 4.059 11 N -0.339 5.339 12 N -0.347 5.347 13 C 0.344 3.656 14 N -0.461 5.461 15 C 0.049 3.951 16 C 0.205 3.795 17 H 0.026 0.974 18 C -0.167 4.167 19 C -0.499 4.499 20 H 0.060 0.940 21 C 0.036 3.964 22 N -0.932 5.932 23 Si 0.918 3.082 24 H -0.267 1.267 25 H -0.282 1.282 26 H -0.263 1.263 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.081 0.919 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.034 0.966 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.046 0.954 48 H 0.041 0.959 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.163 3.071 20.095 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.346 6.346 3 C -0.016 4.016 4 C -0.158 4.158 5 C -0.138 4.138 6 C -0.167 4.167 7 C -0.011 4.011 8 N -0.159 5.159 9 C -0.088 4.088 10 C -0.118 4.118 11 N -0.180 5.180 12 N -0.190 5.190 13 C -0.014 4.014 14 N -0.187 5.187 15 C -0.098 4.098 16 C 0.098 3.902 17 H 0.044 0.956 18 C -0.227 4.227 19 C -0.537 4.537 20 H 0.078 0.922 21 C -0.164 4.164 22 N -0.572 5.572 23 Si 0.743 3.257 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.187 1.187 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.155 0.845 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.052 0.948 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.177 2.813 19.932 22.556 hybrid contribution -0.595 -0.929 -0.780 1.351 sum -10.772 1.884 19.152 22.054 Atomic orbital electron populations 1.22918 0.79488 1.03688 1.00968 1.87844 1.21620 1.29444 1.95650 1.22629 0.93391 0.84210 1.01330 1.21501 0.93878 0.98180 1.02248 1.21321 0.92042 0.96186 1.04258 1.21860 0.96953 0.95857 1.02019 1.22165 0.73235 0.99137 1.06600 1.46643 1.09917 1.53851 1.05477 1.25775 0.86560 1.02748 0.93732 1.20460 1.04001 1.05263 0.82054 1.73870 1.19639 1.21151 1.03321 1.74560 1.19076 1.21352 1.04032 1.22841 0.85884 1.02875 0.89781 1.59290 1.56241 1.08055 0.95081 1.22244 0.96175 0.91368 1.00034 1.19460 0.92426 0.85723 0.92571 0.95648 1.22541 0.99078 1.00912 1.00129 1.20972 1.37401 0.98489 0.96846 0.92230 1.25481 0.94120 1.01425 0.95373 1.69966 1.39216 1.32279 1.15699 0.86207 0.79481 0.80911 0.79081 1.19181 1.20722 1.18708 0.88914 0.92401 0.93633 0.90756 0.93220 0.94273 0.90612 0.87629 0.91550 0.95153 0.90075 0.84519 0.88772 0.88346 0.87957 0.87347 0.94775 0.90205 0.91122 0.92751 0.93509 0.93995 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.43 -9.81 10.70 -148.98 -1.59 -11.41 16 3 C 0.06 1.14 5.94 71.98 0.43 1.56 16 4 C -0.12 -2.53 5.58 30.59 0.17 -2.36 16 5 C -0.10 -1.73 5.21 30.60 0.16 -1.57 16 6 C -0.13 -2.91 5.54 30.59 0.17 -2.74 16 7 C 0.11 2.41 5.99 86.38 0.52 2.93 16 8 N -0.47 -14.27 2.81 -514.86 -1.45 -15.72 16 9 C 0.18 5.13 8.07 137.64 1.11 6.24 16 10 C -0.06 -0.87 10.26 71.23 0.73 -0.14 16 11 N -0.34 -12.82 12.18 -49.54 -0.60 -13.42 16 12 N -0.35 -14.75 9.80 -58.01 -0.57 -15.32 16 13 C 0.34 13.62 6.22 260.11 1.62 15.23 16 14 N -0.46 -19.67 4.77 -710.99 -3.39 -23.06 16 15 C 0.05 1.94 8.71 127.69 1.11 3.05 16 16 C 0.20 9.90 1.91 44.17 0.08 9.98 16 17 H 0.03 1.29 5.61 -2.39 -0.01 1.28 16 18 C -0.17 -7.86 8.28 71.98 0.60 -7.26 16 19 C -0.50 -27.44 8.65 25.60 0.22 -27.21 16 20 H 0.06 3.52 6.27 -2.91 -0.02 3.50 16 21 C 0.04 2.02 5.47 84.65 0.46 2.48 16 22 N -0.93 -56.05 13.96 21.45 0.30 -55.75 16 23 Si 0.92 44.57 26.45 68.60 1.81 46.38 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 26 H -0.26 -12.55 6.54 99.48 0.65 -11.89 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.14 1.66 7.37 -2.39 -0.02 1.64 16 39 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.11 0.88 7.35 -2.38 -0.02 0.86 16 43 H 0.03 1.37 6.39 -2.39 -0.02 1.36 16 44 H 0.08 3.34 6.03 -2.39 -0.01 3.33 16 45 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 46 H 0.05 2.48 6.40 -2.38 -0.02 2.46 16 47 H 0.05 2.19 6.03 -2.39 -0.01 2.17 16 48 H 0.04 1.98 7.29 -2.39 -0.02 1.96 16 49 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -74.97 387.43 4.00 -70.97 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.86 Total: 15.48 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 8.63 Total: 1.84 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -5.71 Total: -123.27 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -1.59 Total: -11.41 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.81 Total: 46.38 kcal Total: -74.97 4.00 -70.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001697963922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.313 kcal (2) G-P(sol) polarization free energy of solvation -74.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds