Wall clock time and date at job start Fri Apr 10 2020 22:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00720 * 2 1 4 4 C 1.52998 * 109.47363 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46717 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46690 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47123 * 179.97438 * 6 5 4 8 8 N 1.46495 * 109.47167 * 175.12195 * 7 6 5 9 9 C 1.36738 * 127.13875 * 84.27961 * 8 7 6 10 10 C 1.50705 * 126.34626 * 359.95004 * 9 8 7 11 11 N 1.30294 * 107.30642 * 179.97438 * 9 8 7 12 12 N 1.28527 * 110.05342 * 0.02562 * 11 9 8 13 13 C 1.31218 * 109.85910 * 359.74177 * 12 11 9 14 14 N 1.38580 * 126.47077 * 180.25533 * 13 12 11 15 15 C 1.46895 * 111.00445 * 260.82548 * 14 13 12 16 16 C 1.46899 * 110.99898 * 24.78091 * 14 13 12 17 17 H 1.08999 * 109.47296 * 299.99409 * 16 14 13 18 18 C 1.52999 * 109.47343 * 59.99887 * 16 14 13 19 19 C 1.50705 * 109.47088 * 179.97438 * 16 14 13 20 20 H 1.07999 * 119.99551 * 359.97438 * 19 16 14 21 21 C 1.37878 * 120.00277 * 179.97438 * 19 16 14 22 22 N 1.31517 * 119.99807 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 120.00253 * 180.02562 * 21 19 16 24 24 H 1.48503 * 109.47077 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47145 * 120.00031 * 23 21 19 26 26 H 1.48501 * 109.46832 * 240.00152 * 23 21 19 27 27 H 1.08995 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46462 * 300.00000 * 1 2 3 29 29 H 1.08997 * 109.46811 * 59.99115 * 1 2 3 30 30 H 1.09001 * 109.46505 * 59.99982 * 3 2 1 31 31 H 1.09000 * 109.46834 * 300.00441 * 3 2 1 32 32 H 1.08993 * 109.47112 * 60.00044 * 4 3 2 33 33 H 1.09003 * 109.46767 * 300.00131 * 4 3 2 34 34 H 1.08993 * 109.47398 * 60.00091 * 5 4 3 35 35 H 1.09000 * 109.47053 * 299.99762 * 5 4 3 36 36 H 1.09000 * 109.47470 * 299.99864 * 6 5 4 37 37 H 1.09007 * 109.46714 * 60.00187 * 6 5 4 38 38 H 1.09001 * 109.47111 * 295.12466 * 7 6 5 39 39 H 1.08997 * 109.46509 * 55.12375 * 7 6 5 40 40 H 1.08994 * 109.47509 * 89.99216 * 10 9 8 41 41 H 1.09000 * 109.47000 * 209.99668 * 10 9 8 42 42 H 1.09000 * 109.46904 * 329.99127 * 10 9 8 43 43 H 1.09003 * 109.47195 * 54.82626 * 15 14 13 44 44 H 1.08997 * 109.47453 * 174.83271 * 15 14 13 45 45 H 1.09004 * 109.47000 * 294.83294 * 15 14 13 46 46 H 1.08999 * 109.47315 * 59.99534 * 18 16 14 47 47 H 1.09002 * 109.47552 * 180.02562 * 18 16 14 48 48 H 1.08999 * 109.47004 * 299.99608 * 18 16 14 49 49 H 0.96998 * 120.00228 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1844 -0.0006 5 6 4.1579 2.5821 0.0000 6 6 5.6832 2.4612 0.0000 7 6 6.3056 3.8589 0.0000 8 7 7.7614 3.7452 0.1174 9 6 8.6574 3.5353 -0.8940 10 6 8.3317 3.3743 -2.3566 11 7 9.8448 3.4998 -0.3588 12 7 9.7606 3.6711 0.9122 13 6 8.5051 3.8318 1.2582 14 7 8.0249 4.0463 2.5403 15 6 7.5162 2.7995 3.1274 16 6 9.0570 4.6479 3.3952 17 1 9.9169 3.9805 3.4512 18 6 9.4910 5.9903 2.8030 19 6 8.4992 4.8664 4.7781 20 1 7.4799 4.5866 4.9995 21 6 9.2902 5.4234 5.7605 22 7 10.5317 5.7636 5.4909 23 14 8.5991 5.6935 7.4747 24 1 7.1891 5.2294 7.5188 25 1 9.4040 4.9269 8.4594 26 1 8.6544 7.1394 7.8085 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 1.6888 1.8462 0.8900 31 1 1.6888 1.8463 -0.8900 32 1 3.8568 0.6437 -0.8908 33 1 3.8575 0.6433 0.8891 34 1 3.8367 3.1225 0.8904 35 1 3.8360 3.1236 -0.8895 36 1 6.0048 1.9199 0.8897 37 1 6.0047 1.9206 -0.8903 38 1 6.0548 4.3683 -0.9304 39 1 5.9166 4.4298 0.8431 40 1 8.3422 4.3507 -2.8408 41 1 9.0741 2.7282 -2.8251 42 1 7.3431 2.9273 -2.4616 43 1 8.2936 2.0364 3.0896 44 1 7.2306 2.9762 4.1644 45 1 6.6469 2.4608 2.5638 46 1 8.6311 6.6577 2.7470 47 1 10.2571 6.4365 3.4370 48 1 9.8943 5.8327 1.8027 49 1 11.0881 6.1557 6.1819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001697963923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:32 Heat of formation + Delta-G solvation = 10.063330 kcal Electronic energy + Delta-G solvation = -26493.852608 eV Core-core repulsion = 22877.839290 eV Total energy + Delta-G solvation = -3616.013318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.211 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.89946 -38.99373 -38.83966 -37.45639 -35.14324 -34.86947 -32.64303 -31.44365 -31.16102 -28.79451 -27.85958 -27.17497 -26.26329 -25.97706 -23.69352 -23.33993 -22.04569 -21.46805 -21.06425 -18.52448 -17.79683 -17.44031 -17.26787 -17.21010 -16.91893 -16.39380 -16.20049 -15.93908 -15.55848 -15.30924 -14.79932 -14.48326 -14.26268 -14.20109 -13.88047 -13.58351 -13.51676 -13.22657 -13.07382 -13.02720 -12.78484 -12.70740 -12.59313 -12.48218 -12.26823 -12.21805 -12.13526 -12.04914 -12.01227 -11.82674 -11.51886 -11.35470 -11.06364 -10.92444 -10.59010 -10.58766 -10.21846 -9.19157 -8.13435 -6.28747 0.87218 1.39014 1.44978 1.46647 1.58334 1.91952 2.41712 2.82213 3.04027 3.18521 3.56998 3.67993 3.85073 3.97939 4.04013 4.12594 4.17042 4.35187 4.40369 4.45312 4.48409 4.53363 4.54812 4.58540 4.65032 4.73319 4.74990 4.77775 4.80377 4.85791 4.89044 4.91889 4.95207 4.99074 5.02670 5.10508 5.16816 5.21360 5.36192 5.41531 5.43317 5.60050 5.65555 5.93555 6.03596 6.16082 6.26961 6.62775 6.82101 7.40238 7.88679 8.94032 Molecular weight = 310.21amu Principal moments of inertia in cm(-1) A = 0.010896 B = 0.003557 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.196737 B = 7869.063955 C =10096.379674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.057 3.943 4 C -0.115 4.115 5 C -0.102 4.102 6 C -0.126 4.126 7 C 0.104 3.896 8 N -0.471 5.471 9 C 0.174 3.826 10 C -0.056 4.056 11 N -0.343 5.343 12 N -0.371 5.371 13 C 0.362 3.638 14 N -0.458 5.458 15 C 0.044 3.956 16 C 0.240 3.760 17 H -0.025 1.025 18 C -0.114 4.114 19 C -0.525 4.525 20 H 0.076 0.924 21 C 0.011 3.989 22 N -0.921 5.921 23 Si 0.971 3.029 24 H -0.257 1.257 25 H -0.283 1.283 26 H -0.281 1.281 27 H 0.092 0.908 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.008 0.992 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.030 0.970 47 H 0.064 0.936 48 H 0.011 0.989 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.201 -7.245 -15.836 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.019 4.019 4 C -0.153 4.153 5 C -0.140 4.140 6 C -0.165 4.165 7 C -0.017 4.017 8 N -0.166 5.166 9 C -0.095 4.095 10 C -0.115 4.115 11 N -0.182 5.182 12 N -0.214 5.214 13 C 0.004 3.996 14 N -0.183 5.183 15 C -0.103 4.103 16 C 0.134 3.866 17 H -0.007 1.007 18 C -0.172 4.172 19 C -0.563 4.563 20 H 0.094 0.906 21 C -0.189 4.189 22 N -0.560 5.560 23 Si 0.796 3.204 24 H -0.181 1.181 25 H -0.209 1.209 26 H -0.207 1.207 27 H 0.111 0.889 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.126 0.874 43 H 0.027 0.973 44 H 0.110 0.890 45 H 0.104 0.896 46 H 0.049 0.951 47 H 0.083 0.917 48 H 0.030 0.970 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.849 -7.124 -15.648 26.260 hybrid contribution -0.408 0.130 1.265 1.336 sum -20.257 -6.995 -14.383 25.810 Atomic orbital electron populations 1.22901 0.79676 1.03628 1.00842 1.87834 1.21377 1.29412 1.95631 1.22656 0.93942 0.84155 1.01120 1.21456 0.93193 0.97788 1.02865 1.21327 0.92129 0.96454 1.04105 1.21935 0.96584 0.94924 1.03031 1.22242 0.73292 0.99966 1.06231 1.46523 1.10013 1.54871 1.05197 1.25751 0.85156 1.03222 0.95359 1.20426 1.04682 1.05110 0.81266 1.73843 1.22069 1.20956 1.01367 1.74627 1.17299 1.22731 1.06717 1.22875 0.86927 1.00549 0.89272 1.59074 1.36970 1.25405 0.96889 1.22423 0.98507 0.87360 1.02055 1.18939 0.86643 0.91008 0.90037 1.00746 1.21568 0.99904 0.98634 0.97121 1.21394 0.99274 1.41737 0.93872 0.90599 1.25832 0.94963 0.94901 1.03163 1.70092 1.08314 1.42747 1.34834 0.85307 0.78914 0.77640 0.78555 1.18091 1.20929 1.20723 0.88923 0.93464 0.92914 0.92875 0.91784 0.91028 0.92527 0.91066 0.88933 0.93061 0.90009 0.85592 0.88732 0.88118 0.88376 0.87447 0.97308 0.88964 0.89573 0.95094 0.91731 0.97024 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.42 10.70 -148.98 -1.59 -9.02 16 3 C 0.06 0.76 5.94 71.98 0.43 1.19 16 4 C -0.12 -1.55 5.58 30.59 0.17 -1.38 16 5 C -0.10 -1.14 5.21 30.59 0.16 -0.98 16 6 C -0.13 -2.01 5.53 30.60 0.17 -1.84 16 7 C 0.10 2.07 5.85 86.38 0.51 2.58 16 8 N -0.47 -14.85 2.81 -514.85 -1.45 -16.30 16 9 C 0.17 5.42 8.07 137.64 1.11 6.53 16 10 C -0.06 -0.93 10.20 71.24 0.73 -0.20 16 11 N -0.34 -14.67 12.18 -49.53 -0.60 -15.27 16 12 N -0.37 -18.32 10.28 -58.01 -0.60 -18.92 16 13 C 0.36 15.54 5.91 260.11 1.54 17.07 16 14 N -0.46 -20.48 4.62 -711.01 -3.28 -23.76 16 15 C 0.04 1.68 9.36 127.69 1.19 2.88 16 16 C 0.24 13.02 1.74 44.17 0.08 13.09 16 17 H -0.03 -1.60 7.89 -2.39 -0.02 -1.62 16 18 C -0.11 -6.26 8.81 71.98 0.63 -5.63 16 19 C -0.52 -28.63 7.81 25.60 0.20 -28.43 16 20 H 0.08 3.90 6.45 -2.91 -0.02 3.89 16 21 C 0.01 0.59 5.30 84.65 0.45 1.04 16 22 N -0.92 -54.77 11.32 21.45 0.24 -54.53 16 23 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 1.08 6.16 -2.39 -0.01 1.06 16 37 H 0.08 1.12 7.75 -2.38 -0.02 1.10 16 38 H 0.13 1.60 8.07 -2.39 -0.02 1.58 16 39 H 0.09 2.13 8.09 -2.39 -0.02 2.11 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.11 1.05 7.58 -2.39 -0.02 1.03 16 43 H 0.01 0.34 8.11 -2.39 -0.02 0.32 16 44 H 0.09 3.64 5.96 -2.39 -0.01 3.63 16 45 H 0.09 2.63 6.15 -2.39 -0.01 2.61 16 46 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.06 3.85 6.07 -2.39 -0.01 3.84 16 48 H 0.01 0.60 6.40 -2.39 -0.02 0.59 16 49 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -78.06 389.78 4.27 -73.80 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.91 Total: 11.44 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 8.61 Total: 7.46 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -5.68 Total: -128.78 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -1.59 Total: -9.02 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -78.06 4.27 -73.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001697963923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.858 kcal (2) G-P(sol) polarization free energy of solvation -78.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds